Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 ELP4-222ENST00000640231 2062 ntTSL 5 BASIC12.35□□□□□ -0.436e-6■■■■■ 122.4
SF3B1O75533 TPCN1-223ENST00000552985 762 ntTSL 312.25□□□□□ -0.456e-6■■■■■ 122.4
SF3B1O75533 DDR1-223ENST00000324771 4148 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.496e-6■■■■■ 122.4
SF3B1O75533 METTL2B-201ENST00000262432 2182 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.496e-6■■■■■ 122.4
SF3B1O75533 DDR1-232ENST00000418800 3588 ntAPPRIS P3 TSL 2 BASIC11.94□□□□□ -0.56e-6■■■■■ 122.4
SF3B1O75533 VGLL4-201ENST00000273038 3725 ntTSL 1 (best) BASIC11.81□□□□□ -0.525e-6■■■■■ 122.4
SF3B1O75533 DDR1-227ENST00000376570 3820 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.546e-6■■■■■ 122.4
SF3B1O75533 AC019080.1-203ENST00000430416 889 ntTSL 1 (best)11.64□□□□□ -0.556e-6■■■■■ 122.4
SF3B1O75533 NFE2L2-211ENST00000464747 2749 ntTSL 2 BASIC11.51□□□□□ -0.576e-6■■■■■ 122.4
SF3B1O75533 YIPF3-215ENST00000511831 566 ntTSL 411.46□□□□□ -0.574e-6■■■■■ 122.4
SF3B1O75533 NUP85-211ENST00000579324 2010 ntTSL 2 BASIC11.3□□□□□ -0.66e-6■■■■■ 122.4
SF3B1O75533 DSE-203ENST00000430252 1130 ntTSL 211.3□□□□□ -0.66e-6■■■■■ 122.4
SF3B1O75533 PSMB2-203ENST00000630477 1127 ntTSL 1 (best)11.25□□□□□ -0.616e-6■■■■■ 122.4
SF3B1O75533 DDR1-239ENST00000452441 3857 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.626e-6■■■■■ 122.4
SF3B1O75533 SCFD2-202ENST00000401642 3176 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.626e-6■■■■■ 122.4
SF3B1O75533 MAST2-203ENST00000372009 4047 ntTSL 5 BASIC11.12□□□□□ -0.636e-6■■■■■ 122.4
SF3B1O75533 METTL2B-206ENST00000482555 1590 ntTSL 1 (best)11.09□□□□□ -0.636e-6■■■■■ 122.4
SF3B1O75533 DDR1-240ENST00000454612 3942 ntAPPRIS P3 TSL 5 BASIC11.06□□□□□ -0.646e-6■■■■■ 122.4
SF3B1O75533 CLPB-210ENST00000539148 564 ntTSL 510.99□□□□□ -0.656e-6■■■■■ 122.4
SF3B1O75533 METTL2B-204ENST00000480046 5743 ntTSL 2 BASIC10.71□□□□□ -0.696e-6■■■■■ 122.4
SF3B1O75533 NUP85-210ENST00000579298 1890 ntTSL 5 BASIC10.61□□□□□ -0.716e-6■■■■■ 122.4
SF3B1O75533 TPCN1-221ENST00000552642 526 ntTSL 410.35□□□□□ -0.756e-6■■■■■ 122.4
SF3B1O75533 VGLL4-213ENST00000445411 726 ntTSL 510.34□□□□□ -0.755e-6■■■■■ 122.4
SF3B1O75533 NUP85-212ENST00000579557 817 ntTSL 510.26□□□□□ -0.776e-6■■■■■ 122.4
SF3B1O75533 LINC01006-203ENST00000425712 661 ntTSL 2 BASIC10.15□□□□□ -0.786e-6■■■■■ 122.4
SF3B1O75533 NUP85-216ENST00000581104 2233 ntTSL 210.14□□□□□ -0.796e-6■■■■■ 122.4
SF3B1O75533 CLPB-214ENST00000544683 624 ntTSL 510.02□□□□□ -0.816e-6■■■■■ 122.4
SF3B1O75533 EZH1-217ENST00000590078 2392 ntTSL 2 BASIC9.96□□□□□ -0.826e-6■■■■■ 122.4
SF3B1O75533 EZH1-205ENST00000585893 2394 ntTSL 2 BASIC9.96□□□□□ -0.826e-6■■■■■ 122.4
SF3B1O75533 EZH1-215ENST00000588897 2283 ntTSL 29.85□□□□□ -0.836e-6■■■■■ 122.4
SF3B1O75533 ELP4-226ENST00000640790 1249 ntTSL 59.82□□□□□ -0.846e-6■■■■■ 122.4
SF3B1O75533 TPCN1-209ENST00000547275 564 ntTSL 49.82□□□□□ -0.846e-6■■■■■ 122.4
SF3B1O75533 EHBP1-211ENST00000449820 539 ntTSL 59.73□□□□□ -0.856e-6■■■■■ 122.4
SF3B1O75533 NUP85-208ENST00000578830 922 ntTSL 59.71□□□□□ -0.866e-6■■■■■ 122.4
SF3B1O75533 ELP4-229ENST00000640961 8164 ntAPPRIS P2 TSL 1 (best) BASIC8.65□□□□□ -1.026e-6■■■■■ 122.4
SF3B1O75533 EZH1-206ENST00000585912 2295 ntTSL 1 (best)8.59□□□□□ -1.046e-6■■■■■ 122.4
SF3B1O75533 METTL2B-207ENST00000497665 977 ntTSL 58.44□□□□□ -1.066e-6■■■■■ 122.4
SF3B1O75533 EZH1-208ENST00000586103 2752 ntTSL 58.36□□□□□ -1.076e-6■■■■■ 122.4
SF3B1O75533 LRP6-206ENST00000543091 4774 ntTSL 1 (best) BASIC8.27□□□□□ -1.096e-6■■■■■ 122.4
SF3B1O75533 DIP2B-201ENST00000301180 8593 ntAPPRIS P1 TSL 5 BASIC7.96□□□□□ -1.136e-6■■■■■ 122.4
SF3B1O75533 AL590542.1-201ENST00000449314 1596 ntTSL 1 (best) BASIC7.67□□□□□ -1.186e-6■■■■■ 122.4
SF3B1O75533 EZH1-222ENST00000592743 2501 ntAPPRIS P1 TSL 2 BASIC7.36□□□□□ -1.236e-6■■■■■ 122.4
SF3B1O75533 AC019080.1-202ENST00000456746 5147 ntTSL 27.17□□□□□ -1.266e-6■■■■■ 122.4
SF3B1O75533 PSMB2-202ENST00000621781 4217 ntTSL 1 (best) BASIC7.14□□□□□ -1.276e-6■■■■■ 122.4
SF3B1O75533 AC019080.1-201ENST00000397057 5202 ntTSL 1 (best) BASIC6.8□□□□□ -1.326e-6■■■■■ 122.4
SF3B1O75533 RABGAP1L-218ENST00000489615 6821 ntTSL 1 (best) BASIC6.78□□□□□ -1.321e-6■■■■■ 122.4
SF3B1O75533 WDR35-201ENST00000281405 6918 ntAPPRIS P3 TSL 1 (best) BASIC6.71□□□□□ -1.346e-6■■■■■ 122.4
SF3B1O75533 SEH1L-207ENST00000590032 764 ntTSL 26.3□□□□□ -1.46e-6■■■■■ 122.4
SF3B1O75533 FBXO25-204ENST00000382824 10386 ntAPPRIS P4 TSL 1 (best) BASIC6.21□□□□□ -1.416e-6■■■■■ 122.4
SF3B1O75533 RABGAP1L-212ENST00000469553 2103 ntTSL 1 (best)6.01□□□□□ -1.451e-6■■■■■ 122.4
SF3B1O75533 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.516e-6■■■■■ 122.4
SF3B1O75533 LRP6-203ENST00000538239 7812 ntTSL 1 (best)5.54□□□□□ -1.526e-6■■■■■ 122.4
SF3B1O75533 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC5.12□□□□□ -1.596e-6■■■■■ 122.4
SF3B1O75533 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.616e-6■■■■■ 122.4
SF3B1O75533 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC5.02□□□□□ -1.611e-6■■■■■ 122.4
SF3B1O75533 U2SURP-205ENST00000467348 1267 ntTSL 54.74□□□□□ -1.656e-6■■■■■ 122.4
SF3B1O75533 WDR35-203ENST00000414212 3483 ntTSL 54.67□□□□□ -1.666e-6■■■■■ 122.4
SF3B1O75533 AC087633.2-207ENST00000616940 698 ntTSL 54.55□□□□□ -1.686e-6■■■■■ 122.4
SF3B1O75533 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC4.38□□□□□ -1.711e-6■■■■■ 122.4
SF3B1O75533 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC4.35□□□□□ -1.716e-6■■■■■ 122.4
SF3B1O75533 RABGAP1L-220ENST00000529145 722 ntTSL 43.92□□□□□ -1.781e-6■■■■■ 122.4
SF3B1O75533 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC3.34□□□□□ -1.881e-6■■■■■ 122.4
SF3B1O75533 NFE2L2-213ENST00000586532 942 ntTSL 53.33□□□□□ -1.886e-6■■■■■ 122.4
SF3B1O75533 ELP4-213ENST00000638828 4647 ntTSL 23.14□□□□□ -1.916e-6■■■■■ 122.4
SF3B1O75533 PARPBP-208ENST00000535811 1465 ntTSL 22.79□□□□□ -1.966e-6■■■■■ 122.4
SF3B1O75533 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC2.73□□□□□ -1.976e-6■■■■■ 122.4
SF3B1O75533 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC2.38□□□□□ -2.036e-6■■■■■ 122.4
SF3B1O75533 PARPBP-207ENST00000457614 2319 ntTSL 1 (best)1.59□□□□□ -2.156e-6■■■■■ 122.4
SF3B1O75533 PARPBP-206ENST00000417507 2212 ntTSL 1 (best)1.53□□□□□ -2.166e-6■■■■■ 122.4
SF3B1O75533 PARPBP-205ENST00000412715 2133 ntTSL 1 (best)1.3□□□□□ -2.26e-6■■■■■ 122.4
SF3B1O75533 PRPF19-205ENST00000540473 169 ntTSL 57.26□□□□□ -1.251e-6■■■■■ 122.4
SF3B1O75533 HGS-215ENST00000576393 922 ntTSL 222.93■■□□□ 1.262e-6■■■■■ 122.4
SF3B1O75533 HGS-217ENST00000577012 716 ntTSL 522.43■■□□□ 1.182e-6■■■■■ 122.4
SF3B1O75533 HGS-205ENST00000571518 644 ntTSL 222.37■■□□□ 1.172e-6■■■■■ 122.4
SF3B1O75533 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.725e-7■■■■■ 122.3
SF3B1O75533 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC20.63■□□□□ 0.895e-7■■■■■ 122.3
SF3B1O75533 NAPA-202ENST00000593761 891 ntTSL 518.5■□□□□ 0.555e-7■■■■■ 122.3
SF3B1O75533 NAPA-205ENST00000594001 1417 ntTSL 218.46■□□□□ 0.555e-7■■■■■ 122.3
SF3B1O75533 NAPA-219ENST00000601208 989 ntTSL 516.48■□□□□ 0.235e-7■■■■■ 122.3
SF3B1O75533 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC15.79■□□□□ 0.123e-6■■■■■ 122.3
SF3B1O75533 B3GNTL1-201ENST00000320865 1383 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.073e-6■■■■■ 122.3
SF3B1O75533 B3GNTL1-202ENST00000570947 390 ntTSL 312.21□□□□□ -0.453e-6■■■■■ 122.3
SF3B1O75533 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.054e-7■■■■■ 122.3
SF3B1O75533 SEC16A-207ENST00000453963 4834 ntAPPRIS ALT2 TSL 1 (best)12.12□□□□□ -0.474e-7■■■■■ 122.3
SF3B1O75533 SEC16A-206ENST00000431893 6465 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.564e-7■■■■■ 122.3
SF3B1O75533 SEC16A-205ENST00000371706 8093 ntAPPRIS ALT2 TSL 5 BASIC11.14□□□□□ -0.634e-7■■■■■ 122.3
SF3B1O75533 SEC16A-203ENST00000313050 8806 ntAPPRIS P3 TSL 2 BASIC11.08□□□□□ -0.644e-7■■■■■ 122.3
SF3B1O75533 PTPRVP-205ENST00000641549 5067 ntBASIC13.78□□□□□ -0.23e-7■■■■■ 122.3
SF3B1O75533 PTPRVP-201ENST00000482597 3999 ntTSL 1 (best) BASIC9.91□□□□□ -0.823e-7■■■■■ 122.3
SF3B1O75533 CDKAL1-202ENST00000378610 3115 ntAPPRIS P1 TSL 2 BASIC6.92□□□□□ -1.32e-6■■■■■ 122.2
SF3B1O75533 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.412e-6■■■■■ 122.2
SF3B1O75533 MGAT5-202ENST00000409645 8252 ntAPPRIS P1 TSL 5 BASIC8.56□□□□□ -1.042e-6■■■■■ 122.2
SF3B1O75533 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC27■■□□□ 1.911e-7■■■■■ 122.1
SF3B1O75533 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC25.98■■□□□ 1.751e-7■■■■■ 122.1
SF3B1O75533 TPI1-202ENST00000396705 1231 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.331e-7■■■■■ 122.1
SF3B1O75533 FAM102A-206ENST00000493175 423 ntTSL 314.14□□□□□ -0.159e-7■■■■■ 122.1
SF3B1O75533 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC24.28■■□□□ 1.481e-7■■■■■ 122.1
SF3B1O75533 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.421e-7■■■■■ 122.1
SF3B1O75533 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.971e-7■■■■■ 122.1
SF3B1O75533 SLC12A6-219ENST00000561080 5407 ntTSL 1 (best)18.52■□□□□ 0.564e-7■■■■■ 122.1
Retrieved 100 of 46,956 protein–RNA pairs in 1218 ms