RNA–Protein interactions for RNA: ENST00000324771.12

DDR1-223, Transcript of discoidin domain receptor tyrosine kinase 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene DDR1, Length 4,148 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDR1-223ENST00000324771 NISCHQ9Y2I1 1504 aa22.04■■□□□ 1.12
DDR1-223ENST00000324771 DCAF8L2P0C7V8 631 aa21.53■■□□□ 1.04
DDR1-223ENST00000324771 SHROOM4Q9ULL8 1493 aa20.72■□□□□ 0.91
DDR1-223ENST00000324771 SUPT5HO00267 1087 aaKnown RBP20.66■□□□□ 0.9
DDR1-223ENST00000324771 EHMT2Q96KQ7 1210 aa19.84■□□□□ 0.77
DDR1-223ENST00000324771 FAM9AQ8IZU1 332 aaPredicted RBP19.42■□□□□ 0.7
DDR1-223ENST00000324771 TTBK1Q5TCY1 1321 aaPredicted RBP19.05■□□□□ 0.64
DDR1-223ENST00000324771 PCGF6Q9BYE7 350 aa19.05■□□□□ 0.64
DDR1-223ENST00000324771 TRIM41Q8WV44 630 aa18.96■□□□□ 0.63
DDR1-223ENST00000324771 RANGAP1P46060 587 aaPredicted RBP18.87■□□□□ 0.61
DDR1-223ENST00000324771 LOC105371045A0A1W2PR82 267 aa18.82■□□□□ 0.6
DDR1-223ENST00000324771 CHIC1Q5VXU3 224 aa18.82■□□□□ 0.6
DDR1-223ENST00000324771 ABCC9O60706 1549 aa18.79■□□□□ 0.6
DDR1-223ENST00000324771 PPARGC1BQ86YN6 1023 aaKnown RBP18.76■□□□□ 0.59
DDR1-223ENST00000324771 PABPN1Q86U42 306 aaKnown RBP eCLIP18.6■□□□□ 0.57
DDR1-223ENST00000324771 UBTFP17480 764 aaKnown RBP18.53■□□□□ 0.56
DDR1-223ENST00000324771 APLP2Q06481 763 aa18.49■□□□□ 0.55
DDR1-223ENST00000324771 ZCCHC6Q5VYS8 1495 aaKnown RBP18.32■□□□□ 0.52
DDR1-223ENST00000324771 ATP1B4Q9UN42 357 aaPredicted RBP18.31■□□□□ 0.52
DDR1-223ENST00000324771 CCER1Q8TC90 406 aaPredicted RBP18.26■□□□□ 0.51
DDR1-223ENST00000324771 TRIM26Q12899 539 aaPredicted RBP18.15■□□□□ 0.5
DDR1-223ENST00000324771 SCRIBQ14160 1630 aa18.1■□□□□ 0.49
DDR1-223ENST00000324771 HRCP23327 699 aa18.08■□□□□ 0.48
DDR1-223ENST00000324771 ITGAEP38570 1179 aa17.98■□□□□ 0.47
DDR1-223ENST00000324771 CCDC180Q9P1Z9 1646 aa17.97■□□□□ 0.47
DDR1-223ENST00000324771 HNRNPUL2Q1KMD3 747 aaKnown RBP17.97■□□□□ 0.47
DDR1-223ENST00000324771 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.93■□□□□ 0.46
DDR1-223ENST00000324771 ZEB1P37275 1124 aaPredicted RBP17.9■□□□□ 0.46
DDR1-223ENST00000324771 PELP1Q8IZL8 1130 aaKnown RBP17.83■□□□□ 0.44
DDR1-223ENST00000324771 MYO15BQ96JP2 1530 aa17.8■□□□□ 0.44
DDR1-223ENST00000324771 YTHDC1Q96MU7 727 aaKnown RBP17.78■□□□□ 0.44
DDR1-223ENST00000324771 RSF1Q96T23 1441 aaPredicted RBP17.7■□□□□ 0.42
DDR1-223ENST00000324771 CSRNP3Q8WYN3 585 aa17.66■□□□□ 0.42
DDR1-223ENST00000324771 CECR2Q9BXF3 1484 aa17.59■□□□□ 0.41
DDR1-223ENST00000324771 P3H3Q8IVL6 736 aa17.58■□□□□ 0.41
DDR1-223ENST00000324771 CENPBP07199 599 aaPredicted RBP17.49■□□□□ 0.39
DDR1-223ENST00000324771 ARID3CA6NKF2 412 aa17.47■□□□□ 0.39
DDR1-223ENST00000324771 FAM50AQ14320 339 aaKnown RBP17.47■□□□□ 0.39
DDR1-223ENST00000324771 CNGB1Q14028 1251 aaPredicted RBP17.41■□□□□ 0.38
DDR1-223ENST00000324771 MYT1Q01538 1121 aa17.39■□□□□ 0.37
DDR1-223ENST00000324771 RB1CC1Q8TDY2 1594 aa17.38■□□□□ 0.37
DDR1-223ENST00000324771 FBLN2P98095 1184 aa17.38■□□□□ 0.37
DDR1-223ENST00000324771 NACADO15069 1562 aa17.34■□□□□ 0.37
DDR1-223ENST00000324771 DIEXFQ68CQ4 756 aaKnown RBP17.34■□□□□ 0.37
DDR1-223ENST00000324771 DCAF1Q9Y4B6 1507 aa17.33■□□□□ 0.36
DDR1-223ENST00000324771 NEUROD1Q13562 356 aa17.32■□□□□ 0.36
DDR1-223ENST00000324771 POLR3GLQ9BT43 218 aa17.3■□□□□ 0.36
DDR1-223ENST00000324771 MROH2BQ7Z745 1585 aa17.28■□□□□ 0.36
DDR1-223ENST00000324771 MYT1LQ9UL68 1186 aa17.22■□□□□ 0.35
DDR1-223ENST00000324771 TRIM52Q96A61 297 aa17.17■□□□□ 0.34
DDR1-223ENST00000324771 SOGA1O94964 1423 aa17.11■□□□□ 0.33
DDR1-223ENST00000324771 WRNQ14191 1432 aaPredicted RBP eCLIP17.1■□□□□ 0.33
DDR1-223ENST00000324771 BAZ1AQ9NRL2 1556 aaPredicted RBP17.08■□□□□ 0.33
DDR1-223ENST00000324771 BAZ1BQ9UIG0 1483 aaKnown RBP17.08■□□□□ 0.32
DDR1-223ENST00000324771 CEP162Q5TB80 1403 aa17.05■□□□□ 0.32
DDR1-223ENST00000324771 ABCC8Q09428 1581 aa17.05■□□□□ 0.32
DDR1-223ENST00000324771 CLIP1P30622 1438 aa17.03■□□□□ 0.32
DDR1-223ENST00000324771 WIZO95785 1651 aa17.03■□□□□ 0.32
DDR1-223ENST00000324771 CCDC88BA6NC98 1476 aa17.02■□□□□ 0.32
DDR1-223ENST00000324771 ZNF316A6NFI3 1004 aaPredicted RBP17.02■□□□□ 0.32
DDR1-223ENST00000324771 ZNF326Q5BKZ1 582 aaKnown RBP17.02■□□□□ 0.31
DDR1-223ENST00000324771 ZNF777Q9ULD5 760 aaPredicted RBP17■□□□□ 0.31
DDR1-223ENST00000324771 CHIC2Q9UKJ5 165 aa16.96■□□□□ 0.31
DDR1-223ENST00000324771 NEFLP07196 543 aa16.95■□□□□ 0.3
DDR1-223ENST00000324771 GTF3C3Q9Y5Q9 886 aa16.92■□□□□ 0.3
DDR1-223ENST00000324771 HIRIP3Q9BW71 556 aaPredicted RBP16.89■□□□□ 0.29
DDR1-223ENST00000324771 GOLGA3Q08378 1498 aa16.88■□□□□ 0.29
DDR1-223ENST00000324771 TNIKQ9UKE5 1360 aa16.86■□□□□ 0.29
DDR1-223ENST00000324771 BCANQ96GW7 911 aa16.83■□□□□ 0.28
DDR1-223ENST00000324771 RUSC2Q8N2Y8 1516 aa16.81■□□□□ 0.28
DDR1-223ENST00000324771 EEA1Q15075 1411 aa16.79■□□□□ 0.28
DDR1-223ENST00000324771 KIF27Q86VH2 1401 aa16.76■□□□□ 0.27
DDR1-223ENST00000324771 DDX10Q13206 875 aaKnown RBP16.76■□□□□ 0.27
DDR1-223ENST00000324771 KANK4Q5T7N3 995 aaPredicted RBP16.75■□□□□ 0.27
DDR1-223ENST00000324771 RRP7BPQ9NSQ0 103 aa16.75■□□□□ 0.27
DDR1-223ENST00000324771 CHMP7Q8WUX9 453 aaPredicted RBP16.74■□□□□ 0.27
DDR1-223ENST00000324771 CEP164Q9UPV0 1460 aa16.74■□□□□ 0.27
DDR1-223ENST00000324771 SLC4A1APQ9BWU0 796 aaKnown RBP16.73■□□□□ 0.27
DDR1-223ENST00000324771 MTUS2Q5JR59 1369 aa16.73■□□□□ 0.27
DDR1-223ENST00000324771 MIER1Q8N108 512 aa16.72■□□□□ 0.27
DDR1-223ENST00000324771 ACIN1Q9UKV3 1341 aaKnown RBP16.72■□□□□ 0.27
DDR1-223ENST00000324771 CUX2O14529 1486 aa16.7■□□□□ 0.26
DDR1-223ENST00000324771 ANP32CO43423 234 aa16.68■□□□□ 0.26
DDR1-223ENST00000324771 ATAD2BQ9ULI0 1458 aa16.68■□□□□ 0.26
DDR1-223ENST00000324771 TOP2AP11388 1531 aaKnown RBP16.68■□□□□ 0.26
DDR1-223ENST00000324771 CDK11AQ9UQ88 783 aaPredicted RBP16.68■□□□□ 0.26
DDR1-223ENST00000324771 SIN3AQ96ST3 1273 aa16.65■□□□□ 0.26
DDR1-223ENST00000324771 SMARCA4P51532 1647 aa16.65■□□□□ 0.26
DDR1-223ENST00000324771 CARMIL1Q5VZK9 1371 aa16.64■□□□□ 0.25
DDR1-223ENST00000324771 TDRD9Q8NDG6 1382 aaKnown RBP16.63■□□□□ 0.25
DDR1-223ENST00000324771 ERICH6Q7L0X2 663 aa16.63■□□□□ 0.25
DDR1-223ENST00000324771 TONSLQ96HA7 1378 aa16.62■□□□□ 0.25
DDR1-223ENST00000324771 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.61■□□□□ 0.25
DDR1-223ENST00000324771 SCAF1Q9H7N4 1312 aaKnown RBP16.6■□□□□ 0.25
DDR1-223ENST00000324771 KCNH8Q96L42 1107 aa16.58■□□□□ 0.24
DDR1-223ENST00000324771 RAPGEF2Q9Y4G8 1499 aa16.57■□□□□ 0.24
DDR1-223ENST00000324771 SMARCA2P51531 1590 aa16.56■□□□□ 0.24
DDR1-223ENST00000324771 KDM2AQ9Y2K7 1162 aa16.55■□□□□ 0.24
DDR1-223ENST00000324771 SENP3-EIF4A1A0A087X0R7 540 aa16.55■□□□□ 0.24
DDR1-223ENST00000324771 SENP3Q9H4L4 574 aaPredicted RBP16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms