RNA–Protein interactions for RNA: ENST00000418800.6

DDR1-232, Transcript of discoidin domain receptor tyrosine kinase 1, humanhuman

APPRIS P3 TSL 2 BASIC

Gene DDR1, Length 3,588 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDR1-232ENST00000418800 NISCHQ9Y2I1 1504 aa21.61■■□□□ 1.05
DDR1-232ENST00000418800 SUPT5HO00267 1087 aaKnown RBP19.93■□□□□ 0.78
DDR1-232ENST00000418800 SHROOM4Q9ULL8 1493 aa19.89■□□□□ 0.77
DDR1-232ENST00000418800 DCAF8L2P0C7V8 631 aa19.73■□□□□ 0.75
DDR1-232ENST00000418800 PCGF6Q9BYE7 350 aa19.49■□□□□ 0.71
DDR1-232ENST00000418800 PPARGC1BQ86YN6 1023 aaKnown RBP19.44■□□□□ 0.7
DDR1-232ENST00000418800 HRCP23327 699 aa19.4■□□□□ 0.7
DDR1-232ENST00000418800 EHMT2Q96KQ7 1210 aa18.99■□□□□ 0.63
DDR1-232ENST00000418800 PELP1Q8IZL8 1130 aaKnown RBP18.93■□□□□ 0.62
DDR1-232ENST00000418800 CCDC180Q9P1Z9 1646 aa18.87■□□□□ 0.61
DDR1-232ENST00000418800 CHIC1Q5VXU3 224 aa18.86■□□□□ 0.61
DDR1-232ENST00000418800 LOC105371045A0A1W2PR82 267 aa18.85■□□□□ 0.61
DDR1-232ENST00000418800 FAM9AQ8IZU1 332 aaPredicted RBP18.65■□□□□ 0.58
DDR1-232ENST00000418800 MYO15BQ96JP2 1530 aa18.57■□□□□ 0.56
DDR1-232ENST00000418800 SCAF1Q9H7N4 1312 aaKnown RBP18.54■□□□□ 0.56
DDR1-232ENST00000418800 TRIM26Q12899 539 aaPredicted RBP18.43■□□□□ 0.54
DDR1-232ENST00000418800 TTBK1Q5TCY1 1321 aaPredicted RBP18.41■□□□□ 0.54
DDR1-232ENST00000418800 ZEB1P37275 1124 aaPredicted RBP18.22■□□□□ 0.51
DDR1-232ENST00000418800 GTF3C3Q9Y5Q9 886 aa18.19■□□□□ 0.5
DDR1-232ENST00000418800 MYT1Q01538 1121 aa18.18■□□□□ 0.5
DDR1-232ENST00000418800 TRIM41Q8WV44 630 aa18.17■□□□□ 0.5
DDR1-232ENST00000418800 YTHDC1Q96MU7 727 aaKnown RBP18.16■□□□□ 0.5
DDR1-232ENST00000418800 ZCCHC6Q5VYS8 1495 aaKnown RBP18.15■□□□□ 0.5
DDR1-232ENST00000418800 CCER1Q8TC90 406 aaPredicted RBP18.13■□□□□ 0.49
DDR1-232ENST00000418800 CENPBP07199 599 aaPredicted RBP18.1■□□□□ 0.49
DDR1-232ENST00000418800 NEUROD1Q13562 356 aa18.1■□□□□ 0.49
DDR1-232ENST00000418800 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.09■□□□□ 0.49
DDR1-232ENST00000418800 ABCC9O60706 1549 aa18.07■□□□□ 0.48
DDR1-232ENST00000418800 ACIN1Q9UKV3 1341 aaKnown RBP18.06■□□□□ 0.48
DDR1-232ENST00000418800 DCAF1Q9Y4B6 1507 aa17.89■□□□□ 0.46
DDR1-232ENST00000418800 DIEXFQ68CQ4 756 aaKnown RBP17.88■□□□□ 0.45
DDR1-232ENST00000418800 PABPN1Q86U42 306 aaKnown RBP eCLIP17.69■□□□□ 0.42
DDR1-232ENST00000418800 RANGAP1P46060 587 aaPredicted RBP17.65■□□□□ 0.42
DDR1-232ENST00000418800 NACADO15069 1562 aa17.57■□□□□ 0.4
DDR1-232ENST00000418800 SCRIBQ14160 1630 aa17.55■□□□□ 0.4
DDR1-232ENST00000418800 HNRNPUL2Q1KMD3 747 aaKnown RBP17.53■□□□□ 0.4
DDR1-232ENST00000418800 UBTFP17480 764 aaKnown RBP17.51■□□□□ 0.39
DDR1-232ENST00000418800 RB1CC1Q8TDY2 1594 aa17.46■□□□□ 0.39
DDR1-232ENST00000418800 ZNF316A6NFI3 1004 aaPredicted RBP17.36■□□□□ 0.37
DDR1-232ENST00000418800 MIER1Q8N108 512 aa17.35■□□□□ 0.37
DDR1-232ENST00000418800 BCANQ96GW7 911 aa17.33■□□□□ 0.36
DDR1-232ENST00000418800 APLP2Q06481 763 aa17.29■□□□□ 0.36
DDR1-232ENST00000418800 BCL11AQ9H165 835 aa17.28■□□□□ 0.36
DDR1-232ENST00000418800 UNC13AQ9UPW8 1703 aa17.21■□□□□ 0.35
DDR1-232ENST00000418800 CECR2Q9BXF3 1484 aa17.16■□□□□ 0.34
DDR1-232ENST00000418800 ITGAEP38570 1179 aa17.13■□□□□ 0.33
DDR1-232ENST00000418800 RSF1Q96T23 1441 aaPredicted RBP17.13■□□□□ 0.33
DDR1-232ENST00000418800 ANP32EQ9BTT0 268 aa17.1■□□□□ 0.33
DDR1-232ENST00000418800 CSRNP3Q8WYN3 585 aa17.06■□□□□ 0.32
DDR1-232ENST00000418800 ERICH6Q7L0X2 663 aa17.04■□□□□ 0.32
DDR1-232ENST00000418800 BICRAQ9NZM4 1560 aa17.02■□□□□ 0.32
DDR1-232ENST00000418800 SUPT16HQ9Y5B9 1047 aaKnown RBP17.02■□□□□ 0.32
DDR1-232ENST00000418800 TSHZ2Q9NRE2 1034 aa16.95■□□□□ 0.3
DDR1-232ENST00000418800 NEFLP07196 543 aa16.92■□□□□ 0.3
DDR1-232ENST00000418800 FKBP8Q14318 412 aa16.89■□□□□ 0.3
DDR1-232ENST00000418800 MROH2BQ7Z745 1585 aa16.84■□□□□ 0.29
DDR1-232ENST00000418800 ATP1B4Q9UN42 357 aaPredicted RBP16.83■□□□□ 0.29
DDR1-232ENST00000418800 CEP162Q5TB80 1403 aa16.83■□□□□ 0.29
DDR1-232ENST00000418800 HIRIP3Q9BW71 556 aaPredicted RBP16.78■□□□□ 0.28
DDR1-232ENST00000418800 KCNH8Q96L42 1107 aa16.75■□□□□ 0.27
DDR1-232ENST00000418800 SOGA1O94964 1423 aa16.73■□□□□ 0.27
DDR1-232ENST00000418800 TRIM52Q96A61 297 aa16.73■□□□□ 0.27
DDR1-232ENST00000418800 DDX10Q13206 875 aaKnown RBP16.72■□□□□ 0.27
DDR1-232ENST00000418800 WIZO95785 1651 aa16.71■□□□□ 0.27
DDR1-232ENST00000418800 CNGB1Q14028 1251 aaPredicted RBP16.7■□□□□ 0.26
DDR1-232ENST00000418800 BAZ1AQ9NRL2 1556 aaPredicted RBP16.67■□□□□ 0.26
DDR1-232ENST00000418800 RBM19Q9Y4C8 960 aaKnown RBP16.66■□□□□ 0.26
DDR1-232ENST00000418800 SMARCA4P51532 1647 aa16.66■□□□□ 0.26
DDR1-232ENST00000418800 CCDC88BA6NC98 1476 aa16.65■□□□□ 0.26
DDR1-232ENST00000418800 IRX6P78412 446 aaPredicted RBP16.64■□□□□ 0.26
DDR1-232ENST00000418800 ABCC8Q09428 1581 aa16.64■□□□□ 0.26
DDR1-232ENST00000418800 CLSPNQ9HAW4 1339 aa16.59■□□□□ 0.25
DDR1-232ENST00000418800 RUSC2Q8N2Y8 1516 aa16.57■□□□□ 0.24
DDR1-232ENST00000418800 TNIKQ9UKE5 1360 aa16.57■□□□□ 0.24
DDR1-232ENST00000418800 NBR1Q14596 966 aa16.57■□□□□ 0.24
DDR1-232ENST00000418800 FAM50AQ14320 339 aaKnown RBP16.55■□□□□ 0.24
DDR1-232ENST00000418800 PRKCSHP14314 528 aaPredicted RBP16.53■□□□□ 0.24
DDR1-232ENST00000418800 CLIP1P30622 1438 aa16.51■□□□□ 0.23
DDR1-232ENST00000418800 CDK11AQ9UQ88 783 aaPredicted RBP16.5■□□□□ 0.23
DDR1-232ENST00000418800 EIF4G1Q04637 1599 aaKnown RBP16.48■□□□□ 0.23
DDR1-232ENST00000418800 ANP32CO43423 234 aa16.46■□□□□ 0.23
DDR1-232ENST00000418800 SIN3AQ96ST3 1273 aa16.46■□□□□ 0.22
DDR1-232ENST00000418800 KANK4Q5T7N3 995 aaPredicted RBP16.44■□□□□ 0.22
DDR1-232ENST00000418800 RTN4Q9NQC3 1192 aaKnown RBP16.43■□□□□ 0.22
DDR1-232ENST00000418800 P3H3Q8IVL6 736 aa16.43■□□□□ 0.22
DDR1-232ENST00000418800 PEG3Q9GZU2 1588 aa16.42■□□□□ 0.22
DDR1-232ENST00000418800 SENP3-EIF4A1A0A087X0R7 540 aa16.41■□□□□ 0.22
DDR1-232ENST00000418800 WRNQ14191 1432 aaPredicted RBP eCLIP16.41■□□□□ 0.22
DDR1-232ENST00000418800 DEKP35659 375 aaKnown RBP16.4■□□□□ 0.22
DDR1-232ENST00000418800 GOLGA3Q08378 1498 aa16.4■□□□□ 0.22
DDR1-232ENST00000418800 HNRNPUQ00839 825 aaKnown RBP eCLIP16.39■□□□□ 0.22
DDR1-232ENST00000418800 ATAD2BQ9ULI0 1458 aa16.39■□□□□ 0.21
DDR1-232ENST00000418800 POLR3GLQ9BT43 218 aa16.38■□□□□ 0.21
DDR1-232ENST00000418800 TOP2AP11388 1531 aaKnown RBP16.38■□□□□ 0.21
DDR1-232ENST00000418800 DNAJC5BQ9UF47 199 aa16.38■□□□□ 0.21
DDR1-232ENST00000418800 CCDC136Q96JN2 1154 aa16.36■□□□□ 0.21
DDR1-232ENST00000418800 MSH5O43196 834 aa16.35■□□□□ 0.21
DDR1-232ENST00000418800 RTL5Q5HYW3 569 aaPredicted RBP16.34■□□□□ 0.21
DDR1-232ENST00000418800 SMARCA2P51531 1590 aa16.34■□□□□ 0.21
DDR1-232ENST00000418800 ANO8Q9HCE9 1232 aaPredicted RBP16.33■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms