RNA–Protein interactions for RNA: ENST00000543091.1

LRP6-206, Transcript of LDL receptor related protein 6, humanhuman

TSL 1 (best) BASIC

Gene LRP6, Length 4,774 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRP6-206ENST00000543091 NISCHQ9Y2I1 1504 aa15.79■□□□□ 0.12
LRP6-206ENST00000543091 DCAF8L2P0C7V8 631 aa14.61□□□□□ -0.07
LRP6-206ENST00000543091 SHROOM4Q9ULL8 1493 aa13.65□□□□□ -0.22
LRP6-206ENST00000543091 ABCC9O60706 1549 aa13.64□□□□□ -0.23
LRP6-206ENST00000543091 CCDC180Q9P1Z9 1646 aa13.55□□□□□ -0.24
LRP6-206ENST00000543091 SUPT5HO00267 1087 aaKnown RBP13.42□□□□□ -0.26
LRP6-206ENST00000543091 ZCCHC6Q5VYS8 1495 aaKnown RBP13.11□□□□□ -0.31
LRP6-206ENST00000543091 PABPN1Q86U42 306 aaKnown RBP eCLIP13.1□□□□□ -0.31
LRP6-206ENST00000543091 RB1CC1Q8TDY2 1594 aa13.04□□□□□ -0.32
LRP6-206ENST00000543091 NACADO15069 1562 aa12.98□□□□□ -0.33
LRP6-206ENST00000543091 SCRIBQ14160 1630 aa12.87□□□□□ -0.35
LRP6-206ENST00000543091 DCAF1Q9Y4B6 1507 aa12.83□□□□□ -0.36
LRP6-206ENST00000543091 MYO15BQ96JP2 1530 aa12.7□□□□□ -0.38
LRP6-206ENST00000543091 TRIM41Q8WV44 630 aa12.62□□□□□ -0.39
LRP6-206ENST00000543091 FAM9AQ8IZU1 332 aaPredicted RBP12.61□□□□□ -0.39
LRP6-206ENST00000543091 EHMT2Q96KQ7 1210 aa12.52□□□□□ -0.41
LRP6-206ENST00000543091 APLP2Q06481 763 aa12.4□□□□□ -0.42
LRP6-206ENST00000543091 BAZ1AQ9NRL2 1556 aaPredicted RBP12.38□□□□□ -0.43
LRP6-206ENST00000543091 BAZ1BQ9UIG0 1483 aaKnown RBP12.34□□□□□ -0.43
LRP6-206ENST00000543091 UBTFP17480 764 aaKnown RBP12.33□□□□□ -0.44
LRP6-206ENST00000543091 RSF1Q96T23 1441 aaPredicted RBP12.31□□□□□ -0.44
LRP6-206ENST00000543091 RANGAP1P46060 587 aaPredicted RBP12.27□□□□□ -0.44
LRP6-206ENST00000543091 CECR2Q9BXF3 1484 aa12.27□□□□□ -0.44
LRP6-206ENST00000543091 SMARCA2P51531 1590 aa12.23□□□□□ -0.45
LRP6-206ENST00000543091 CHIC1Q5VXU3 224 aa12.22□□□□□ -0.45
LRP6-206ENST00000543091 ATP1B4Q9UN42 357 aaPredicted RBP12.19□□□□□ -0.46
LRP6-206ENST00000543091 MROH2BQ7Z745 1585 aa12.14□□□□□ -0.47
LRP6-206ENST00000543091 FBLN2P98095 1184 aa12.11□□□□□ -0.47
LRP6-206ENST00000543091 ERCC6Q03468 1493 aa12.11□□□□□ -0.47
LRP6-206ENST00000543091 ATAD2BQ9ULI0 1458 aa12.08□□□□□ -0.48
LRP6-206ENST00000543091 SMARCA4P51532 1647 aa12.07□□□□□ -0.48
LRP6-206ENST00000543091 TTBK1Q5TCY1 1321 aaPredicted RBP12.05□□□□□ -0.48
LRP6-206ENST00000543091 EIF4G1Q04637 1599 aaKnown RBP12.04□□□□□ -0.48
LRP6-206ENST00000543091 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.02□□□□□ -0.48
LRP6-206ENST00000543091 HNRNPUL2Q1KMD3 747 aaKnown RBP12.02□□□□□ -0.48
LRP6-206ENST00000543091 PDS5BQ9NTI5 1447 aa12.02□□□□□ -0.48
LRP6-206ENST00000543091 TOP2AP11388 1531 aaKnown RBP11.99□□□□□ -0.49
LRP6-206ENST00000543091 CSRNP3Q8WYN3 585 aa11.98□□□□□ -0.49
LRP6-206ENST00000543091 BICRAQ9NZM4 1560 aa11.97□□□□□ -0.49
LRP6-206ENST00000543091 NCAPD3P42695 1498 aa11.97□□□□□ -0.49
LRP6-206ENST00000543091 WIZO95785 1651 aa11.96□□□□□ -0.49
LRP6-206ENST00000543091 CADPSQ9ULU8 1353 aa11.95□□□□□ -0.5
LRP6-206ENST00000543091 CCDC88BA6NC98 1476 aa11.95□□□□□ -0.5
LRP6-206ENST00000543091 WRNQ14191 1432 aaPredicted RBP eCLIP11.94□□□□□ -0.5
LRP6-206ENST00000543091 CHMP7Q8WUX9 453 aaPredicted RBP11.9□□□□□ -0.5
LRP6-206ENST00000543091 CC2D2AQ9P2K1 1620 aa11.89□□□□□ -0.51
LRP6-206ENST00000543091 LOC105371045A0A1W2PR82 267 aa11.89□□□□□ -0.51
LRP6-206ENST00000543091 UNC13AQ9UPW8 1703 aa11.84□□□□□ -0.51
LRP6-206ENST00000543091 CEP164Q9UPV0 1460 aa11.82□□□□□ -0.52
LRP6-206ENST00000543091 KIF27Q86VH2 1401 aa11.82□□□□□ -0.52
LRP6-206ENST00000543091 HMGXB3Q12766 1538 aa11.82□□□□□ -0.52
LRP6-206ENST00000543091 MYT1LQ9UL68 1186 aa11.82□□□□□ -0.52
LRP6-206ENST00000543091 EEA1Q15075 1411 aa11.81□□□□□ -0.52
LRP6-206ENST00000543091 FANCD2Q9BXW9 1451 aa11.77□□□□□ -0.52
LRP6-206ENST00000543091 NPM1P06748 294 aaKnown RBP eCLIP11.77□□□□□ -0.53
LRP6-206ENST00000543091 DNAJC5BQ9UF47 199 aa11.77□□□□□ -0.53
LRP6-206ENST00000543091 ABCC8Q09428 1581 aa11.76□□□□□ -0.53
LRP6-206ENST00000543091 P3H3Q8IVL6 736 aa11.75□□□□□ -0.53
LRP6-206ENST00000543091 SOGA1O94964 1423 aa11.73□□□□□ -0.53
LRP6-206ENST00000543091 CDK11AQ9UQ88 783 aaPredicted RBP11.73□□□□□ -0.53
LRP6-206ENST00000543091 CUX2O14529 1486 aa11.72□□□□□ -0.53
LRP6-206ENST00000543091 PPARGC1BQ86YN6 1023 aaKnown RBP11.7□□□□□ -0.54
LRP6-206ENST00000543091 PCGF6Q9BYE7 350 aa11.67□□□□□ -0.54
LRP6-206ENST00000543091 CFTRP13569 1480 aa11.66□□□□□ -0.54
LRP6-206ENST00000543091 TDRD9Q8NDG6 1382 aaKnown RBP11.65□□□□□ -0.54
LRP6-206ENST00000543091 ITGAEP38570 1179 aa11.64□□□□□ -0.55
LRP6-206ENST00000543091 CARMIL1Q5VZK9 1371 aa11.63□□□□□ -0.55
LRP6-206ENST00000543091 ARID3CA6NKF2 412 aa11.63□□□□□ -0.55
LRP6-206ENST00000543091 PEG3Q9GZU2 1588 aa11.63□□□□□ -0.55
LRP6-206ENST00000543091 GOLGA3Q08378 1498 aa11.63□□□□□ -0.55
LRP6-206ENST00000543091 NESP48681 1621 aa11.61□□□□□ -0.55
LRP6-206ENST00000543091 MRC2Q9UBG0 1479 aa11.59□□□□□ -0.55
LRP6-206ENST00000543091 LAMC3Q9Y6N6 1575 aa11.59□□□□□ -0.55
LRP6-206ENST00000543091 FAM50AQ14320 339 aaKnown RBP11.58□□□□□ -0.56
LRP6-206ENST00000543091 TRIM26Q12899 539 aaPredicted RBP11.57□□□□□ -0.56
LRP6-206ENST00000543091 CLIP1P30622 1438 aa11.55□□□□□ -0.56
LRP6-206ENST00000543091 CCER1Q8TC90 406 aaPredicted RBP11.55□□□□□ -0.56
LRP6-206ENST00000543091 FGD5Q6ZNL6 1462 aa11.54□□□□□ -0.56
LRP6-206ENST00000543091 CARMIL2Q6F5E8 1435 aa11.51□□□□□ -0.57
LRP6-206ENST00000543091 TNIKQ9UKE5 1360 aa11.5□□□□□ -0.57
LRP6-206ENST00000543091 PLEKHD1A6NEE1 506 aa11.5□□□□□ -0.57
LRP6-206ENST00000543091 ZNF777Q9ULD5 760 aaPredicted RBP11.49□□□□□ -0.57
LRP6-206ENST00000543091 OSCARQ8IYS5 282 aa11.49□□□□□ -0.57
LRP6-206ENST00000543091 GAPVD1Q14C86 1478 aa11.48□□□□□ -0.57
LRP6-206ENST00000543091 IFT140Q96RY7 1462 aa11.48□□□□□ -0.57
LRP6-206ENST00000543091 MTUS2Q5JR59 1369 aa11.47□□□□□ -0.57
LRP6-206ENST00000543091 TOPBP1Q92547 1522 aa11.46□□□□□ -0.57
LRP6-206ENST00000543091 RAD54L2Q9Y4B4 1467 aa11.46□□□□□ -0.57
LRP6-206ENST00000543091 RAPGEF2Q9Y4G8 1499 aa11.46□□□□□ -0.58
LRP6-206ENST00000543091 ZEB1P37275 1124 aaPredicted RBP11.45□□□□□ -0.58
LRP6-206ENST00000543091 CEP162Q5TB80 1403 aa11.44□□□□□ -0.58
LRP6-206ENST00000543091 DNMBPQ6XZF7 1577 aa11.43□□□□□ -0.58
LRP6-206ENST00000543091 KCNH8Q96L42 1107 aa11.43□□□□□ -0.58
LRP6-206ENST00000543091 GRIN2BQ13224 1484 aa11.42□□□□□ -0.58
LRP6-206ENST00000543091 FHAD1B1AJZ9 1412 aa11.42□□□□□ -0.58
LRP6-206ENST00000543091 TRIM52Q96A61 297 aa11.41□□□□□ -0.58
LRP6-206ENST00000543091 AQRO60306 1485 aaKnown RBP eCLIP11.41□□□□□ -0.58
LRP6-206ENST00000543091 JPH4Q96JJ6 628 aa11.41□□□□□ -0.58
LRP6-206ENST00000543091 ESF1Q9H501 851 aaKnown RBP11.4□□□□□ -0.59
LRP6-206ENST00000543091 POLA1P09884 1462 aaPredicted RBP11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms