RNA–Protein interactions for RNA: ENST00000401642.7

SCFD2-202, Transcript of sec1 family domain containing 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCFD2, Length 3,176 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD2-202ENST00000401642 NISCHQ9Y2I1 1504 aa22.48■■□□□ 1.19
SCFD2-202ENST00000401642 SHROOM4Q9ULL8 1493 aa19.93■□□□□ 0.78
SCFD2-202ENST00000401642 DCAF8L2P0C7V8 631 aa19.64■□□□□ 0.73
SCFD2-202ENST00000401642 SUPT5HO00267 1087 aaKnown RBP19.56■□□□□ 0.72
SCFD2-202ENST00000401642 ZCCHC6Q5VYS8 1495 aaKnown RBP18.93■□□□□ 0.62
SCFD2-202ENST00000401642 CCDC180Q9P1Z9 1646 aa18.77■□□□□ 0.59
SCFD2-202ENST00000401642 CHIC1Q5VXU3 224 aa18.64■□□□□ 0.57
SCFD2-202ENST00000401642 MYO15BQ96JP2 1530 aa18.49■□□□□ 0.55
SCFD2-202ENST00000401642 LOC105371045A0A1W2PR82 267 aa18.39■□□□□ 0.53
SCFD2-202ENST00000401642 EHMT2Q96KQ7 1210 aa18.34■□□□□ 0.53
SCFD2-202ENST00000401642 PCGF6Q9BYE7 350 aa18.34■□□□□ 0.53
SCFD2-202ENST00000401642 FAM9AQ8IZU1 332 aaPredicted RBP18.21■□□□□ 0.51
SCFD2-202ENST00000401642 ABCC9O60706 1549 aa18.18■□□□□ 0.5
SCFD2-202ENST00000401642 SCRIBQ14160 1630 aa18.16■□□□□ 0.5
SCFD2-202ENST00000401642 DCAF1Q9Y4B6 1507 aa18.09■□□□□ 0.49
SCFD2-202ENST00000401642 PPARGC1BQ86YN6 1023 aaKnown RBP18.01■□□□□ 0.47
SCFD2-202ENST00000401642 TRIM41Q8WV44 630 aa18.01■□□□□ 0.47
SCFD2-202ENST00000401642 HRCP23327 699 aa18■□□□□ 0.47
SCFD2-202ENST00000401642 RSF1Q96T23 1441 aaPredicted RBP17.93■□□□□ 0.46
SCFD2-202ENST00000401642 CECR2Q9BXF3 1484 aa17.8■□□□□ 0.44
SCFD2-202ENST00000401642 RB1CC1Q8TDY2 1594 aa17.74■□□□□ 0.43
SCFD2-202ENST00000401642 TRIM26Q12899 539 aaPredicted RBP17.68■□□□□ 0.42
SCFD2-202ENST00000401642 TTBK1Q5TCY1 1321 aaPredicted RBP17.67■□□□□ 0.42
SCFD2-202ENST00000401642 PABPN1Q86U42 306 aaKnown RBP eCLIP17.63■□□□□ 0.41
SCFD2-202ENST00000401642 MROH2BQ7Z745 1585 aa17.62■□□□□ 0.41
SCFD2-202ENST00000401642 NACADO15069 1562 aa17.54■□□□□ 0.4
SCFD2-202ENST00000401642 WIZO95785 1651 aa17.51■□□□□ 0.39
SCFD2-202ENST00000401642 RANGAP1P46060 587 aaPredicted RBP17.33■□□□□ 0.36
SCFD2-202ENST00000401642 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.3■□□□□ 0.36
SCFD2-202ENST00000401642 UBTFP17480 764 aaKnown RBP17.29■□□□□ 0.36
SCFD2-202ENST00000401642 ABCC8Q09428 1581 aa17.27■□□□□ 0.35
SCFD2-202ENST00000401642 BAZ1AQ9NRL2 1556 aaPredicted RBP17.23■□□□□ 0.35
SCFD2-202ENST00000401642 PELP1Q8IZL8 1130 aaKnown RBP17.2■□□□□ 0.34
SCFD2-202ENST00000401642 CCER1Q8TC90 406 aaPredicted RBP17.2■□□□□ 0.34
SCFD2-202ENST00000401642 CCDC88BA6NC98 1476 aa17.19■□□□□ 0.34
SCFD2-202ENST00000401642 SOGA1O94964 1423 aa17.15■□□□□ 0.34
SCFD2-202ENST00000401642 ZEB1P37275 1124 aaPredicted RBP17.14■□□□□ 0.33
SCFD2-202ENST00000401642 SMARCA4P51532 1647 aa17.09■□□□□ 0.33
SCFD2-202ENST00000401642 RUSC2Q8N2Y8 1516 aa17.08■□□□□ 0.32
SCFD2-202ENST00000401642 CSRNP3Q8WYN3 585 aa17.08■□□□□ 0.32
SCFD2-202ENST00000401642 TOP2AP11388 1531 aaKnown RBP17.05■□□□□ 0.32
SCFD2-202ENST00000401642 SMARCA2P51531 1590 aa17.01■□□□□ 0.31
SCFD2-202ENST00000401642 UNC13AQ9UPW8 1703 aa17■□□□□ 0.31
SCFD2-202ENST00000401642 CEP162Q5TB80 1403 aa16.98■□□□□ 0.31
SCFD2-202ENST00000401642 HNRNPUL2Q1KMD3 747 aaKnown RBP16.97■□□□□ 0.31
SCFD2-202ENST00000401642 EIF4G1Q04637 1599 aaKnown RBP16.91■□□□□ 0.3
SCFD2-202ENST00000401642 WRNQ14191 1432 aaPredicted RBP eCLIP16.89■□□□□ 0.3
SCFD2-202ENST00000401642 BICRAQ9NZM4 1560 aa16.88■□□□□ 0.29
SCFD2-202ENST00000401642 APLP2Q06481 763 aa16.84■□□□□ 0.29
SCFD2-202ENST00000401642 TNIKQ9UKE5 1360 aa16.82■□□□□ 0.28
SCFD2-202ENST00000401642 BAZ1BQ9UIG0 1483 aaKnown RBP16.81■□□□□ 0.28
SCFD2-202ENST00000401642 ATAD2BQ9ULI0 1458 aa16.77■□□□□ 0.28
SCFD2-202ENST00000401642 GOLGA3Q08378 1498 aa16.74■□□□□ 0.27
SCFD2-202ENST00000401642 DIEXFQ68CQ4 756 aaKnown RBP16.73■□□□□ 0.27
SCFD2-202ENST00000401642 SYNJ1O43426 1573 aa16.71■□□□□ 0.27
SCFD2-202ENST00000401642 CLIP1P30622 1438 aa16.7■□□□□ 0.26
SCFD2-202ENST00000401642 SCAF1Q9H7N4 1312 aaKnown RBP16.69■□□□□ 0.26
SCFD2-202ENST00000401642 YTHDC1Q96MU7 727 aaKnown RBP16.69■□□□□ 0.26
SCFD2-202ENST00000401642 EEA1Q15075 1411 aa16.68■□□□□ 0.26
SCFD2-202ENST00000401642 ITGAEP38570 1179 aa16.67■□□□□ 0.26
SCFD2-202ENST00000401642 MYT1Q01538 1121 aa16.67■□□□□ 0.26
SCFD2-202ENST00000401642 RAPGEF2Q9Y4G8 1499 aa16.66■□□□□ 0.26
SCFD2-202ENST00000401642 CEP164Q9UPV0 1460 aa16.62■□□□□ 0.25
SCFD2-202ENST00000401642 ATP1B4Q9UN42 357 aaPredicted RBP16.59■□□□□ 0.25
SCFD2-202ENST00000401642 NEUROD1Q13562 356 aa16.58■□□□□ 0.24
SCFD2-202ENST00000401642 KANK4Q5T7N3 995 aaPredicted RBP16.53■□□□□ 0.24
SCFD2-202ENST00000401642 P3H3Q8IVL6 736 aa16.52■□□□□ 0.24
SCFD2-202ENST00000401642 ZNF316A6NFI3 1004 aaPredicted RBP16.51■□□□□ 0.23
SCFD2-202ENST00000401642 PEG3Q9GZU2 1588 aa16.51■□□□□ 0.23
SCFD2-202ENST00000401642 VPS8Q8N3P4 1428 aa16.48■□□□□ 0.23
SCFD2-202ENST00000401642 ACIN1Q9UKV3 1341 aaKnown RBP16.47■□□□□ 0.23
SCFD2-202ENST00000401642 GTF3C3Q9Y5Q9 886 aa16.45■□□□□ 0.22
SCFD2-202ENST00000401642 CENPBP07199 599 aaPredicted RBP16.42■□□□□ 0.22
SCFD2-202ENST00000401642 MIER1Q8N108 512 aa16.42■□□□□ 0.22
SCFD2-202ENST00000401642 KIF21BO75037 1637 aa16.4■□□□□ 0.22
SCFD2-202ENST00000401642 KIF27Q86VH2 1401 aa16.36■□□□□ 0.21
SCFD2-202ENST00000401642 CUX1P39880 1505 aa16.36■□□□□ 0.21
SCFD2-202ENST00000401642 TOP2BQ02880 1626 aa16.35■□□□□ 0.21
SCFD2-202ENST00000401642 NCAPD3P42695 1498 aa16.34■□□□□ 0.21
SCFD2-202ENST00000401642 FAM50AQ14320 339 aaKnown RBP16.32■□□□□ 0.2
SCFD2-202ENST00000401642 CUX2O14529 1486 aa16.31■□□□□ 0.2
SCFD2-202ENST00000401642 ARAP1Q96P48 1450 aa16.31■□□□□ 0.2
SCFD2-202ENST00000401642 PRXQ9BXM0 1461 aa16.28■□□□□ 0.2
SCFD2-202ENST00000401642 CFTRP13569 1480 aa16.24■□□□□ 0.19
SCFD2-202ENST00000401642 IGF1RP08069 1367 aa16.21■□□□□ 0.19
SCFD2-202ENST00000401642 CARMIL1Q5VZK9 1371 aa16.21■□□□□ 0.19
SCFD2-202ENST00000401642 CADPSQ9ULU8 1353 aa16.21■□□□□ 0.18
SCFD2-202ENST00000401642 DNAJC5BQ9UF47 199 aa16.2■□□□□ 0.18
SCFD2-202ENST00000401642 HMGXB3Q12766 1538 aa16.19■□□□□ 0.18
SCFD2-202ENST00000401642 BIVM-ERCC5R4GMW8 1640 aa16.18■□□□□ 0.18
SCFD2-202ENST00000401642 DHX57Q6P158 1386 aaKnown RBP16.18■□□□□ 0.18
SCFD2-202ENST00000401642 ARHGAP35Q9NRY4 1499 aa16.18■□□□□ 0.18
SCFD2-202ENST00000401642 ARID3CA6NKF2 412 aa16.18■□□□□ 0.18
SCFD2-202ENST00000401642 HIRIP3Q9BW71 556 aaPredicted RBP16.16■□□□□ 0.18
SCFD2-202ENST00000401642 FGD5Q6ZNL6 1462 aa16.16■□□□□ 0.18
SCFD2-202ENST00000401642 CCNB3Q8WWL7 1395 aa16.15■□□□□ 0.18
SCFD2-202ENST00000401642 RAD54L2Q9Y4B4 1467 aa16.14■□□□□ 0.17
SCFD2-202ENST00000401642 SIN3AQ96ST3 1273 aa16.14■□□□□ 0.17
SCFD2-202ENST00000401642 NESP48681 1621 aa16.13■□□□□ 0.17
SCFD2-202ENST00000401642 ERICH3Q5RHP9 1530 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms