RNA–Protein interactions for RNA: ENST00000376570.8

DDR1-227, Transcript of discoidin domain receptor tyrosine kinase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene DDR1, Length 3,820 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDR1-227ENST00000376570 NISCHQ9Y2I1 1504 aa22.32■■□□□ 1.16
DDR1-227ENST00000376570 DCAF8L2P0C7V8 631 aa21.34■■□□□ 1.01
DDR1-227ENST00000376570 SHROOM4Q9ULL8 1493 aa20.99■□□□□ 0.95
DDR1-227ENST00000376570 SUPT5HO00267 1087 aaKnown RBP20.75■□□□□ 0.91
DDR1-227ENST00000376570 EHMT2Q96KQ7 1210 aa20.02■□□□□ 0.8
DDR1-227ENST00000376570 FAM9AQ8IZU1 332 aaPredicted RBP19.51■□□□□ 0.71
DDR1-227ENST00000376570 PCGF6Q9BYE7 350 aa19.25■□□□□ 0.67
DDR1-227ENST00000376570 TTBK1Q5TCY1 1321 aaPredicted RBP19.21■□□□□ 0.67
DDR1-227ENST00000376570 LOC105371045A0A1W2PR82 267 aa19.19■□□□□ 0.66
DDR1-227ENST00000376570 CHIC1Q5VXU3 224 aa19.08■□□□□ 0.64
DDR1-227ENST00000376570 PPARGC1BQ86YN6 1023 aaKnown RBP19.07■□□□□ 0.64
DDR1-227ENST00000376570 RANGAP1P46060 587 aaPredicted RBP18.88■□□□□ 0.61
DDR1-227ENST00000376570 TRIM41Q8WV44 630 aa18.88■□□□□ 0.61
DDR1-227ENST00000376570 ABCC9O60706 1549 aa18.88■□□□□ 0.61
DDR1-227ENST00000376570 PABPN1Q86U42 306 aaKnown RBP eCLIP18.66■□□□□ 0.58
DDR1-227ENST00000376570 ZCCHC6Q5VYS8 1495 aaKnown RBP18.62■□□□□ 0.57
DDR1-227ENST00000376570 MYO15BQ96JP2 1530 aa18.52■□□□□ 0.56
DDR1-227ENST00000376570 SCRIBQ14160 1630 aa18.38■□□□□ 0.53
DDR1-227ENST00000376570 UBTFP17480 764 aaKnown RBP18.37■□□□□ 0.53
DDR1-227ENST00000376570 HRCP23327 699 aa18.37■□□□□ 0.53
DDR1-227ENST00000376570 CCDC180Q9P1Z9 1646 aa18.29■□□□□ 0.52
DDR1-227ENST00000376570 TRIM26Q12899 539 aaPredicted RBP18.18■□□□□ 0.5
DDR1-227ENST00000376570 CCER1Q8TC90 406 aaPredicted RBP18.18■□□□□ 0.5
DDR1-227ENST00000376570 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.15■□□□□ 0.5
DDR1-227ENST00000376570 ATP1B4Q9UN42 357 aaPredicted RBP18.08■□□□□ 0.48
DDR1-227ENST00000376570 APLP2Q06481 763 aa18.02■□□□□ 0.48
DDR1-227ENST00000376570 HNRNPUL2Q1KMD3 747 aaKnown RBP18.01■□□□□ 0.47
DDR1-227ENST00000376570 CECR2Q9BXF3 1484 aa17.97■□□□□ 0.47
DDR1-227ENST00000376570 RSF1Q96T23 1441 aaPredicted RBP17.97■□□□□ 0.47
DDR1-227ENST00000376570 ITGAEP38570 1179 aa17.95■□□□□ 0.46
DDR1-227ENST00000376570 YTHDC1Q96MU7 727 aaKnown RBP17.88■□□□□ 0.45
DDR1-227ENST00000376570 RB1CC1Q8TDY2 1594 aa17.7■□□□□ 0.42
DDR1-227ENST00000376570 MROH2BQ7Z745 1585 aa17.64■□□□□ 0.41
DDR1-227ENST00000376570 ZEB1P37275 1124 aaPredicted RBP17.63■□□□□ 0.41
DDR1-227ENST00000376570 P3H3Q8IVL6 736 aa17.63■□□□□ 0.41
DDR1-227ENST00000376570 CSRNP3Q8WYN3 585 aa17.63■□□□□ 0.41
DDR1-227ENST00000376570 DCAF1Q9Y4B6 1507 aa17.55■□□□□ 0.4
DDR1-227ENST00000376570 ARID3CA6NKF2 412 aa17.52■□□□□ 0.4
DDR1-227ENST00000376570 WIZO95785 1651 aa17.46■□□□□ 0.39
DDR1-227ENST00000376570 ABCC8Q09428 1581 aa17.46■□□□□ 0.39
DDR1-227ENST00000376570 SOGA1O94964 1423 aa17.44■□□□□ 0.38
DDR1-227ENST00000376570 CNGB1Q14028 1251 aaPredicted RBP17.42■□□□□ 0.38
DDR1-227ENST00000376570 DIEXFQ68CQ4 756 aaKnown RBP17.41■□□□□ 0.38
DDR1-227ENST00000376570 NACADO15069 1562 aa17.37■□□□□ 0.37
DDR1-227ENST00000376570 CCDC88BA6NC98 1476 aa17.35■□□□□ 0.37
DDR1-227ENST00000376570 FAM50AQ14320 339 aaKnown RBP17.35■□□□□ 0.37
DDR1-227ENST00000376570 PELP1Q8IZL8 1130 aaKnown RBP17.34■□□□□ 0.37
DDR1-227ENST00000376570 SCAF1Q9H7N4 1312 aaKnown RBP17.33■□□□□ 0.36
DDR1-227ENST00000376570 NEUROD1Q13562 356 aa17.31■□□□□ 0.36
DDR1-227ENST00000376570 RUSC2Q8N2Y8 1516 aa17.29■□□□□ 0.36
DDR1-227ENST00000376570 CENPBP07199 599 aaPredicted RBP17.27■□□□□ 0.35
DDR1-227ENST00000376570 CEP162Q5TB80 1403 aa17.23■□□□□ 0.35
DDR1-227ENST00000376570 GTF3C3Q9Y5Q9 886 aa17.22■□□□□ 0.35
DDR1-227ENST00000376570 WRNQ14191 1432 aaPredicted RBP eCLIP17.17■□□□□ 0.34
DDR1-227ENST00000376570 HIRIP3Q9BW71 556 aaPredicted RBP17.16■□□□□ 0.34
DDR1-227ENST00000376570 BAZ1AQ9NRL2 1556 aaPredicted RBP17.16■□□□□ 0.34
DDR1-227ENST00000376570 FBLN2P98095 1184 aa17.15■□□□□ 0.34
DDR1-227ENST00000376570 POLR3GLQ9BT43 218 aa17.11■□□□□ 0.33
DDR1-227ENST00000376570 BAZ1BQ9UIG0 1483 aaKnown RBP17.09■□□□□ 0.33
DDR1-227ENST00000376570 CLIP1P30622 1438 aa17.08■□□□□ 0.33
DDR1-227ENST00000376570 ZNF316A6NFI3 1004 aaPredicted RBP17.05■□□□□ 0.32
DDR1-227ENST00000376570 ACIN1Q9UKV3 1341 aaKnown RBP17.04■□□□□ 0.32
DDR1-227ENST00000376570 KANK4Q5T7N3 995 aaPredicted RBP17.02■□□□□ 0.32
DDR1-227ENST00000376570 MIER1Q8N108 512 aa16.99■□□□□ 0.31
DDR1-227ENST00000376570 CHIC2Q9UKJ5 165 aa16.98■□□□□ 0.31
DDR1-227ENST00000376570 BCANQ96GW7 911 aa16.97■□□□□ 0.31
DDR1-227ENST00000376570 TRIM52Q96A61 297 aa16.96■□□□□ 0.31
DDR1-227ENST00000376570 TNIKQ9UKE5 1360 aa16.94■□□□□ 0.3
DDR1-227ENST00000376570 GOLGA3Q08378 1498 aa16.92■□□□□ 0.3
DDR1-227ENST00000376570 SMARCA4P51532 1647 aa16.9■□□□□ 0.3
DDR1-227ENST00000376570 ZNF326Q5BKZ1 582 aaKnown RBP16.89■□□□□ 0.29
DDR1-227ENST00000376570 SENP3-EIF4A1A0A087X0R7 540 aa16.89■□□□□ 0.29
DDR1-227ENST00000376570 TOP2AP11388 1531 aaKnown RBP16.87■□□□□ 0.29
DDR1-227ENST00000376570 DNAJC5BQ9UF47 199 aa16.86■□□□□ 0.29
DDR1-227ENST00000376570 ZNF777Q9ULD5 760 aaPredicted RBP16.85■□□□□ 0.29
DDR1-227ENST00000376570 RAPGEF2Q9Y4G8 1499 aa16.85■□□□□ 0.29
DDR1-227ENST00000376570 SIN3AQ96ST3 1273 aa16.85■□□□□ 0.29
DDR1-227ENST00000376570 DDX10Q13206 875 aaKnown RBP16.83■□□□□ 0.28
DDR1-227ENST00000376570 ATAD2BQ9ULI0 1458 aa16.83■□□□□ 0.28
DDR1-227ENST00000376570 SMARCA2P51531 1590 aa16.82■□□□□ 0.28
DDR1-227ENST00000376570 RRP7BPQ9NSQ0 103 aa16.77■□□□□ 0.28
DDR1-227ENST00000376570 CEP164Q9UPV0 1460 aa16.76■□□□□ 0.27
DDR1-227ENST00000376570 MYT1LQ9UL68 1186 aa16.75■□□□□ 0.27
DDR1-227ENST00000376570 CUX2O14529 1486 aa16.74■□□□□ 0.27
DDR1-227ENST00000376570 TDRD9Q8NDG6 1382 aaKnown RBP16.71■□□□□ 0.27
DDR1-227ENST00000376570 KIF27Q86VH2 1401 aa16.69■□□□□ 0.26
DDR1-227ENST00000376570 EEA1Q15075 1411 aa16.68■□□□□ 0.26
DDR1-227ENST00000376570 BICRAQ9NZM4 1560 aa16.64■□□□□ 0.25
DDR1-227ENST00000376570 CARMIL1Q5VZK9 1371 aa16.63■□□□□ 0.25
DDR1-227ENST00000376570 SENP3Q9H4L4 574 aaPredicted RBP16.62■□□□□ 0.25
DDR1-227ENST00000376570 UNC13AQ9UPW8 1703 aa16.62■□□□□ 0.25
DDR1-227ENST00000376570 FOXD1Q16676 465 aa16.62■□□□□ 0.25
DDR1-227ENST00000376570 VPS8Q8N3P4 1428 aa16.62■□□□□ 0.25
DDR1-227ENST00000376570 KCNH8Q96L42 1107 aa16.61■□□□□ 0.25
DDR1-227ENST00000376570 SYNJ1O43426 1573 aa16.61■□□□□ 0.25
DDR1-227ENST00000376570 MTUS2Q5JR59 1369 aa16.59■□□□□ 0.25
DDR1-227ENST00000376570 NEFLP07196 543 aa16.56■□□□□ 0.24
DDR1-227ENST00000376570 IRX6P78412 446 aaPredicted RBP16.56■□□□□ 0.24
DDR1-227ENST00000376570 MYT1Q01538 1121 aa16.52■□□□□ 0.24
DDR1-227ENST00000376570 FHOD3Q2V2M9 1422 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms