Protein–RNA interactions for Protein: Q9NRR4

DROSHA, Ribonuclease 3, humanhuman

Known RBP eCLIP

Length 1,374 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DROSHAQ9NRR4 NUP214-201ENST00000359428 7600 ntAPPRIS P3 TSL 1 (best) BASIC9.57□□□□□ -0.883e-13■■□□□ 11.8
DROSHAQ9NRR4 NUP214-202ENST00000411637 7538 ntAPPRIS ALT2 TSL 1 (best) BASIC8.63□□□□□ -1.033e-13■■□□□ 11.8
DROSHAQ9NRR4 PFKFB4-206ENST00000422701 636 ntTSL 323.79■■□□□ 1.41e-6■■□□□ 11.7
DROSHAQ9NRR4 PFKFB4-215ENST00000496767 779 ntTSL 523.27■■□□□ 1.321e-6■■□□□ 11.7
DROSHAQ9NRR4 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.381e-6■■□□□ 11.7
DROSHAQ9NRR4 TMEM74B-202ENST00000429036 983 ntAPPRIS ALT2 TSL 324.1■■□□□ 1.451e-7■■□□□ 11.7
DROSHAQ9NRR4 ARRDC1-AS1-202ENST00000496793 1424 ntTSL 237.52■■■■□ 3.62e-6■■□□□ 11.7
DROSHAQ9NRR4 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC34.71■■■■□ 3.153e-6■■□□□ 11.7
DROSHAQ9NRR4 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC33.44■■■□□ 2.942e-6■■□□□ 11.7
DROSHAQ9NRR4 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC32.94■■■□□ 2.862e-6■■□□□ 11.7
DROSHAQ9NRR4 BTF3-207ENST00000512257 887 ntTSL 1 (best)28.04■■■□□ 2.083e-6■■□□□ 11.7
DROSHAQ9NRR4 BTF3-206ENST00000510787 610 ntTSL 225.83■■□□□ 1.733e-6■■□□□ 11.7
DROSHAQ9NRR4 BTF3-202ENST00000380591 1237 ntTSL 1 (best) BASIC19.45■□□□□ 0.73e-6■■□□□ 11.7
DROSHAQ9NRR4 BTF3-201ENST00000335895 897 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.243e-6■■□□□ 11.7
DROSHAQ9NRR4 BTF3-209ENST00000514505 740 ntTSL 59.09□□□□□ -0.953e-6■■□□□ 11.7
DROSHAQ9NRR4 BTF3-208ENST00000514360 1177 ntTSL 28.93□□□□□ -0.983e-6■■□□□ 11.7
DROSHAQ9NRR4 BTF3-204ENST00000508901 954 ntTSL 27.97□□□□□ -1.133e-6■■□□□ 11.7
DROSHAQ9NRR4 BTF3-203ENST00000507081 377 ntTSL 57.77□□□□□ -1.173e-6■■□□□ 11.7
DROSHAQ9NRR4 TMC6-219ENST00000591594 614 ntTSL 325.69■■□□□ 1.71e-7■■□□□ 11.7
DROSHAQ9NRR4 PHF19-211ENST00000474402 578 ntTSL 416.95■□□□□ 0.32e-6■■□□□ 11.7
DROSHAQ9NRR4 HNRNPF-206ENST00000498176 715 ntTSL 1 (best)34.26■■■■□ 3.085e-9■■□□□ 11.7
DROSHAQ9NRR4 CDK6-205ENST00000491250 558 ntTSL 432.33■■■□□ 2.775e-9■■□□□ 11.7
DROSHAQ9NRR4 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.615e-9■■□□□ 11.7
DROSHAQ9NRR4 HNRNPF-205ENST00000477108 636 ntTSL 1 (best)23.76■■□□□ 1.395e-9■■□□□ 11.7
DROSHAQ9NRR4 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.285e-9■■□□□ 11.7
DROSHAQ9NRR4 HNRNPF-207ENST00000544000 2676 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.535e-9■■□□□ 11.7
DROSHAQ9NRR4 HNRNPF-203ENST00000357065 2617 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.15e-9■■□□□ 11.7
DROSHAQ9NRR4 CDK6-201ENST00000265734 11612 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.585e-9■■□□□ 11.7
DROSHAQ9NRR4 CCNB1-202ENST00000503507 750 ntTSL 523.57■■□□□ 1.364e-20■■□□□ 11.7
DROSHAQ9NRR4 CCNB1-204ENST00000506572 1331 ntTSL 1 (best)23.39■■□□□ 1.334e-20■■□□□ 11.7
DROSHAQ9NRR4 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.014e-20■■□□□ 11.7
DROSHAQ9NRR4 CCNB1-203ENST00000505500 1190 ntTSL 1 (best)11.62□□□□□ -0.554e-20■■□□□ 11.7
DROSHAQ9NRR4 CCNB1-206ENST00000508407 780 ntTSL 211.32□□□□□ -0.64e-20■■□□□ 11.7
DROSHAQ9NRR4 GOLGA3-207ENST00000545875 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.097e-7■■□□□ 11.7
DROSHAQ9NRR4 FDFT1-203ENST00000446331 1558 ntTSL 235.81■■■■□ 3.323e-30■■□□□ 11.7
DROSHAQ9NRR4 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.693e-30■■□□□ 11.7
DROSHAQ9NRR4 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC30.56■■■□□ 2.483e-30■■□□□ 11.7
DROSHAQ9NRR4 FDFT1-206ENST00000525571 810 ntTSL 329.44■■■□□ 2.33e-30■■□□□ 11.7
DROSHAQ9NRR4 FDFT1-207ENST00000525607 1773 ntTSL 228.78■■■□□ 2.23e-30■■□□□ 11.7
DROSHAQ9NRR4 FDFT1-217ENST00000530337 741 ntTSL 328.12■■■□□ 2.093e-30■■□□□ 11.7
DROSHAQ9NRR4 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC26.84■■□□□ 1.893e-30■■□□□ 11.7
DROSHAQ9NRR4 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC23.41■■□□□ 1.343e-30■■□□□ 11.7
DROSHAQ9NRR4 FDFT1-215ENST00000529464 932 ntTSL 1 (best)22.42■■□□□ 1.183e-30■■□□□ 11.7
DROSHAQ9NRR4 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC22.13■■□□□ 1.133e-30■■□□□ 11.7
DROSHAQ9NRR4 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.093e-30■■□□□ 11.7
DROSHAQ9NRR4 FDFT1-204ENST00000525283 898 ntTSL 319.87■□□□□ 0.773e-30■■□□□ 11.7
DROSHAQ9NRR4 FDFT1-211ENST00000527045 642 ntTSL 1 (best)14.56□□□□□ -0.083e-30■■□□□ 11.7
DROSHAQ9NRR4 FDFT1-222ENST00000538689 2289 ntTSL 2 BASIC10.51□□□□□ -0.733e-30■■□□□ 11.7
DROSHAQ9NRR4 XPO6-209ENST00000566073 715 ntTSL 532.65■■■□□ 2.828e-7■■□□□ 11.7
DROSHAQ9NRR4 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.798e-7■■□□□ 11.7
DROSHAQ9NRR4 COL9A3-204ENST00000463487 760 ntTSL 530.25■■■□□ 2.433e-9■■□□□ 11.7
DROSHAQ9NRR4 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.113e-6■■□□□ 11.7
DROSHAQ9NRR4 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.63e-6■■□□□ 11.7
DROSHAQ9NRR4 NDUFAB1-203ENST00000562133 503 ntTSL 224.05■■□□□ 1.443e-6■■□□□ 11.7
DROSHAQ9NRR4 NDUFAB1-202ENST00000484769 843 ntTSL 320.68■□□□□ 0.93e-6■■□□□ 11.7
DROSHAQ9NRR4 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.391e-6■■□□□ 11.7
DROSHAQ9NRR4 TIMM44-204ENST00000595876 1206 ntTSL 1 (best)22.76■■□□□ 1.231e-6■■□□□ 11.7
DROSHAQ9NRR4 TIMM44-203ENST00000595831 1797 ntTSL 522.53■■□□□ 1.21e-6■■□□□ 11.7
DROSHAQ9NRR4 JPT2-211ENST00000567717 857 ntTSL 327.62■■■□□ 2.013e-6■■□□□ 11.7
DROSHAQ9NRR4 JPT2-214ENST00000569765 782 ntTSL 2 BASIC20.93■□□□□ 0.943e-6■■□□□ 11.7
DROSHAQ9NRR4 JPT2-203ENST00000382711 894 ntTSL 4 BASIC19.93■□□□□ 0.783e-6■■□□□ 11.7
DROSHAQ9NRR4 JPT2-210ENST00000566925 570 ntTSL 416.03■□□□□ 0.163e-6■■□□□ 11.7
DROSHAQ9NRR4 AL031708.1-201ENST00000454337 5326 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.023e-6■■□□□ 11.7
DROSHAQ9NRR4 LPCAT1-205ENST00000513757 547 ntTSL 415.62■□□□□ 0.098e-12■■□□□ 11.7
DROSHAQ9NRR4 ROR2-201ENST00000375708 4096 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.018e-7■■□□□ 11.7
DROSHAQ9NRR4 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC30.21■■■□□ 2.432e-24■■□□□ 11.7
DROSHAQ9NRR4 SLC16A3-209ENST00000580098 859 ntTSL 229.98■■■□□ 2.392e-24■■□□□ 11.7
DROSHAQ9NRR4 HNRNPA3-202ENST00000411529 5688 ntAPPRIS ALT2 TSL 2 BASIC11.63□□□□□ -0.554e-10■■□□□ 11.7
DROSHAQ9NRR4 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC38.19■■■■□ 3.72e-12■■□□□ 11.7
DROSHAQ9NRR4 LRRC61-203ENST00000463441 667 ntTSL 237.88■■■■□ 3.653e-6■■□□□ 11.7
DROSHAQ9NRR4 LRRC61-204ENST00000471872 653 ntTSL 422.09■■□□□ 1.133e-6■■□□□ 11.7
DROSHAQ9NRR4 CDC34-203ENST00000586788 900 ntTSL 237.79■■■■□ 3.643e-7■■□□□ 11.7
DROSHAQ9NRR4 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC37.28■■■■□ 3.563e-7■■□□□ 11.7
DROSHAQ9NRR4 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC34.67■■■■□ 3.143e-7■■□□□ 11.7
DROSHAQ9NRR4 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC33.88■■■■□ 3.013e-7■■□□□ 11.7
DROSHAQ9NRR4 MSMO1-205ENST00000507013 973 ntTSL 232.93■■■□□ 2.863e-7■■□□□ 11.7
DROSHAQ9NRR4 TMOD3-203ENST00000558455 447 ntTSL 332.08■■■□□ 2.733e-7■■□□□ 11.7
DROSHAQ9NRR4 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC30.51■■■□□ 2.472e-9■■□□□ 11.7
DROSHAQ9NRR4 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.423e-7■■□□□ 11.7
DROSHAQ9NRR4 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC30.14■■■□□ 2.423e-7■■□□□ 11.7
DROSHAQ9NRR4 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC28.95■■■□□ 2.233e-7■■□□□ 11.7
DROSHAQ9NRR4 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.13e-7■■□□□ 11.7
DROSHAQ9NRR4 KDM5B-205ENST00000467487 529 ntTSL 327.64■■■□□ 2.023e-7■■□□□ 11.7
DROSHAQ9NRR4 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC27.06■■□□□ 1.923e-7■■□□□ 11.7
DROSHAQ9NRR4 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC26.07■■□□□ 1.763e-7■■□□□ 11.7
DROSHAQ9NRR4 BRD9-201ENST00000466684 1417 ntTSL 225.77■■□□□ 1.722e-9■■□□□ 11.7
DROSHAQ9NRR4 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC24.8■■□□□ 1.563e-7■■□□□ 11.7
DROSHAQ9NRR4 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC24.78■■□□□ 1.563e-7■■□□□ 11.7
DROSHAQ9NRR4 TNRC6B-204ENST00000441751 415 ntTSL 524.63■■□□□ 1.533e-7■■□□□ 11.7
DROSHAQ9NRR4 BRD9-212ENST00000495265 2843 ntTSL 224.57■■□□□ 1.522e-9■■□□□ 11.7
DROSHAQ9NRR4 SNUPN-210ENST00000568162 759 ntTSL 324.41■■□□□ 1.53e-7■■□□□ 11.7
DROSHAQ9NRR4 SNUPN-211ENST00000569817 1023 ntTSL 323.94■■□□□ 1.423e-7■■□□□ 11.7
DROSHAQ9NRR4 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.43e-7■■□□□ 11.7
DROSHAQ9NRR4 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC23.73■■□□□ 1.393e-7■■□□□ 11.7
DROSHAQ9NRR4 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC23.29■■□□□ 1.323e-7■■□□□ 11.7
DROSHAQ9NRR4 AC133540.1-201ENST00000620845 1019 ntBASIC22.29■■□□□ 1.163e-7■■□□□ 11.7
DROSHAQ9NRR4 BRD9-208ENST00000489816 3170 ntTSL 1 (best)22.21■■□□□ 1.152e-9■■□□□ 11.7
DROSHAQ9NRR4 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC22.21■■□□□ 1.153e-7■■□□□ 11.7
DROSHAQ9NRR4 NPRL3-206ENST00000464069 551 ntTSL 221.87■■□□□ 1.093e-7■■□□□ 11.7
DROSHAQ9NRR4 ZBED1-204ENST00000461691 947 ntTSL 221.73■■□□□ 1.073e-7■■□□□ 11.7
Retrieved 100 of 16,331 protein–RNA pairs in 87.6 ms