Protein–RNA interactions for Protein: Q7Z3D4

LYSMD3, LysM and putative peptidoglycan-binding domain-containing protein 3, humanhuman

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD3Q7Z3D4 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC18.12■□□□□ 0.49
LYSMD3Q7Z3D4 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LYSMD3Q7Z3D4 COPS8-203ENST00000409334 794 ntTSL 5 BASIC18.12■□□□□ 0.49
LYSMD3Q7Z3D4 TSPY22P-201ENST00000427496 604 ntBASIC18.12■□□□□ 0.49
LYSMD3Q7Z3D4 UPK3BP1-201ENST00000428678 509 ntBASIC18.12■□□□□ 0.49
LYSMD3Q7Z3D4 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LYSMD3Q7Z3D4 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC18.12■□□□□ 0.49
LYSMD3Q7Z3D4 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC18.12■□□□□ 0.49
LYSMD3Q7Z3D4 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC18.12■□□□□ 0.49
LYSMD3Q7Z3D4 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LYSMD3Q7Z3D4 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC18.12■□□□□ 0.49
LYSMD3Q7Z3D4 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
LYSMD3Q7Z3D4 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
LYSMD3Q7Z3D4 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
LYSMD3Q7Z3D4 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC18.12■□□□□ 0.49
LYSMD3Q7Z3D4 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LYSMD3Q7Z3D4 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
LYSMD3Q7Z3D4 NOC2LP2-201ENST00000407594 1944 ntBASIC18.11■□□□□ 0.49
LYSMD3Q7Z3D4 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
LYSMD3Q7Z3D4 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LYSMD3Q7Z3D4 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
LYSMD3Q7Z3D4 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
LYSMD3Q7Z3D4 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC18.11■□□□□ 0.49
LYSMD3Q7Z3D4 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
LYSMD3Q7Z3D4 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LYSMD3Q7Z3D4 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC18.11■□□□□ 0.49
LYSMD3Q7Z3D4 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC18.11■□□□□ 0.49
LYSMD3Q7Z3D4 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC18.11■□□□□ 0.49
LYSMD3Q7Z3D4 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC18.11■□□□□ 0.49
LYSMD3Q7Z3D4 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC18.11■□□□□ 0.49
LYSMD3Q7Z3D4 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC18.11■□□□□ 0.49
LYSMD3Q7Z3D4 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
LYSMD3Q7Z3D4 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
LYSMD3Q7Z3D4 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
LYSMD3Q7Z3D4 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
LYSMD3Q7Z3D4 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
LYSMD3Q7Z3D4 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
LYSMD3Q7Z3D4 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC18.11■□□□□ 0.49
LYSMD3Q7Z3D4 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LYSMD3Q7Z3D4 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
LYSMD3Q7Z3D4 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC18.11■□□□□ 0.49
LYSMD3Q7Z3D4 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
LYSMD3Q7Z3D4 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
LYSMD3Q7Z3D4 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LYSMD3Q7Z3D4 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LYSMD3Q7Z3D4 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC18.1■□□□□ 0.49
LYSMD3Q7Z3D4 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LYSMD3Q7Z3D4 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LYSMD3Q7Z3D4 CD276-201ENST00000318424 2738 ntTSL 5 BASIC18.1■□□□□ 0.49
LYSMD3Q7Z3D4 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LYSMD3Q7Z3D4 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC18.1■□□□□ 0.49
LYSMD3Q7Z3D4 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
LYSMD3Q7Z3D4 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC18.1■□□□□ 0.49
LYSMD3Q7Z3D4 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LYSMD3Q7Z3D4 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LYSMD3Q7Z3D4 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LYSMD3Q7Z3D4 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LYSMD3Q7Z3D4 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
LYSMD3Q7Z3D4 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LYSMD3Q7Z3D4 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC18.1■□□□□ 0.49
LYSMD3Q7Z3D4 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LYSMD3Q7Z3D4 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LYSMD3Q7Z3D4 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC18.1■□□□□ 0.49
LYSMD3Q7Z3D4 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LYSMD3Q7Z3D4 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC18.1■□□□□ 0.49
LYSMD3Q7Z3D4 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC18.1■□□□□ 0.49
LYSMD3Q7Z3D4 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC18.1■□□□□ 0.49
LYSMD3Q7Z3D4 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LYSMD3Q7Z3D4 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LYSMD3Q7Z3D4 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
LYSMD3Q7Z3D4 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LYSMD3Q7Z3D4 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
LYSMD3Q7Z3D4 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LYSMD3Q7Z3D4 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC18.1■□□□□ 0.49
LYSMD3Q7Z3D4 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC18.1■□□□□ 0.49
LYSMD3Q7Z3D4 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LYSMD3Q7Z3D4 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC18.09■□□□□ 0.49
LYSMD3Q7Z3D4 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
LYSMD3Q7Z3D4 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC18.09■□□□□ 0.49
LYSMD3Q7Z3D4 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
LYSMD3Q7Z3D4 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
LYSMD3Q7Z3D4 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
LYSMD3Q7Z3D4 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
LYSMD3Q7Z3D4 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LYSMD3Q7Z3D4 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC18.09■□□□□ 0.49
LYSMD3Q7Z3D4 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
LYSMD3Q7Z3D4 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
LYSMD3Q7Z3D4 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
LYSMD3Q7Z3D4 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LYSMD3Q7Z3D4 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC18.09■□□□□ 0.49
LYSMD3Q7Z3D4 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LYSMD3Q7Z3D4 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LYSMD3Q7Z3D4 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC18.09■□□□□ 0.49
LYSMD3Q7Z3D4 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LYSMD3Q7Z3D4 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC18.09■□□□□ 0.49
LYSMD3Q7Z3D4 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC18.09■□□□□ 0.49
LYSMD3Q7Z3D4 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
LYSMD3Q7Z3D4 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LYSMD3Q7Z3D4 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LYSMD3Q7Z3D4 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms