RNA–Protein interactions for RNA: ENST00000284767.9

PDLIM3-201, Transcript of PDZ and LIM domain 3, humanhuman

TSL 5 BASIC

Gene PDLIM3, Length 2,589 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-201ENST00000284767 NISCHQ9Y2I1 1504 aa39.7■■■■□ 3.95
PDLIM3-201ENST00000284767 CCDC180Q9P1Z9 1646 aa34.18■■■■□ 3.06
PDLIM3-201ENST00000284767 ZCCHC6Q5VYS8 1495 aaKnown RBP33.42■■■□□ 2.94
PDLIM3-201ENST00000284767 SHROOM4Q9ULL8 1493 aa33.2■■■□□ 2.9
PDLIM3-201ENST00000284767 DCAF8L2P0C7V8 631 aa33.12■■■□□ 2.89
PDLIM3-201ENST00000284767 DCAF1Q9Y4B6 1507 aa32.58■■■□□ 2.81
PDLIM3-201ENST00000284767 ABCC9O60706 1549 aa32.38■■■□□ 2.77
PDLIM3-201ENST00000284767 SUPT5HO00267 1087 aaKnown RBP32.13■■■□□ 2.73
PDLIM3-201ENST00000284767 MYO15BQ96JP2 1530 aa31.96■■■□□ 2.71
PDLIM3-201ENST00000284767 SCRIBQ14160 1630 aa31.88■■■□□ 2.69
PDLIM3-201ENST00000284767 NACADO15069 1562 aa31.79■■■□□ 2.68
PDLIM3-201ENST00000284767 RB1CC1Q8TDY2 1594 aa31.46■■■□□ 2.63
PDLIM3-201ENST00000284767 RSF1Q96T23 1441 aaPredicted RBP31.08■■■□□ 2.57
PDLIM3-201ENST00000284767 CECR2Q9BXF3 1484 aa31.04■■■□□ 2.56
PDLIM3-201ENST00000284767 UNC13AQ9UPW8 1703 aa30.99■■■□□ 2.55
PDLIM3-201ENST00000284767 MROH2BQ7Z745 1585 aa30.83■■■□□ 2.53
PDLIM3-201ENST00000284767 CHIC1Q5VXU3 224 aa30.83■■■□□ 2.53
PDLIM3-201ENST00000284767 PABPN1Q86U42 306 aaKnown RBP eCLIP30.77■■■□□ 2.52
PDLIM3-201ENST00000284767 BICRAQ9NZM4 1560 aa30.65■■■□□ 2.5
PDLIM3-201ENST00000284767 WIZO95785 1651 aa30.63■■■□□ 2.49
PDLIM3-201ENST00000284767 BAZ1AQ9NRL2 1556 aaPredicted RBP30.56■■■□□ 2.48
PDLIM3-201ENST00000284767 SMARCA4P51532 1647 aa30.43■■■□□ 2.46
PDLIM3-201ENST00000284767 TOP2AP11388 1531 aaKnown RBP30.12■■■□□ 2.41
PDLIM3-201ENST00000284767 HRCP23327 699 aa30.04■■■□□ 2.4
PDLIM3-201ENST00000284767 TRIM41Q8WV44 630 aa29.99■■■□□ 2.39
PDLIM3-201ENST00000284767 CCDC88BA6NC98 1476 aa29.97■■■□□ 2.39
PDLIM3-201ENST00000284767 SMARCA2P51531 1590 aa29.94■■■□□ 2.38
PDLIM3-201ENST00000284767 LOC105371045A0A1W2PR82 267 aa29.88■■■□□ 2.37
PDLIM3-201ENST00000284767 PEG3Q9GZU2 1588 aa29.88■■■□□ 2.37
PDLIM3-201ENST00000284767 ATAD2BQ9ULI0 1458 aa29.85■■■□□ 2.37
PDLIM3-201ENST00000284767 EIF4G1Q04637 1599 aaKnown RBP29.84■■■□□ 2.37
PDLIM3-201ENST00000284767 FAM9AQ8IZU1 332 aaPredicted RBP29.72■■■□□ 2.35
PDLIM3-201ENST00000284767 BAZ1BQ9UIG0 1483 aaKnown RBP29.71■■■□□ 2.35
PDLIM3-201ENST00000284767 ABCC8Q09428 1581 aa29.63■■■□□ 2.33
PDLIM3-201ENST00000284767 PCGF6Q9BYE7 350 aa29.61■■■□□ 2.33
PDLIM3-201ENST00000284767 EHMT2Q96KQ7 1210 aa29.5■■■□□ 2.31
PDLIM3-201ENST00000284767 NCAPD3P42695 1498 aa29.42■■■□□ 2.3
PDLIM3-201ENST00000284767 HMGXB3Q12766 1538 aa29.35■■■□□ 2.29
PDLIM3-201ENST00000284767 WRNQ14191 1432 aaPredicted RBP eCLIP29.21■■■□□ 2.27
PDLIM3-201ENST00000284767 PPARGC1BQ86YN6 1023 aaKnown RBP29.17■■■□□ 2.26
PDLIM3-201ENST00000284767 CC2D2AQ9P2K1 1620 aa29.16■■■□□ 2.26
PDLIM3-201ENST00000284767 SOGA1O94964 1423 aa29.16■■■□□ 2.26
PDLIM3-201ENST00000284767 SYNJ1O43426 1573 aa29.13■■■□□ 2.25
PDLIM3-201ENST00000284767 RUSC2Q8N2Y8 1516 aa29.09■■■□□ 2.25
PDLIM3-201ENST00000284767 TRIM26Q12899 539 aaPredicted RBP29.07■■■□□ 2.24
PDLIM3-201ENST00000284767 CFTRP13569 1480 aa28.94■■■□□ 2.22
PDLIM3-201ENST00000284767 CSRNP3Q8WYN3 585 aa28.89■■■□□ 2.21
PDLIM3-201ENST00000284767 TOP2BQ02880 1626 aa28.83■■■□□ 2.21
PDLIM3-201ENST00000284767 EEA1Q15075 1411 aa28.82■■■□□ 2.2
PDLIM3-201ENST00000284767 CADPSQ9ULU8 1353 aa28.78■■■□□ 2.2
PDLIM3-201ENST00000284767 CUX1P39880 1505 aa28.76■■■□□ 2.2
PDLIM3-201ENST00000284767 BIVM-ERCC5R4GMW8 1640 aa28.75■■■□□ 2.19
PDLIM3-201ENST00000284767 ZEB1P37275 1124 aaPredicted RBP28.72■■■□□ 2.19
PDLIM3-201ENST00000284767 DNAJC5BQ9UF47 199 aa28.7■■■□□ 2.19
PDLIM3-201ENST00000284767 UBTFP17480 764 aaKnown RBP28.69■■■□□ 2.18
PDLIM3-201ENST00000284767 PRDM2Q13029 1718 aa28.66■■■□□ 2.18
PDLIM3-201ENST00000284767 NESP48681 1621 aa28.61■■■□□ 2.17
PDLIM3-201ENST00000284767 GOLGA3Q08378 1498 aa28.6■■■□□ 2.17
PDLIM3-201ENST00000284767 TNIKQ9UKE5 1360 aa28.6■■■□□ 2.17
PDLIM3-201ENST00000284767 CEP162Q5TB80 1403 aa28.6■■■□□ 2.17
PDLIM3-201ENST00000284767 CEP164Q9UPV0 1460 aa28.54■■■□□ 2.16
PDLIM3-201ENST00000284767 FANCD2Q9BXW9 1451 aa28.51■■■□□ 2.15
PDLIM3-201ENST00000284767 KIF21BO75037 1637 aa28.5■■■□□ 2.15
PDLIM3-201ENST00000284767 RAPGEF2Q9Y4G8 1499 aa28.5■■■□□ 2.15
PDLIM3-201ENST00000284767 FGD5Q6ZNL6 1462 aa28.38■■■□□ 2.13
PDLIM3-201ENST00000284767 KIF27Q86VH2 1401 aa28.38■■■□□ 2.13
PDLIM3-201ENST00000284767 RANGAP1P46060 587 aaPredicted RBP28.37■■■□□ 2.13
PDLIM3-201ENST00000284767 CUX2O14529 1486 aa28.31■■■□□ 2.12
PDLIM3-201ENST00000284767 PRXQ9BXM0 1461 aa28.31■■■□□ 2.12
PDLIM3-201ENST00000284767 TTBK1Q5TCY1 1321 aaPredicted RBP28.3■■■□□ 2.12
PDLIM3-201ENST00000284767 LAMC3Q9Y6N6 1575 aa28.29■■■□□ 2.12
PDLIM3-201ENST00000284767 CLIP1P30622 1438 aa28.25■■■□□ 2.11
PDLIM3-201ENST00000284767 TOPBP1Q92547 1522 aa28.23■■■□□ 2.11
PDLIM3-201ENST00000284767 DNMBPQ6XZF7 1577 aa28.23■■■□□ 2.11
PDLIM3-201ENST00000284767 RAD54L2Q9Y4B4 1467 aa28.21■■■□□ 2.11
PDLIM3-201ENST00000284767 ERICH3Q5RHP9 1530 aa28.2■■■□□ 2.1
PDLIM3-201ENST00000284767 IGF1RP08069 1367 aa28.17■■■□□ 2.1
PDLIM3-201ENST00000284767 POLA1P09884 1462 aaPredicted RBP28.17■■■□□ 2.1
PDLIM3-201ENST00000284767 URB2Q14146 1524 aaKnown RBP28.16■■■□□ 2.1
PDLIM3-201ENST00000284767 PDS5BQ9NTI5 1447 aa28.13■■■□□ 2.09
PDLIM3-201ENST00000284767 KIF21AQ7Z4S6 1674 aa28.11■■■□□ 2.09
PDLIM3-201ENST00000284767 PELP1Q8IZL8 1130 aaKnown RBP28.08■■■□□ 2.09
PDLIM3-201ENST00000284767 CARMIL1Q5VZK9 1371 aa28.02■■■□□ 2.08
PDLIM3-201ENST00000284767 ABCA10Q8WWZ4 1543 aa28.02■■■□□ 2.08
PDLIM3-201ENST00000284767 VPS8Q8N3P4 1428 aa28.01■■■□□ 2.07
PDLIM3-201ENST00000284767 ARAP1Q96P48 1450 aa27.92■■■□□ 2.06
PDLIM3-201ENST00000284767 TDRD9Q8NDG6 1382 aaKnown RBP27.92■■■□□ 2.06
PDLIM3-201ENST00000284767 SCAF1Q9H7N4 1312 aaKnown RBP27.9■■■□□ 2.06
PDLIM3-201ENST00000284767 WDR97A6NE52 1622 aa27.86■■■□□ 2.05
PDLIM3-201ENST00000284767 ARHGAP35Q9NRY4 1499 aa27.83■■■□□ 2.05
PDLIM3-201ENST00000284767 APLP2Q06481 763 aa27.8■■■□□ 2.04
PDLIM3-201ENST00000284767 MRC2Q9UBG0 1479 aa27.76■■■□□ 2.03
PDLIM3-201ENST00000284767 ABCA5Q8WWZ7 1642 aa27.75■■■□□ 2.03
PDLIM3-201ENST00000284767 GAPVD1Q14C86 1478 aa27.75■■■□□ 2.03
PDLIM3-201ENST00000284767 TARBP1Q13395 1621 aaKnown RBP27.73■■■□□ 2.03
PDLIM3-201ENST00000284767 CCER1Q8TC90 406 aaPredicted RBP27.71■■■□□ 2.03
PDLIM3-201ENST00000284767 CUL7Q14999 1698 aa27.7■■■□□ 2.03
PDLIM3-201ENST00000284767 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.68■■■□□ 2.02
PDLIM3-201ENST00000284767 P3H3Q8IVL6 736 aa27.68■■■□□ 2.02
PDLIM3-201ENST00000284767 KANK4Q5T7N3 995 aaPredicted RBP27.66■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms