RNA–Protein interactions for RNA: ENST00000321728.11

PRKCB-202, Transcript of protein kinase C beta, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PRKCB, Length 2,689 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKCB-202ENST00000321728 NISCHQ9Y2I1 1504 aa34.93■■■■□ 3.18
PRKCB-202ENST00000321728 SHROOM4Q9ULL8 1493 aa30.75■■■□□ 2.51
PRKCB-202ENST00000321728 SUPT5HO00267 1087 aaKnown RBP30.28■■■□□ 2.44
PRKCB-202ENST00000321728 HRCP23327 699 aa29.99■■■□□ 2.39
PRKCB-202ENST00000321728 MYO15BQ96JP2 1530 aa29.7■■■□□ 2.34
PRKCB-202ENST00000321728 DCAF8L2P0C7V8 631 aa29.67■■■□□ 2.34
PRKCB-202ENST00000321728 CHIC1Q5VXU3 224 aa29.63■■■□□ 2.33
PRKCB-202ENST00000321728 PCGF6Q9BYE7 350 aa29.61■■■□□ 2.33
PRKCB-202ENST00000321728 ZCCHC6Q5VYS8 1495 aaKnown RBP29.56■■■□□ 2.32
PRKCB-202ENST00000321728 PPARGC1BQ86YN6 1023 aaKnown RBP29.38■■■□□ 2.29
PRKCB-202ENST00000321728 CCDC180Q9P1Z9 1646 aa29.27■■■□□ 2.28
PRKCB-202ENST00000321728 DCAF1Q9Y4B6 1507 aa29.01■■■□□ 2.24
PRKCB-202ENST00000321728 LOC105371045A0A1W2PR82 267 aa28.91■■■□□ 2.22
PRKCB-202ENST00000321728 TRIM26Q12899 539 aaPredicted RBP28.75■■■□□ 2.19
PRKCB-202ENST00000321728 ZEB1P37275 1124 aaPredicted RBP28.42■■■□□ 2.14
PRKCB-202ENST00000321728 PELP1Q8IZL8 1130 aaKnown RBP28.4■■■□□ 2.14
PRKCB-202ENST00000321728 SCAF1Q9H7N4 1312 aaKnown RBP28.16■■■□□ 2.1
PRKCB-202ENST00000321728 EHMT2Q96KQ7 1210 aa28.14■■■□□ 2.09
PRKCB-202ENST00000321728 TRIM41Q8WV44 630 aa28.06■■■□□ 2.08
PRKCB-202ENST00000321728 FAM9AQ8IZU1 332 aaPredicted RBP28.06■■■□□ 2.08
PRKCB-202ENST00000321728 SCRIBQ14160 1630 aa28.06■■■□□ 2.08
PRKCB-202ENST00000321728 ABCC9O60706 1549 aa27.99■■■□□ 2.07
PRKCB-202ENST00000321728 RSF1Q96T23 1441 aaPredicted RBP27.89■■■□□ 2.05
PRKCB-202ENST00000321728 RB1CC1Q8TDY2 1594 aa27.77■■■□□ 2.04
PRKCB-202ENST00000321728 ACIN1Q9UKV3 1341 aaKnown RBP27.61■■■□□ 2.01
PRKCB-202ENST00000321728 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.57■■■□□ 2
PRKCB-202ENST00000321728 CCER1Q8TC90 406 aaPredicted RBP27.54■■■□□ 2
PRKCB-202ENST00000321728 NEUROD1Q13562 356 aa27.54■■■□□ 2
PRKCB-202ENST00000321728 CECR2Q9BXF3 1484 aa27.52■■■□□ 2
PRKCB-202ENST00000321728 DIEXFQ68CQ4 756 aaKnown RBP27.38■■□□□ 1.97
PRKCB-202ENST00000321728 GTF3C3Q9Y5Q9 886 aa27.38■■□□□ 1.97
PRKCB-202ENST00000321728 CENPBP07199 599 aaPredicted RBP27.37■■□□□ 1.97
PRKCB-202ENST00000321728 MROH2BQ7Z745 1585 aa27.36■■□□□ 1.97
PRKCB-202ENST00000321728 WIZO95785 1651 aa27.27■■□□□ 1.96
PRKCB-202ENST00000321728 TTBK1Q5TCY1 1321 aaPredicted RBP27.25■■□□□ 1.95
PRKCB-202ENST00000321728 MYT1Q01538 1121 aa27.19■■□□□ 1.94
PRKCB-202ENST00000321728 NACADO15069 1562 aa27.08■■□□□ 1.93
PRKCB-202ENST00000321728 ZNF316A6NFI3 1004 aaPredicted RBP26.93■■□□□ 1.9
PRKCB-202ENST00000321728 WRNQ14191 1432 aaPredicted RBP eCLIP26.92■■□□□ 1.95e-6■■■■■ 29.2
PRKCB-202ENST00000321728 YTHDC1Q96MU7 727 aaKnown RBP26.91■■□□□ 1.9
PRKCB-202ENST00000321728 ABCC8Q09428 1581 aa26.91■■□□□ 1.9
PRKCB-202ENST00000321728 CEP162Q5TB80 1403 aa26.86■■□□□ 1.89
PRKCB-202ENST00000321728 BAZ1AQ9NRL2 1556 aaPredicted RBP26.86■■□□□ 1.89
PRKCB-202ENST00000321728 EIF4G1Q04637 1599 aaKnown RBP26.83■■□□□ 1.89
PRKCB-202ENST00000321728 CCDC88BA6NC98 1476 aa26.79■■□□□ 1.88
PRKCB-202ENST00000321728 TNIKQ9UKE5 1360 aa26.71■■□□□ 1.87
PRKCB-202ENST00000321728 SOGA1O94964 1423 aa26.69■■□□□ 1.86
PRKCB-202ENST00000321728 MIER1Q8N108 512 aa26.69■■□□□ 1.86
PRKCB-202ENST00000321728 UBTFP17480 764 aaKnown RBP26.68■■□□□ 1.86
PRKCB-202ENST00000321728 RUSC2Q8N2Y8 1516 aa26.6■■□□□ 1.85
PRKCB-202ENST00000321728 PABPN1Q86U42 306 aaKnown RBP eCLIP26.6■■□□□ 1.85
PRKCB-202ENST00000321728 TOP2AP11388 1531 aaKnown RBP26.59■■□□□ 1.85
PRKCB-202ENST00000321728 CSRNP3Q8WYN3 585 aa26.59■■□□□ 1.85
PRKCB-202ENST00000321728 SMARCA4P51532 1647 aa26.56■■□□□ 1.84
PRKCB-202ENST00000321728 HNRNPUL2Q1KMD3 747 aaKnown RBP26.56■■□□□ 1.84
PRKCB-202ENST00000321728 SMARCA2P51531 1590 aa26.55■■□□□ 1.84
PRKCB-202ENST00000321728 EEA1Q15075 1411 aa26.5■■□□□ 1.83
PRKCB-202ENST00000321728 RANGAP1P46060 587 aaPredicted RBP26.44■■□□□ 1.82
PRKCB-202ENST00000321728 GOLGA3Q08378 1498 aa26.43■■□□□ 1.82
PRKCB-202ENST00000321728 UNC13AQ9UPW8 1703 aa26.43■■□□□ 1.82
PRKCB-202ENST00000321728 APLP2Q06481 763 aa26.25■■□□□ 1.79
PRKCB-202ENST00000321728 CLIP1P30622 1438 aa26.22■■□□□ 1.79
PRKCB-202ENST00000321728 CEP164Q9UPV0 1460 aa26.19■■□□□ 1.78
PRKCB-202ENST00000321728 VPS8Q8N3P4 1428 aa26.15■■□□□ 1.78
PRKCB-202ENST00000321728 SUPT16HQ9Y5B9 1047 aaKnown RBP26.14■■□□□ 1.77
PRKCB-202ENST00000321728 CLSPNQ9HAW4 1339 aa26.13■■□□□ 1.77
PRKCB-202ENST00000321728 SYNJ1O43426 1573 aa26.11■■□□□ 1.77
PRKCB-202ENST00000321728 KIF21BO75037 1637 aa26.09■■□□□ 1.77
PRKCB-202ENST00000321728 BICRAQ9NZM4 1560 aa26.06■■□□□ 1.76
PRKCB-202ENST00000321728 DHX57Q6P158 1386 aaKnown RBP25.97■■□□□ 1.75
PRKCB-202ENST00000321728 RAPGEF2Q9Y4G8 1499 aa25.96■■□□□ 1.75
PRKCB-202ENST00000321728 BAZ1BQ9UIG0 1483 aaKnown RBP25.95■■□□□ 1.74
PRKCB-202ENST00000321728 TSHZ2Q9NRE2 1034 aa25.91■■□□□ 1.74
PRKCB-202ENST00000321728 ATAD2BQ9ULI0 1458 aa25.85■■□□□ 1.73
PRKCB-202ENST00000321728 ANP32EQ9BTT0 268 aa25.81■■□□□ 1.72
PRKCB-202ENST00000321728 PEG3Q9GZU2 1588 aa25.77■■□□□ 1.72
PRKCB-202ENST00000321728 KANK4Q5T7N3 995 aaPredicted RBP25.74■■□□□ 1.71
PRKCB-202ENST00000321728 KCNH8Q96L42 1107 aa25.7■■□□□ 1.7
PRKCB-202ENST00000321728 BCANQ96GW7 911 aa25.67■■□□□ 1.7
PRKCB-202ENST00000321728 ITGAEP38570 1179 aa25.66■■□□□ 1.7
PRKCB-202ENST00000321728 ARAP1Q96P48 1450 aa25.64■■□□□ 1.69
PRKCB-202ENST00000321728 RRBP1Q9P2E9 1410 aaKnown RBP25.61■■□□□ 1.69
PRKCB-202ENST00000321728 FKBP8Q14318 412 aa25.57■■□□□ 1.68
PRKCB-202ENST00000321728 TOP2BQ02880 1626 aa25.56■■□□□ 1.68
PRKCB-202ENST00000321728 CCNB3Q8WWL7 1395 aa25.55■■□□□ 1.68
PRKCB-202ENST00000321728 ERICH3Q5RHP9 1530 aa25.54■■□□□ 1.68
PRKCB-202ENST00000321728 CUX2O14529 1486 aa25.53■■□□□ 1.68
PRKCB-202ENST00000321728 PRXQ9BXM0 1461 aa25.51■■□□□ 1.67
PRKCB-202ENST00000321728 DDX10Q13206 875 aaKnown RBP25.47■■□□□ 1.67
PRKCB-202ENST00000321728 BCL11AQ9H165 835 aa25.46■■□□□ 1.67
PRKCB-202ENST00000321728 RAB3GAP2Q9H2M9 1393 aa25.44■■□□□ 1.66
PRKCB-202ENST00000321728 NEFLP07196 543 aa25.42■■□□□ 1.66
PRKCB-202ENST00000321728 CUX1P39880 1505 aa25.41■■□□□ 1.66
PRKCB-202ENST00000321728 BIVM-ERCC5R4GMW8 1640 aa25.39■■□□□ 1.66
PRKCB-202ENST00000321728 MAPKBP1O60336 1514 aa25.39■■□□□ 1.65
PRKCB-202ENST00000321728 RBM19Q9Y4C8 960 aaKnown RBP25.36■■□□□ 1.65
PRKCB-202ENST00000321728 SIN3AQ96ST3 1273 aa25.31■■□□□ 1.64
PRKCB-202ENST00000321728 ARHGAP35Q9NRY4 1499 aa25.31■■□□□ 1.64
PRKCB-202ENST00000321728 WDR97A6NE52 1622 aa25.31■■□□□ 1.64
PRKCB-202ENST00000321728 KIF27Q86VH2 1401 aa25.31■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms