RNA–Protein interactions for RNA: ENST00000393551.5

PDLIM7-205, Transcript of PDZ and LIM domain 7, humanhuman

TSL 1 (best) BASIC

Gene PDLIM7, Length 1,226 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM7-205ENST00000393551 NISCHQ9Y2I1 1504 aa45.65■■■■■ 4.9
PDLIM7-205ENST00000393551 CCDC180Q9P1Z9 1646 aa40.84■■■■■ 4.13
PDLIM7-205ENST00000393551 ABCC9O60706 1549 aa40.65■■■■■ 4.1
PDLIM7-205ENST00000393551 RB1CC1Q8TDY2 1594 aa38.74■■■■□ 3.79
PDLIM7-205ENST00000393551 NACADO15069 1562 aa38.55■■■■□ 3.76
PDLIM7-205ENST00000393551 DCAF8L2P0C7V8 631 aa38.37■■■■□ 3.73
PDLIM7-205ENST00000393551 MYO15BQ96JP2 1530 aa38.1■■■■□ 3.69
PDLIM7-205ENST00000393551 DNAJC5BQ9UF47 199 aa38.04■■■■□ 3.68
PDLIM7-205ENST00000393551 UNC13AQ9UPW8 1703 aa38■■■■□ 3.67
PDLIM7-205ENST00000393551 PABPN1Q86U42 306 aaKnown RBP eCLIP37.89■■■■□ 3.664e-7■■■■□ 26.7
PDLIM7-205ENST00000393551 ZCCHC6Q5VYS8 1495 aaKnown RBP37.89■■■■□ 3.66
PDLIM7-205ENST00000393551 BICRAQ9NZM4 1560 aa37.72■■■■□ 3.63
PDLIM7-205ENST00000393551 DCAF1Q9Y4B6 1507 aa37.71■■■■□ 3.63
PDLIM7-205ENST00000393551 SCRIBQ14160 1630 aa37.25■■■■□ 3.55
PDLIM7-205ENST00000393551 SHROOM4Q9ULL8 1493 aa37.1■■■■□ 3.53
PDLIM7-205ENST00000393551 CC2D2AQ9P2K1 1620 aa36.75■■■■□ 3.47
PDLIM7-205ENST00000393551 EIF4G1Q04637 1599 aaKnown RBP36.72■■■■□ 3.47
PDLIM7-205ENST00000393551 CECR2Q9BXF3 1484 aa36.57■■■■□ 3.45
PDLIM7-205ENST00000393551 NCAPD3P42695 1498 aa35.62■■■■□ 3.29
PDLIM7-205ENST00000393551 SMARCA4P51532 1647 aa35.57■■■■□ 3.28
PDLIM7-205ENST00000393551 ATAD2BQ9ULI0 1458 aa35.54■■■■□ 3.28
PDLIM7-205ENST00000393551 SMARCA2P51531 1590 aa35.41■■■■□ 3.26
PDLIM7-205ENST00000393551 BAZ1AQ9NRL2 1556 aaPredicted RBP35.38■■■■□ 3.25
PDLIM7-205ENST00000393551 HMGXB3Q12766 1538 aa35.35■■■■□ 3.25
PDLIM7-205ENST00000393551 PEG3Q9GZU2 1588 aa35.23■■■■□ 3.23
PDLIM7-205ENST00000393551 MROH2BQ7Z745 1585 aa35.21■■■■□ 3.23
PDLIM7-205ENST00000393551 BAZ1BQ9UIG0 1483 aaKnown RBP35.16■■■■□ 3.22
PDLIM7-205ENST00000393551 NESP48681 1621 aa35.03■■■■□ 3.2
PDLIM7-205ENST00000393551 ERCC6Q03468 1493 aa35.01■■■■□ 3.19
PDLIM7-205ENST00000393551 CUX2O14529 1486 aa34.9■■■■□ 3.18
PDLIM7-205ENST00000393551 WIZO95785 1651 aa34.8■■■■□ 3.16
PDLIM7-205ENST00000393551 LAMC3Q9Y6N6 1575 aa34.74■■■■□ 3.15
PDLIM7-205ENST00000393551 DNAJC5Q9H3Z4 198 aa34.67■■■■□ 3.14
PDLIM7-205ENST00000393551 THOC2Q8NI27 1593 aaKnown RBP34.62■■■■□ 3.13
PDLIM7-205ENST00000393551 KIF21AQ7Z4S6 1674 aa34.57■■■■□ 3.13
PDLIM7-205ENST00000393551 RSF1Q96T23 1441 aaPredicted RBP34.55■■■■□ 3.12
PDLIM7-205ENST00000393551 CADPSQ9ULU8 1353 aa34.52■■■■□ 3.12
PDLIM7-205ENST00000393551 PDS5BQ9NTI5 1447 aa34.51■■■■□ 3.12
PDLIM7-205ENST00000393551 TOP2AP11388 1531 aaKnown RBP34.32■■■■□ 3.08
PDLIM7-205ENST00000393551 MRC2Q9UBG0 1479 aa34.23■■■■□ 3.07
PDLIM7-205ENST00000393551 CFTRP13569 1480 aa34.2■■■■□ 3.07
PDLIM7-205ENST00000393551 WDR62O43379 1518 aa34.17■■■■□ 3.06
PDLIM7-205ENST00000393551 FANCD2Q9BXW9 1451 aa34.13■■■■□ 3.05
PDLIM7-205ENST00000393551 CEP164Q9UPV0 1460 aa34.13■■■■□ 3.05
PDLIM7-205ENST00000393551 CCDC88BA6NC98 1476 aa33.97■■■■□ 3.03
PDLIM7-205ENST00000393551 URB2Q14146 1524 aaKnown RBP33.89■■■■□ 3.02
PDLIM7-205ENST00000393551 PRDM2Q13029 1718 aa33.88■■■■□ 3.01
PDLIM7-205ENST00000393551 TOPBP1Q92547 1522 aa33.53■■■□□ 2.96
PDLIM7-205ENST00000393551 IFT140Q96RY7 1462 aa33.44■■■□□ 2.94
PDLIM7-205ENST00000393551 ZNF608Q9ULD9 1512 aaPredicted RBP33.43■■■□□ 2.94
PDLIM7-205ENST00000393551 ABCC8Q09428 1581 aa33.4■■■□□ 2.94
PDLIM7-205ENST00000393551 DNMBPQ6XZF7 1577 aa33.4■■■□□ 2.94
PDLIM7-205ENST00000393551 OSCARQ8IYS5 282 aa33.34■■■□□ 2.93
PDLIM7-205ENST00000393551 TARBP1Q13395 1621 aaKnown RBP33.25■■■□□ 2.91
PDLIM7-205ENST00000393551 EIF4G3O43432 1585 aaKnown RBP33.23■■■□□ 2.91
PDLIM7-205ENST00000393551 POLA1P09884 1462 aaPredicted RBP33.21■■■□□ 2.91
PDLIM7-205ENST00000393551 TRIM41Q8WV44 630 aa33.2■■■□□ 2.91
PDLIM7-205ENST00000393551 AQRO60306 1485 aaKnown RBP eCLIP33.14■■■□□ 2.96e-8■■■■■ 28.4
PDLIM7-205ENST00000393551 SUPT5HO00267 1087 aaKnown RBP33.13■■■□□ 2.89
PDLIM7-205ENST00000393551 RAD54L2Q9Y4B4 1467 aa33.1■■■□□ 2.89
PDLIM7-205ENST00000393551 CUX1P39880 1505 aa33.06■■■□□ 2.88
PDLIM7-205ENST00000393551 SOGA1O94964 1423 aa33.02■■■□□ 2.88
PDLIM7-205ENST00000393551 FGD5Q6ZNL6 1462 aa33.02■■■□□ 2.88
PDLIM7-205ENST00000393551 CHD1O14646 1710 aa32.96■■■□□ 2.87
PDLIM7-205ENST00000393551 TDRD9Q8NDG6 1382 aaKnown RBP32.96■■■□□ 2.87
PDLIM7-205ENST00000393551 RIMBP3CA6NJZ7 1639 aa32.94■■■□□ 2.86
PDLIM7-205ENST00000393551 RIMBP3BA6NNM3 1639 aa32.94■■■□□ 2.86
PDLIM7-205ENST00000393551 RIMBP3Q9UFD9 1639 aa32.94■■■□□ 2.86
PDLIM7-205ENST00000393551 ARHGEF11O15085 1522 aa32.85■■■□□ 2.85
PDLIM7-205ENST00000393551 WDR97A6NE52 1622 aa32.84■■■□□ 2.85
PDLIM7-205ENST00000393551 FBLN2P98095 1184 aa32.8■■■□□ 2.84
PDLIM7-205ENST00000393551 SNAPC4Q5SXM2 1469 aa32.78■■■□□ 2.84
PDLIM7-205ENST00000393551 GRIN2BQ13224 1484 aa32.7■■■□□ 2.83
PDLIM7-205ENST00000393551 MAGI1Q96QZ7 1491 aaPredicted RBP32.67■■■□□ 2.82
PDLIM7-205ENST00000393551 ABCA10Q8WWZ4 1543 aa32.66■■■□□ 2.82
PDLIM7-205ENST00000393551 PBRM1Q86U86 1689 aa32.63■■■□□ 2.81
PDLIM7-205ENST00000393551 GAPVD1Q14C86 1478 aa32.63■■■□□ 2.81
PDLIM7-205ENST00000393551 ABCA5Q8WWZ7 1642 aa32.61■■■□□ 2.81
PDLIM7-205ENST00000393551 CHMP7Q8WUX9 453 aaPredicted RBP32.59■■■□□ 2.81
PDLIM7-205ENST00000393551 CLASP1Q7Z460 1538 aa32.59■■■□□ 2.81
PDLIM7-205ENST00000393551 SYNJ2O15056 1496 aa32.58■■■□□ 2.81
PDLIM7-205ENST00000393551 CYB5RLQ6IPT4 315 aa32.57■■■□□ 2.8
PDLIM7-205ENST00000393551 BIVM-ERCC5R4GMW8 1640 aa32.57■■■□□ 2.8
PDLIM7-205ENST00000393551 TOP2BQ02880 1626 aa32.56■■■□□ 2.8
PDLIM7-205ENST00000393551 SYNJ1O43426 1573 aa32.56■■■□□ 2.8
PDLIM7-205ENST00000393551 ARAP1Q96P48 1450 aa32.55■■■□□ 2.8
PDLIM7-205ENST00000393551 WRNQ14191 1432 aaPredicted RBP eCLIP32.54■■■□□ 2.8
PDLIM7-205ENST00000393551 ADAMTS12P58397 1594 aa32.33■■■□□ 2.77
PDLIM7-205ENST00000393551 GRIN2AQ12879 1464 aa32.31■■■□□ 2.76
PDLIM7-205ENST00000393551 ERICH3Q5RHP9 1530 aa32.23■■■□□ 2.75
PDLIM7-205ENST00000393551 CEP170Q5SW79 1584 aa32.22■■■□□ 2.75
PDLIM7-205ENST00000393551 FHAD1B1AJZ9 1412 aa32.21■■■□□ 2.75
PDLIM7-205ENST00000393551 NUP160Q12769 1436 aa32.21■■■□□ 2.75
PDLIM7-205ENST00000393551 ERCC6L2Q5T890 1561 aa32.14■■■□□ 2.74
PDLIM7-205ENST00000393551 TRHP20396 242 aaPredicted RBP32.08■■■□□ 2.73
PDLIM7-205ENST00000393551 SHROOM2Q13796 1616 aa32.06■■■□□ 2.72
PDLIM7-205ENST00000393551 IGF1RP08069 1367 aa31.92■■■□□ 2.7
PDLIM7-205ENST00000393551 KIF27Q86VH2 1401 aa31.88■■■□□ 2.69
PDLIM7-205ENST00000393551 RUSC2Q8N2Y8 1516 aa31.87■■■□□ 2.69
PDLIM7-205ENST00000393551 PRG4Q92954 1404 aaPredicted RBP31.85■■■□□ 2.69
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms