RNA–Protein interactions for RNA: ENST00000319234.4

SHISA3-201, Transcript of shisa family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHISA3, Length 1,971 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHISA3-201ENST00000319234 NISCHQ9Y2I1 1504 aa40.17■■■■■ 4.02
SHISA3-201ENST00000319234 CCDC180Q9P1Z9 1646 aa34.78■■■■□ 3.16
SHISA3-201ENST00000319234 ZCCHC6Q5VYS8 1495 aaKnown RBP33.81■■■■□ 3
SHISA3-201ENST00000319234 DCAF1Q9Y4B6 1507 aa33.19■■■□□ 2.9
SHISA3-201ENST00000319234 DCAF8L2P0C7V8 631 aa33.14■■■□□ 2.9
SHISA3-201ENST00000319234 SHROOM4Q9ULL8 1493 aa33.1■■■□□ 2.89
SHISA3-201ENST00000319234 MYO15BQ96JP2 1530 aa32.65■■■□□ 2.82
SHISA3-201ENST00000319234 ABCC9O60706 1549 aa32.63■■■□□ 2.81
SHISA3-201ENST00000319234 NACADO15069 1562 aa32.34■■■□□ 2.77
SHISA3-201ENST00000319234 SCRIBQ14160 1630 aa32.09■■■□□ 2.73
SHISA3-201ENST00000319234 SUPT5HO00267 1087 aaKnown RBP32.06■■■□□ 2.72
SHISA3-201ENST00000319234 RB1CC1Q8TDY2 1594 aa31.97■■■□□ 2.71
SHISA3-201ENST00000319234 RSF1Q96T23 1441 aaPredicted RBP31.34■■■□□ 2.61
SHISA3-201ENST00000319234 UNC13AQ9UPW8 1703 aa31.31■■■□□ 2.6
SHISA3-201ENST00000319234 CECR2Q9BXF3 1484 aa31.21■■■□□ 2.59
SHISA3-201ENST00000319234 MROH2BQ7Z745 1585 aa31.06■■■□□ 2.56
SHISA3-201ENST00000319234 BICRAQ9NZM4 1560 aa31.02■■■□□ 2.56
SHISA3-201ENST00000319234 BAZ1AQ9NRL2 1556 aaPredicted RBP30.97■■■□□ 2.55
SHISA3-201ENST00000319234 PABPN1Q86U42 306 aaKnown RBP eCLIP30.9■■■□□ 2.54
SHISA3-201ENST00000319234 CHIC1Q5VXU3 224 aa30.89■■■□□ 2.54
SHISA3-201ENST00000319234 WIZO95785 1651 aa30.81■■■□□ 2.52
SHISA3-201ENST00000319234 SMARCA4P51532 1647 aa30.78■■■□□ 2.52
SHISA3-201ENST00000319234 TOP2AP11388 1531 aaKnown RBP30.5■■■□□ 2.47
SHISA3-201ENST00000319234 PEG3Q9GZU2 1588 aa30.38■■■□□ 2.45
SHISA3-201ENST00000319234 CCDC88BA6NC98 1476 aa30.23■■■□□ 2.43
SHISA3-201ENST00000319234 SMARCA2P51531 1590 aa30.23■■■□□ 2.43
SHISA3-201ENST00000319234 ATAD2BQ9ULI0 1458 aa30.21■■■□□ 2.43
SHISA3-201ENST00000319234 EIF4G1Q04637 1599 aaKnown RBP30.12■■■□□ 2.41
SHISA3-201ENST00000319234 TRIM41Q8WV44 630 aa30.11■■■□□ 2.41
SHISA3-201ENST00000319234 BAZ1BQ9UIG0 1483 aaKnown RBP30.05■■■□□ 2.4
SHISA3-201ENST00000319234 NCAPD3P42695 1498 aa29.88■■■□□ 2.37
SHISA3-201ENST00000319234 HMGXB3Q12766 1538 aa29.83■■■□□ 2.37
SHISA3-201ENST00000319234 LOC105371045A0A1W2PR82 267 aa29.75■■■□□ 2.35
SHISA3-201ENST00000319234 ABCC8Q09428 1581 aa29.7■■■□□ 2.34
SHISA3-201ENST00000319234 FAM9AQ8IZU1 332 aaPredicted RBP29.59■■■□□ 2.33
SHISA3-201ENST00000319234 CC2D2AQ9P2K1 1620 aa29.51■■■□□ 2.31
SHISA3-201ENST00000319234 WRNQ14191 1432 aaPredicted RBP eCLIP29.48■■■□□ 2.31
SHISA3-201ENST00000319234 HRCP23327 699 aa29.41■■■□□ 2.3
SHISA3-201ENST00000319234 CFTRP13569 1480 aa29.32■■■□□ 2.28
SHISA3-201ENST00000319234 SYNJ1O43426 1573 aa29.32■■■□□ 2.28
SHISA3-201ENST00000319234 SOGA1O94964 1423 aa29.26■■■□□ 2.27
SHISA3-201ENST00000319234 EEA1Q15075 1411 aa29.26■■■□□ 2.27
SHISA3-201ENST00000319234 PCGF6Q9BYE7 350 aa29.25■■■□□ 2.27
SHISA3-201ENST00000319234 TOP2BQ02880 1626 aa29.16■■■□□ 2.26
SHISA3-201ENST00000319234 EHMT2Q96KQ7 1210 aa29.16■■■□□ 2.26
SHISA3-201ENST00000319234 CADPSQ9ULU8 1353 aa29.16■■■□□ 2.26
SHISA3-201ENST00000319234 RUSC2Q8N2Y8 1516 aa29.12■■■□□ 2.25
SHISA3-201ENST00000319234 BIVM-ERCC5R4GMW8 1640 aa29.11■■■□□ 2.25
SHISA3-201ENST00000319234 CSRNP3Q8WYN3 585 aa29.11■■■□□ 2.25
SHISA3-201ENST00000319234 PRDM2Q13029 1718 aa29.11■■■□□ 2.25
SHISA3-201ENST00000319234 CUX1P39880 1505 aa29.01■■■□□ 2.23
SHISA3-201ENST00000319234 TRIM26Q12899 539 aaPredicted RBP28.94■■■□□ 2.22
SHISA3-201ENST00000319234 TNIKQ9UKE5 1360 aa28.88■■■□□ 2.21
SHISA3-201ENST00000319234 GOLGA3Q08378 1498 aa28.87■■■□□ 2.21
SHISA3-201ENST00000319234 CEP164Q9UPV0 1460 aa28.83■■■□□ 2.21
SHISA3-201ENST00000319234 KIF21BO75037 1637 aa28.83■■■□□ 2.21
SHISA3-201ENST00000319234 FANCD2Q9BXW9 1451 aa28.82■■■□□ 2.2
SHISA3-201ENST00000319234 DNAJC5BQ9UF47 199 aa28.79■■■□□ 2.2
SHISA3-201ENST00000319234 UBTFP17480 764 aaKnown RBP28.77■■■□□ 2.2
SHISA3-201ENST00000319234 NESP48681 1621 aa28.77■■■□□ 2.2
SHISA3-201ENST00000319234 LAMC3Q9Y6N6 1575 aa28.76■■■□□ 2.2
SHISA3-201ENST00000319234 CEP162Q5TB80 1403 aa28.74■■■□□ 2.19
SHISA3-201ENST00000319234 KIF27Q86VH2 1401 aa28.7■■■□□ 2.19
SHISA3-201ENST00000319234 FGD5Q6ZNL6 1462 aa28.64■■■□□ 2.18
SHISA3-201ENST00000319234 RAPGEF2Q9Y4G8 1499 aa28.63■■■□□ 2.17
SHISA3-201ENST00000319234 DNMBPQ6XZF7 1577 aa28.61■■■□□ 2.17
SHISA3-201ENST00000319234 PRXQ9BXM0 1461 aa28.6■■■□□ 2.17
SHISA3-201ENST00000319234 PDS5BQ9NTI5 1447 aa28.57■■■□□ 2.16
SHISA3-201ENST00000319234 ERICH3Q5RHP9 1530 aa28.57■■■□□ 2.16
SHISA3-201ENST00000319234 TOPBP1Q92547 1522 aa28.55■■■□□ 2.16
SHISA3-201ENST00000319234 CUX2O14529 1486 aa28.54■■■□□ 2.16
SHISA3-201ENST00000319234 PPARGC1BQ86YN6 1023 aaKnown RBP28.5■■■□□ 2.15
SHISA3-201ENST00000319234 URB2Q14146 1524 aaKnown RBP28.44■■■□□ 2.14
SHISA3-201ENST00000319234 POLA1P09884 1462 aaPredicted RBP28.44■■■□□ 2.14
SHISA3-201ENST00000319234 CLIP1P30622 1438 aa28.44■■■□□ 2.14
SHISA3-201ENST00000319234 IGF1RP08069 1367 aa28.43■■■□□ 2.14
SHISA3-201ENST00000319234 ZEB1P37275 1124 aaPredicted RBP28.43■■■□□ 2.14
SHISA3-201ENST00000319234 ABCA10Q8WWZ4 1543 aa28.39■■■□□ 2.14
SHISA3-201ENST00000319234 RAD54L2Q9Y4B4 1467 aa28.38■■■□□ 2.13
SHISA3-201ENST00000319234 KIF21AQ7Z4S6 1674 aa28.37■■■□□ 2.13
SHISA3-201ENST00000319234 CARMIL1Q5VZK9 1371 aa28.29■■■□□ 2.12
SHISA3-201ENST00000319234 VPS8Q8N3P4 1428 aa28.23■■■□□ 2.11
SHISA3-201ENST00000319234 WDR97A6NE52 1622 aa28.21■■■□□ 2.11
SHISA3-201ENST00000319234 RANGAP1P46060 587 aaPredicted RBP28.2■■■□□ 2.1
SHISA3-201ENST00000319234 MRC2Q9UBG0 1479 aa28.17■■■□□ 2.1
SHISA3-201ENST00000319234 CUL7Q14999 1698 aa28.1■■■□□ 2.09
SHISA3-201ENST00000319234 ARAP1Q96P48 1450 aa28.1■■■□□ 2.09
SHISA3-201ENST00000319234 ABCA5Q8WWZ7 1642 aa28.1■■■□□ 2.09
SHISA3-201ENST00000319234 TDRD9Q8NDG6 1382 aaKnown RBP28.08■■■□□ 2.09
SHISA3-201ENST00000319234 TARBP1Q13395 1621 aaKnown RBP28.07■■■□□ 2.08
SHISA3-201ENST00000319234 GAPVD1Q14C86 1478 aa28.06■■■□□ 2.08
SHISA3-201ENST00000319234 ARHGAP35Q9NRY4 1499 aa28.02■■■□□ 2.08
SHISA3-201ENST00000319234 APLP2Q06481 763 aa28■■■□□ 2.07
SHISA3-201ENST00000319234 TTBK1Q5TCY1 1321 aaPredicted RBP28■■■□□ 2.07
SHISA3-201ENST00000319234 WDR62O43379 1518 aa27.99■■■□□ 2.07
SHISA3-201ENST00000319234 ERCC6Q03468 1493 aa27.93■■■□□ 2.06
SHISA3-201ENST00000319234 IFT140Q96RY7 1462 aa27.9■■■□□ 2.06
SHISA3-201ENST00000319234 AQRO60306 1485 aaKnown RBP eCLIP27.83■■■□□ 2.05
SHISA3-201ENST00000319234 CTTNBP2Q8WZ74 1663 aa27.83■■■□□ 2.05
SHISA3-201ENST00000319234 PBRM1Q86U86 1689 aa27.81■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms