Protein–RNA interactions for Protein: Q7Z3D4

LYSMD3, LysM and putative peptidoglycan-binding domain-containing protein 3, humanhuman

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD3Q7Z3D4 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC34.28■■■■□ 3.08
LYSMD3Q7Z3D4 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC33.81■■■■□ 3
LYSMD3Q7Z3D4 AL356512.1-201ENST00000607453 1739 ntBASIC33.39■■■□□ 2.94
LYSMD3Q7Z3D4 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC33.35■■■□□ 2.93
LYSMD3Q7Z3D4 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC33.19■■■□□ 2.9
LYSMD3Q7Z3D4 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC33.15■■■□□ 2.9
LYSMD3Q7Z3D4 HES6-203ENST00000409160 1600 ntTSL 2 BASIC32.86■■■□□ 2.85
LYSMD3Q7Z3D4 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC32.85■■■□□ 2.85
LYSMD3Q7Z3D4 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC32.59■■■□□ 2.81
LYSMD3Q7Z3D4 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC32.48■■■□□ 2.79
LYSMD3Q7Z3D4 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC32.39■■■□□ 2.78
LYSMD3Q7Z3D4 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC32.3■■■□□ 2.76
LYSMD3Q7Z3D4 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC32.21■■■□□ 2.75
LYSMD3Q7Z3D4 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC32.05■■■□□ 2.72
LYSMD3Q7Z3D4 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
LYSMD3Q7Z3D4 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC31.77■■■□□ 2.68
LYSMD3Q7Z3D4 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC31.62■■■□□ 2.65
LYSMD3Q7Z3D4 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC31.59■■■□□ 2.65
LYSMD3Q7Z3D4 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC31.58■■■□□ 2.65
LYSMD3Q7Z3D4 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC31.53■■■□□ 2.64
LYSMD3Q7Z3D4 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC31.43■■■□□ 2.62
LYSMD3Q7Z3D4 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC31.37■■■□□ 2.61
LYSMD3Q7Z3D4 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC31.36■■■□□ 2.61
LYSMD3Q7Z3D4 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC31.13■■■□□ 2.57
LYSMD3Q7Z3D4 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC31.07■■■□□ 2.56
LYSMD3Q7Z3D4 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
LYSMD3Q7Z3D4 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
LYSMD3Q7Z3D4 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC30.98■■■□□ 2.55
LYSMD3Q7Z3D4 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC30.85■■■□□ 2.53
LYSMD3Q7Z3D4 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
LYSMD3Q7Z3D4 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
LYSMD3Q7Z3D4 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC30.64■■■□□ 2.5
LYSMD3Q7Z3D4 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
LYSMD3Q7Z3D4 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC30.64■■■□□ 2.5
LYSMD3Q7Z3D4 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
LYSMD3Q7Z3D4 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
LYSMD3Q7Z3D4 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC30.63■■■□□ 2.49
LYSMD3Q7Z3D4 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC30.62■■■□□ 2.49
LYSMD3Q7Z3D4 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
LYSMD3Q7Z3D4 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC30.61■■■□□ 2.49
LYSMD3Q7Z3D4 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
LYSMD3Q7Z3D4 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
LYSMD3Q7Z3D4 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC30.49■■■□□ 2.47
LYSMD3Q7Z3D4 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC30.46■■■□□ 2.47
LYSMD3Q7Z3D4 INO80B-203ENST00000409917 796 ntTSL 2 BASIC30.4■■■□□ 2.46
LYSMD3Q7Z3D4 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
LYSMD3Q7Z3D4 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
LYSMD3Q7Z3D4 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC30.26■■■□□ 2.43
LYSMD3Q7Z3D4 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC30.22■■■□□ 2.43
LYSMD3Q7Z3D4 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.42
LYSMD3Q7Z3D4 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC30.15■■■□□ 2.42
LYSMD3Q7Z3D4 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC30.12■■■□□ 2.41
LYSMD3Q7Z3D4 AC015813.7-201ENST00000623294 581 ntBASIC30.04■■■□□ 2.4
LYSMD3Q7Z3D4 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC29.93■■■□□ 2.38
LYSMD3Q7Z3D4 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC29.92■■■□□ 2.38
LYSMD3Q7Z3D4 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
LYSMD3Q7Z3D4 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC29.89■■■□□ 2.38
LYSMD3Q7Z3D4 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC29.88■■■□□ 2.37
LYSMD3Q7Z3D4 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
LYSMD3Q7Z3D4 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC29.79■■■□□ 2.36
LYSMD3Q7Z3D4 ILK-212ENST00000532063 1617 ntTSL 2 BASIC29.78■■■□□ 2.36
LYSMD3Q7Z3D4 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC29.77■■■□□ 2.36
LYSMD3Q7Z3D4 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC29.73■■■□□ 2.35
LYSMD3Q7Z3D4 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC29.73■■■□□ 2.35
LYSMD3Q7Z3D4 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
LYSMD3Q7Z3D4 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
LYSMD3Q7Z3D4 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
LYSMD3Q7Z3D4 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC29.61■■■□□ 2.33
LYSMD3Q7Z3D4 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
LYSMD3Q7Z3D4 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC29.58■■■□□ 2.33
LYSMD3Q7Z3D4 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC29.58■■■□□ 2.33
LYSMD3Q7Z3D4 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC29.57■■■□□ 2.32
LYSMD3Q7Z3D4 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
LYSMD3Q7Z3D4 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
LYSMD3Q7Z3D4 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC29.54■■■□□ 2.32
LYSMD3Q7Z3D4 AC006077.2-201ENST00000623591 457 ntBASIC29.54■■■□□ 2.32
LYSMD3Q7Z3D4 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
LYSMD3Q7Z3D4 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
LYSMD3Q7Z3D4 ZNRF2P1-201ENST00000441407 443 ntBASIC29.4■■■□□ 2.3
LYSMD3Q7Z3D4 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC29.4■■■□□ 2.3
LYSMD3Q7Z3D4 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
LYSMD3Q7Z3D4 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC29.37■■■□□ 2.29
LYSMD3Q7Z3D4 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC29.36■■■□□ 2.29
LYSMD3Q7Z3D4 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
LYSMD3Q7Z3D4 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC29.27■■■□□ 2.28
LYSMD3Q7Z3D4 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC29.26■■■□□ 2.27
LYSMD3Q7Z3D4 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
LYSMD3Q7Z3D4 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC29.22■■■□□ 2.27
LYSMD3Q7Z3D4 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
LYSMD3Q7Z3D4 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC29.15■■■□□ 2.26
LYSMD3Q7Z3D4 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC29.09■■■□□ 2.25
LYSMD3Q7Z3D4 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC29.09■■■□□ 2.25
LYSMD3Q7Z3D4 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC29.08■■■□□ 2.25
LYSMD3Q7Z3D4 AC145285.7-201ENST00000614819 1539 ntBASIC29.06■■■□□ 2.24
LYSMD3Q7Z3D4 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC29.05■■■□□ 2.24
LYSMD3Q7Z3D4 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC29.05■■■□□ 2.24
LYSMD3Q7Z3D4 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC29.04■■■□□ 2.24
LYSMD3Q7Z3D4 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC29.04■■■□□ 2.24
LYSMD3Q7Z3D4 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC29.03■■■□□ 2.24
LYSMD3Q7Z3D4 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC29.03■■■□□ 2.24
Retrieved 100 of 98,524 protein–RNA pairs in 16.8 ms