RNA–Protein interactions for RNA: ENST00000428678.1

UPK3BP1-201, Transcript of uroplakin 3B pseudogene 1, humanhuman

BASIC

Gene UPK3BP1, Length 509 nt, Biotype transcribed unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3BP1-201ENST00000428678 NISCHQ9Y2I1 1504 aa46.28■■■■■ 5
UPK3BP1-201ENST00000428678 ABCC9O60706 1549 aa41.97■■■■■ 4.31
UPK3BP1-201ENST00000428678 CCDC180Q9P1Z9 1646 aa41.65■■■■■ 4.26
UPK3BP1-201ENST00000428678 RB1CC1Q8TDY2 1594 aa39.8■■■■□ 3.96
UPK3BP1-201ENST00000428678 DNAJC5BQ9UF47 199 aa39.59■■■■□ 3.93
UPK3BP1-201ENST00000428678 NACADO15069 1562 aa39.44■■■■□ 3.9
UPK3BP1-201ENST00000428678 DCAF8L2P0C7V8 631 aa39.26■■■■□ 3.88
UPK3BP1-201ENST00000428678 PABPN1Q86U42 306 aaKnown RBP eCLIP39.04■■■■□ 3.84
UPK3BP1-201ENST00000428678 UNC13AQ9UPW8 1703 aa38.9■■■■□ 3.82
UPK3BP1-201ENST00000428678 MYO15BQ96JP2 1530 aa38.77■■■■□ 3.8
UPK3BP1-201ENST00000428678 BICRAQ9NZM4 1560 aa38.63■■■■□ 3.77
UPK3BP1-201ENST00000428678 ZCCHC6Q5VYS8 1495 aaKnown RBP38.29■■■■□ 3.72
UPK3BP1-201ENST00000428678 DCAF1Q9Y4B6 1507 aa38.17■■■■□ 3.7
UPK3BP1-201ENST00000428678 SHROOM4Q9ULL8 1493 aa38.07■■■■□ 3.68
UPK3BP1-201ENST00000428678 SCRIBQ14160 1630 aa37.98■■■■□ 3.67
UPK3BP1-201ENST00000428678 CC2D2AQ9P2K1 1620 aa37.87■■■■□ 3.65
UPK3BP1-201ENST00000428678 CECR2Q9BXF3 1484 aa37.83■■■■□ 3.65
UPK3BP1-201ENST00000428678 EIF4G1Q04637 1599 aaKnown RBP37.72■■■■□ 3.63
UPK3BP1-201ENST00000428678 DNAJC5Q9H3Z4 198 aa36.56■■■■□ 3.44
UPK3BP1-201ENST00000428678 NCAPD3P42695 1498 aa36.4■■■■□ 3.42
UPK3BP1-201ENST00000428678 ERCC6Q03468 1493 aa36.28■■■■□ 3.4
UPK3BP1-201ENST00000428678 ATAD2BQ9ULI0 1458 aa36.27■■■■□ 3.4
UPK3BP1-201ENST00000428678 CUX2O14529 1486 aa36.26■■■■□ 3.4
UPK3BP1-201ENST00000428678 SMARCA4P51532 1647 aa36.18■■■■□ 3.38
UPK3BP1-201ENST00000428678 SMARCA2P51531 1590 aa36.16■■■■□ 3.38
UPK3BP1-201ENST00000428678 HMGXB3Q12766 1538 aa36.12■■■■□ 3.37
UPK3BP1-201ENST00000428678 NESP48681 1621 aa35.97■■■■□ 3.35
UPK3BP1-201ENST00000428678 BAZ1AQ9NRL2 1556 aaPredicted RBP35.95■■■■□ 3.35
UPK3BP1-201ENST00000428678 BAZ1BQ9UIG0 1483 aaKnown RBP35.93■■■■□ 3.34
UPK3BP1-201ENST00000428678 PEG3Q9GZU2 1588 aa35.79■■■■□ 3.32
UPK3BP1-201ENST00000428678 MROH2BQ7Z745 1585 aa35.67■■■■□ 3.3
UPK3BP1-201ENST00000428678 LAMC3Q9Y6N6 1575 aa35.65■■■■□ 3.3
UPK3BP1-201ENST00000428678 THOC2Q8NI27 1593 aaKnown RBP35.64■■■■□ 3.3
UPK3BP1-201ENST00000428678 KIF21AQ7Z4S6 1674 aa35.5■■■■□ 3.27
UPK3BP1-201ENST00000428678 PDS5BQ9NTI5 1447 aa35.47■■■■□ 3.27
UPK3BP1-201ENST00000428678 CADPSQ9ULU8 1353 aa35.3■■■■□ 3.24
UPK3BP1-201ENST00000428678 WIZO95785 1651 aa35.24■■■■□ 3.23
UPK3BP1-201ENST00000428678 MRC2Q9UBG0 1479 aa35.18■■■■□ 3.22
UPK3BP1-201ENST00000428678 WDR62O43379 1518 aa35.08■■■■□ 3.21
UPK3BP1-201ENST00000428678 CEP164Q9UPV0 1460 aa34.99■■■■□ 3.19
UPK3BP1-201ENST00000428678 FANCD2Q9BXW9 1451 aa34.92■■■■□ 3.18
UPK3BP1-201ENST00000428678 TRIM41Q8WV44 630 aa34.91■■■■□ 3.18
UPK3BP1-201ENST00000428678 CFTRP13569 1480 aa34.83■■■■□ 3.17
UPK3BP1-201ENST00000428678 RSF1Q96T23 1441 aaPredicted RBP34.81■■■■□ 3.16
UPK3BP1-201ENST00000428678 TOP2AP11388 1531 aaKnown RBP34.76■■■■□ 3.16
UPK3BP1-201ENST00000428678 URB2Q14146 1524 aaKnown RBP34.65■■■■□ 3.14
UPK3BP1-201ENST00000428678 OSCARQ8IYS5 282 aa34.57■■■■□ 3.12
UPK3BP1-201ENST00000428678 PRDM2Q13029 1718 aa34.49■■■■□ 3.11
UPK3BP1-201ENST00000428678 CCDC88BA6NC98 1476 aa34.37■■■■□ 3.09
UPK3BP1-201ENST00000428678 IFT140Q96RY7 1462 aa34.29■■■■□ 3.08
UPK3BP1-201ENST00000428678 ZNF608Q9ULD9 1512 aaPredicted RBP34.28■■■■□ 3.08
UPK3BP1-201ENST00000428678 TOPBP1Q92547 1522 aa34.22■■■■□ 3.07
UPK3BP1-201ENST00000428678 RIMBP3CA6NJZ7 1639 aa34.16■■■■□ 3.06
UPK3BP1-201ENST00000428678 RIMBP3BA6NNM3 1639 aa34.16■■■■□ 3.06
UPK3BP1-201ENST00000428678 RIMBP3Q9UFD9 1639 aa34.16■■■■□ 3.06
UPK3BP1-201ENST00000428678 ABCC8Q09428 1581 aa34.11■■■■□ 3.05
UPK3BP1-201ENST00000428678 EIF4G3O43432 1585 aaKnown RBP34.08■■■■□ 3.05
UPK3BP1-201ENST00000428678 DNMBPQ6XZF7 1577 aa34.07■■■■□ 3.05
UPK3BP1-201ENST00000428678 ARHGEF11O15085 1522 aa34.02■■■■□ 3.04
UPK3BP1-201ENST00000428678 AQRO60306 1485 aaKnown RBP eCLIP33.93■■■■□ 3.02
UPK3BP1-201ENST00000428678 TARBP1Q13395 1621 aaKnown RBP33.93■■■■□ 3.02
UPK3BP1-201ENST00000428678 CHD1O14646 1710 aa33.89■■■■□ 3.02
UPK3BP1-201ENST00000428678 POLA1P09884 1462 aaPredicted RBP33.86■■■■□ 3.01
UPK3BP1-201ENST00000428678 FBLN2P98095 1184 aa33.81■■■■□ 3
UPK3BP1-201ENST00000428678 CYB5RLQ6IPT4 315 aa33.81■■■■□ 3
UPK3BP1-201ENST00000428678 RAD54L2Q9Y4B4 1467 aa33.75■■■□□ 2.99
UPK3BP1-201ENST00000428678 SOGA1O94964 1423 aa33.7■■■□□ 2.99
UPK3BP1-201ENST00000428678 TDRD9Q8NDG6 1382 aaKnown RBP33.69■■■□□ 2.98
UPK3BP1-201ENST00000428678 ARAP1Q96P48 1450 aa33.67■■■□□ 2.98
UPK3BP1-201ENST00000428678 FGD5Q6ZNL6 1462 aa33.61■■■□□ 2.97
UPK3BP1-201ENST00000428678 SNAPC4Q5SXM2 1469 aa33.58■■■□□ 2.97
UPK3BP1-201ENST00000428678 WDR97A6NE52 1622 aa33.56■■■□□ 2.96
UPK3BP1-201ENST00000428678 TRHP20396 242 aaPredicted RBP33.55■■■□□ 2.96
UPK3BP1-201ENST00000428678 CUX1P39880 1505 aa33.53■■■□□ 2.96
UPK3BP1-201ENST00000428678 CHMP7Q8WUX9 453 aaPredicted RBP33.49■■■□□ 2.95
UPK3BP1-201ENST00000428678 MAGI1Q96QZ7 1491 aaPredicted RBP33.47■■■□□ 2.95
UPK3BP1-201ENST00000428678 CLASP1Q7Z460 1538 aa33.46■■■□□ 2.95
UPK3BP1-201ENST00000428678 GRIN2BQ13224 1484 aa33.44■■■□□ 2.94
UPK3BP1-201ENST00000428678 SYNJ1O43426 1573 aa33.44■■■□□ 2.94
UPK3BP1-201ENST00000428678 SYNJ2O15056 1496 aa33.36■■■□□ 2.93
UPK3BP1-201ENST00000428678 PBRM1Q86U86 1689 aa33.31■■■□□ 2.92
UPK3BP1-201ENST00000428678 GAPVD1Q14C86 1478 aa33.29■■■□□ 2.92
UPK3BP1-201ENST00000428678 ABCA10Q8WWZ4 1543 aa33.19■■■□□ 2.9
UPK3BP1-201ENST00000428678 ABCA5Q8WWZ7 1642 aa33.18■■■□□ 2.9
UPK3BP1-201ENST00000428678 SUPT5HO00267 1087 aaKnown RBP33.13■■■□□ 2.89
UPK3BP1-201ENST00000428678 WRNQ14191 1432 aaPredicted RBP eCLIP33.02■■■□□ 2.88
UPK3BP1-201ENST00000428678 GRIN2AQ12879 1464 aa33.01■■■□□ 2.88
UPK3BP1-201ENST00000428678 ADAMTS12P58397 1594 aa32.96■■■□□ 2.87
UPK3BP1-201ENST00000428678 ERCC6L2Q5T890 1561 aa32.94■■■□□ 2.86
UPK3BP1-201ENST00000428678 TOP2BQ02880 1626 aa32.91■■■□□ 2.86
UPK3BP1-201ENST00000428678 BIVM-ERCC5R4GMW8 1640 aa32.91■■■□□ 2.86
UPK3BP1-201ENST00000428678 CEP170Q5SW79 1584 aa32.91■■■□□ 2.86
UPK3BP1-201ENST00000428678 NUP160Q12769 1436 aa32.89■■■□□ 2.86
UPK3BP1-201ENST00000428678 FHAD1B1AJZ9 1412 aa32.85■■■□□ 2.85
UPK3BP1-201ENST00000428678 AEBP2Q6ZN18 517 aaPredicted RBP32.79■■■□□ 2.84
UPK3BP1-201ENST00000428678 SHROOM2Q13796 1616 aa32.78■■■□□ 2.84
UPK3BP1-201ENST00000428678 ERICH3Q5RHP9 1530 aa32.77■■■□□ 2.84
UPK3BP1-201ENST00000428678 PRG4Q92954 1404 aaPredicted RBP32.63■■■□□ 2.81
UPK3BP1-201ENST00000428678 JPH4Q96JJ6 628 aa32.57■■■□□ 2.8
UPK3BP1-201ENST00000428678 KIF13AQ9H1H9 1805 aa32.51■■■□□ 2.8
Retrieved 100 of 20,778 RNA–protein pairs in 143.9 ms