RNA–Protein interactions for RNA: ENST00000332728.8

LYSMD4-201, Transcript of LysM domain containing 4, humanhuman

TSL 4 BASIC

Gene LYSMD4, Length 2,847 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD4-201ENST00000332728 NISCHQ9Y2I1 1504 aa38.27■■■■□ 3.72
LYSMD4-201ENST00000332728 SHROOM4Q9ULL8 1493 aa33.18■■■□□ 2.9
LYSMD4-201ENST00000332728 DCAF8L2P0C7V8 631 aa32.83■■■□□ 2.85
LYSMD4-201ENST00000332728 CCDC180Q9P1Z9 1646 aa32.35■■■□□ 2.77
LYSMD4-201ENST00000332728 SUPT5HO00267 1087 aaKnown RBP32.33■■■□□ 2.77
LYSMD4-201ENST00000332728 ZCCHC6Q5VYS8 1495 aaKnown RBP32.21■■■□□ 2.75
LYSMD4-201ENST00000332728 ABCC9O60706 1549 aa31.13■■■□□ 2.57
LYSMD4-201ENST00000332728 DCAF1Q9Y4B6 1507 aa30.99■■■□□ 2.55
LYSMD4-201ENST00000332728 SCRIBQ14160 1630 aa30.89■■■□□ 2.54
LYSMD4-201ENST00000332728 CHIC1Q5VXU3 224 aa30.87■■■□□ 2.53
LYSMD4-201ENST00000332728 MYO15BQ96JP2 1530 aa30.67■■■□□ 2.5
LYSMD4-201ENST00000332728 LOC105371045A0A1W2PR82 267 aa30.29■■■□□ 2.44
LYSMD4-201ENST00000332728 RSF1Q96T23 1441 aaPredicted RBP30.28■■■□□ 2.44
LYSMD4-201ENST00000332728 CECR2Q9BXF3 1484 aa30.19■■■□□ 2.42
LYSMD4-201ENST00000332728 NACADO15069 1562 aa30.15■■■□□ 2.42
LYSMD4-201ENST00000332728 EHMT2Q96KQ7 1210 aa30.14■■■□□ 2.42
LYSMD4-201ENST00000332728 FAM9AQ8IZU1 332 aaPredicted RBP30.04■■■□□ 2.4
LYSMD4-201ENST00000332728 RB1CC1Q8TDY2 1594 aa29.97■■■□□ 2.39
LYSMD4-201ENST00000332728 PABPN1Q86U42 306 aaKnown RBP eCLIP29.95■■■□□ 2.38
LYSMD4-201ENST00000332728 MROH2BQ7Z745 1585 aa29.92■■■□□ 2.38
LYSMD4-201ENST00000332728 TRIM41Q8WV44 630 aa29.88■■■□□ 2.37
LYSMD4-201ENST00000332728 PCGF6Q9BYE7 350 aa29.81■■■□□ 2.36
LYSMD4-201ENST00000332728 WIZO95785 1651 aa29.75■■■□□ 2.35
LYSMD4-201ENST00000332728 UNC13AQ9UPW8 1703 aa29.44■■■□□ 2.3
LYSMD4-201ENST00000332728 BAZ1AQ9NRL2 1556 aaPredicted RBP29.35■■■□□ 2.29
LYSMD4-201ENST00000332728 PPARGC1BQ86YN6 1023 aaKnown RBP29.26■■■□□ 2.27
LYSMD4-201ENST00000332728 SMARCA4P51532 1647 aa29.21■■■□□ 2.27
LYSMD4-201ENST00000332728 HRCP23327 699 aa29.16■■■□□ 2.26
LYSMD4-201ENST00000332728 BICRAQ9NZM4 1560 aa29.14■■■□□ 2.26
LYSMD4-201ENST00000332728 CCDC88BA6NC98 1476 aa29.13■■■□□ 2.25
LYSMD4-201ENST00000332728 ABCC8Q09428 1581 aa29.11■■■□□ 2.25
LYSMD4-201ENST00000332728 TOP2AP11388 1531 aaKnown RBP29.02■■■□□ 2.24
LYSMD4-201ENST00000332728 TTBK1Q5TCY1 1321 aaPredicted RBP28.98■■■□□ 2.23
LYSMD4-201ENST00000332728 SMARCA2P51531 1590 aa28.94■■■□□ 2.22
LYSMD4-201ENST00000332728 TRIM26Q12899 539 aaPredicted RBP28.94■■■□□ 2.22
LYSMD4-201ENST00000332728 EIF4G1Q04637 1599 aaKnown RBP28.81■■■□□ 2.2
LYSMD4-201ENST00000332728 SOGA1O94964 1423 aa28.77■■■□□ 2.2
LYSMD4-201ENST00000332728 RUSC2Q8N2Y8 1516 aa28.7■■■□□ 2.18
LYSMD4-201ENST00000332728 ATAD2BQ9ULI0 1458 aa28.65■■■□□ 2.18
LYSMD4-201ENST00000332728 RANGAP1P46060 587 aaPredicted RBP28.65■■■□□ 2.18
LYSMD4-201ENST00000332728 UBTFP17480 764 aaKnown RBP28.65■■■□□ 2.18
LYSMD4-201ENST00000332728 BAZ1BQ9UIG0 1483 aaKnown RBP28.62■■■□□ 2.17
LYSMD4-201ENST00000332728 CSRNP3Q8WYN3 585 aa28.51■■■□□ 2.15
LYSMD4-201ENST00000332728 WRNQ14191 1432 aaPredicted RBP eCLIP28.48■■■□□ 2.15
LYSMD4-201ENST00000332728 PEG3Q9GZU2 1588 aa28.38■■■□□ 2.13
LYSMD4-201ENST00000332728 SYNJ1O43426 1573 aa28.34■■■□□ 2.13
LYSMD4-201ENST00000332728 CEP162Q5TB80 1403 aa28.32■■■□□ 2.12
LYSMD4-201ENST00000332728 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.28■■■□□ 2.12
LYSMD4-201ENST00000332728 TNIKQ9UKE5 1360 aa28.13■■■□□ 2.09
LYSMD4-201ENST00000332728 GOLGA3Q08378 1498 aa28.06■■■□□ 2.08
LYSMD4-201ENST00000332728 CCER1Q8TC90 406 aaPredicted RBP28.05■■■□□ 2.08
LYSMD4-201ENST00000332728 EEA1Q15075 1411 aa28.03■■■□□ 2.08
LYSMD4-201ENST00000332728 NCAPD3P42695 1498 aa28.01■■■□□ 2.07
LYSMD4-201ENST00000332728 RAPGEF2Q9Y4G8 1499 aa28■■■□□ 2.07
LYSMD4-201ENST00000332728 CEP164Q9UPV0 1460 aa27.91■■■□□ 2.06
LYSMD4-201ENST00000332728 HNRNPUL2Q1KMD3 747 aaKnown RBP27.9■■■□□ 2.06
LYSMD4-201ENST00000332728 CLIP1P30622 1438 aa27.89■■■□□ 2.05
LYSMD4-201ENST00000332728 ZEB1P37275 1124 aaPredicted RBP27.89■■■□□ 2.05
LYSMD4-201ENST00000332728 HMGXB3Q12766 1538 aa27.85■■■□□ 2.05
LYSMD4-201ENST00000332728 CUX1P39880 1505 aa27.83■■■□□ 2.05
LYSMD4-201ENST00000332728 TOP2BQ02880 1626 aa27.82■■■□□ 2.04
LYSMD4-201ENST00000332728 APLP2Q06481 763 aa27.77■■■□□ 2.04
LYSMD4-201ENST00000332728 DNAJC5BQ9UF47 199 aa27.77■■■□□ 2.04
LYSMD4-201ENST00000332728 CFTRP13569 1480 aa27.74■■■□□ 2.03
LYSMD4-201ENST00000332728 CC2D2AQ9P2K1 1620 aa27.72■■■□□ 2.03
LYSMD4-201ENST00000332728 KIF21BO75037 1637 aa27.69■■■□□ 2.02
LYSMD4-201ENST00000332728 CADPSQ9ULU8 1353 aa27.64■■■□□ 2.01
LYSMD4-201ENST00000332728 BIVM-ERCC5R4GMW8 1640 aa27.62■■■□□ 2.01
LYSMD4-201ENST00000332728 KIF27Q86VH2 1401 aa27.59■■■□□ 2.01
LYSMD4-201ENST00000332728 NESP48681 1621 aa27.59■■■□□ 2.01
LYSMD4-201ENST00000332728 CUX2O14529 1486 aa27.57■■■□□ 2
LYSMD4-201ENST00000332728 VPS8Q8N3P4 1428 aa27.57■■■□□ 2
LYSMD4-201ENST00000332728 P3H3Q8IVL6 736 aa27.56■■■□□ 2
LYSMD4-201ENST00000332728 KANK4Q5T7N3 995 aaPredicted RBP27.54■■■□□ 2
LYSMD4-201ENST00000332728 PRXQ9BXM0 1461 aa27.51■■□□□ 1.99
LYSMD4-201ENST00000332728 ATP1B4Q9UN42 357 aaPredicted RBP27.49■■□□□ 1.99
LYSMD4-201ENST00000332728 ITGAEP38570 1179 aa27.47■■□□□ 1.99
LYSMD4-201ENST00000332728 FGD5Q6ZNL6 1462 aa27.45■■□□□ 1.99
LYSMD4-201ENST00000332728 FANCD2Q9BXW9 1451 aa27.41■■□□□ 1.98
LYSMD4-201ENST00000332728 RAD54L2Q9Y4B4 1467 aa27.41■■□□□ 1.98
LYSMD4-201ENST00000332728 ARAP1Q96P48 1450 aa27.41■■□□□ 1.98
LYSMD4-201ENST00000332728 IGF1RP08069 1367 aa27.4■■□□□ 1.98
LYSMD4-201ENST00000332728 CARMIL1Q5VZK9 1371 aa27.32■■□□□ 1.96
LYSMD4-201ENST00000332728 ERICH3Q5RHP9 1530 aa27.29■■□□□ 1.96
LYSMD4-201ENST00000332728 ARHGAP35Q9NRY4 1499 aa27.24■■□□□ 1.95
LYSMD4-201ENST00000332728 TDRD9Q8NDG6 1382 aaKnown RBP27.19■■□□□ 1.94
LYSMD4-201ENST00000332728 PRDM2Q13029 1718 aa27.17■■□□□ 1.94
LYSMD4-201ENST00000332728 DIEXFQ68CQ4 756 aaKnown RBP27.15■■□□□ 1.94
LYSMD4-201ENST00000332728 POLA1P09884 1462 aaPredicted RBP27.15■■□□□ 1.94
LYSMD4-201ENST00000332728 TOPBP1Q92547 1522 aa27.14■■□□□ 1.93
LYSMD4-201ENST00000332728 URB2Q14146 1524 aaKnown RBP27.04■■□□□ 1.92
LYSMD4-201ENST00000332728 FHOD3Q2V2M9 1422 aa27.04■■□□□ 1.92
LYSMD4-201ENST00000332728 FAM50AQ14320 339 aaKnown RBP27.03■■□□□ 1.92
LYSMD4-201ENST00000332728 DNMBPQ6XZF7 1577 aa27.01■■□□□ 1.91
LYSMD4-201ENST00000332728 ARID3CA6NKF2 412 aa26.98■■□□□ 1.91
LYSMD4-201ENST00000332728 ZNF316A6NFI3 1004 aaPredicted RBP26.95■■□□□ 1.9
LYSMD4-201ENST00000332728 ABCA10Q8WWZ4 1543 aa26.9■■□□□ 1.9
LYSMD4-201ENST00000332728 YTHDC1Q96MU7 727 aaKnown RBP26.9■■□□□ 1.9
LYSMD4-201ENST00000332728 CCNB3Q8WWL7 1395 aa26.9■■□□□ 1.9
LYSMD4-201ENST00000332728 PDS5BQ9NTI5 1447 aa26.86■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms