Protein–RNA interactions for Protein: P83369

LSM11, U7 snRNA-associated Sm-like protein LSm11, humanhuman

Known RBP eCLIP

Length 360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM11P83369 CDCA8-201ENST00000327331 2303 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.72e-7■□□□□ 8.4
LSM11P83369 CDCA8-202ENST00000373055 2469 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.952e-7■□□□□ 8.4
LSM11P83369 HIST2H2BF-205ENST00000620458 407 ntTSL 57.85□□□□□ -1.157e-7■□□□□ 8.4
LSM11P83369 HIST2H2BF-202ENST00000420462 459 ntTSL 36.86□□□□□ -1.317e-7■□□□□ 8.4
LSM11P83369 AL669831.3-208ENST00000634337 891 ntTSL 5 BASIC13.38□□□□□ -0.276e-14■□□□□ 8.4
LSM11P83369 AL669831.3-207ENST00000635509 941 ntTSL 513.38□□□□□ -0.276e-14■□□□□ 8.4
LSM11P83369 AL669831.3-203ENST00000419394 491 ntTSL 511.58□□□□□ -0.566e-14■□□□□ 8.4
LSM11P83369 AL669831.3-209ENST00000440200 413 ntTSL 58.69□□□□□ -1.026e-14■□□□□ 8.4
LSM11P83369 TMEM94-203ENST00000577194 478 ntTSL 317.17■□□□□ 0.341e-10■□□□□ 8.4
LSM11P83369 TMEM94-204ENST00000577245 384 ntTSL 36.74□□□□□ -1.331e-10■□□□□ 8.4
LSM11P83369 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.572e-7■□□□□ 8.4
LSM11P83369 NELFE-211ENST00000492185 1786 ntTSL 218.55■□□□□ 0.562e-7■□□□□ 8.4
LSM11P83369 NELFE-208ENST00000481121 1543 ntTSL 218.21■□□□□ 0.512e-7■□□□□ 8.4
LSM11P83369 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.352e-7■□□□□ 8.4
LSM11P83369 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC12.33□□□□□ -0.442e-7■□□□□ 8.4
LSM11P83369 NELFE-209ENST00000488426 1855 ntTSL 511.64□□□□□ -0.552e-7■□□□□ 8.4
LSM11P83369 NELFE-205ENST00000441998 1075 ntAPPRIS ALT2 TSL 59.63□□□□□ -0.872e-7■□□□□ 8.4
LSM11P83369 SRSF6-201ENST00000244020 4325 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.023e-9■□□□□ 8.4
LSM11P83369 CRACR2B-205ENST00000527763 1728 ntTSL 225.05■■□□□ 1.62e-7■□□□□ 8.4
LSM11P83369 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC22.03■■□□□ 1.122e-7■□□□□ 8.4
LSM11P83369 CRACR2B-210ENST00000530688 1623 ntTSL 220.78■□□□□ 0.922e-7■□□□□ 8.4
LSM11P83369 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.912e-7■□□□□ 8.4
LSM11P83369 CRACR2B-208ENST00000528694 2440 ntTSL 220.74■□□□□ 0.912e-7■□□□□ 8.4
LSM11P83369 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.492e-7■□□□□ 8.4
LSM11P83369 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC17.95■□□□□ 0.462e-7■□□□□ 8.4
LSM11P83369 CRACR2B-203ENST00000526531 714 ntTSL 316.07■□□□□ 0.162e-7■□□□□ 8.4
LSM11P83369 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC16.66■□□□□ 0.262e-11■□□□□ 8.4
LSM11P83369 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.162e-11■□□□□ 8.4
LSM11P83369 HSP90AA1-208ENST00000557234 584 ntTSL 316■□□□□ 0.156e-8■□□□□ 8.4
LSM11P83369 MFGE8-205ENST00000558018 1989 ntTSL 215.7■□□□□ 0.12e-11■□□□□ 8.4
LSM11P83369 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.022e-11■□□□□ 8.4
LSM11P83369 RPL10-208ENST00000449494 622 ntTSL 513.44□□□□□ -0.266e-15■□□□□ 8.4
LSM11P83369 HSP90AA1-206ENST00000556554 552 ntTSL 212.27□□□□□ -0.456e-8■□□□□ 8.4
LSM11P83369 RPL10-203ENST00000406022 748 ntTSL 3 BASIC11.95□□□□□ -0.56e-15■□□□□ 8.4
LSM11P83369 HSP90AA1-203ENST00000553585 581 ntTSL 310.68□□□□□ -0.76e-8■□□□□ 8.4
LSM11P83369 RPL10-209ENST00000451365 713 ntTSL 1 (best)9.34□□□□□ -0.916e-15■□□□□ 8.4
LSM11P83369 RPL10-205ENST00000427682 457 ntTSL 59.03□□□□□ -0.966e-15■□□□□ 8.4
LSM11P83369 RPL10-206ENST00000428169 292 ntTSL 58.42□□□□□ -1.066e-15■□□□□ 8.4
LSM11P83369 KPNB1-212ENST00000582126 653 ntTSL 512.85□□□□□ -0.352e-11■□□□□ 8.3
LSM11P83369 KPNB1-209ENST00000580158 603 ntTSL 29.23□□□□□ -0.932e-11■□□□□ 8.3
LSM11P83369 KPNB1-201ENST00000290158 6139 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.992e-11■□□□□ 8.3
LSM11P83369 KPNB1-202ENST00000535458 3163 ntTSL 2 BASIC8.35□□□□□ -1.072e-11■□□□□ 8.3
LSM11P83369 KPNB1-211ENST00000582097 2347 ntTSL 27.8□□□□□ -1.162e-11■□□□□ 8.3
LSM11P83369 KPNB1-203ENST00000540627 2989 ntTSL 2 BASIC6.82□□□□□ -1.322e-11■□□□□ 8.3
LSM11P83369 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC20.06■□□□□ 0.81e-7■□□□□ 8.3
LSM11P83369 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.771e-7■□□□□ 8.3
LSM11P83369 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC17.14■□□□□ 0.331e-7■□□□□ 8.3
LSM11P83369 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC16.83■□□□□ 0.281e-7■□□□□ 8.3
LSM11P83369 EXOC3L4-203ENST00000559661 665 ntTSL 515.49■□□□□ 0.078e-12■□□□□ 8.3
LSM11P83369 MXRA8-207ENST00000474033 1171 ntTSL 1 (best)11.84□□□□□ -0.511e-7■□□□□ 8.3
LSM11P83369 MST1L-203ENST00000544155 592 ntTSL 211.69□□□□□ -0.541e-7■□□□□ 8.3
LSM11P83369 RSRP1-205ENST00000475766 525 ntTSL 410□□□□□ -0.818e-14■□□□□ 8.3
LSM11P83369 RNASET2-205ENST00000467705 524 ntTSL 59.03□□□□□ -0.964e-21■□□□□ 8.3
LSM11P83369 CPSF1-202ENST00000527827 619 ntTSL 220.63■□□□□ 0.895e-10■□□□□ 8.3
LSM11P83369 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC22.74■■□□□ 1.236e-6■□□□□ 8.3
LSM11P83369 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC22.23■■□□□ 1.156e-6■□□□□ 8.3
LSM11P83369 HLA-A-207ENST00000495183 1766 nt21.84■■□□□ 1.094e-9■□□□□ 8.3
LSM11P83369 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.976e-6■□□□□ 8.3
LSM11P83369 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC21.02■□□□□ 0.966e-6■□□□□ 8.3
LSM11P83369 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.466e-6■□□□□ 8.3
LSM11P83369 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.266e-6■□□□□ 8.3
LSM11P83369 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC16.12■□□□□ 0.174e-9■□□□□ 8.3
LSM11P83369 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.146e-6■□□□□ 8.3
LSM11P83369 HLA-A-202ENST00000376806 1854 ntBASIC15.63■□□□□ 0.094e-9■□□□□ 8.3
LSM11P83369 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC15.49■□□□□ 0.074e-9■□□□□ 8.3
LSM11P83369 HLA-A-201ENST00000376802 1334 ntBASIC15.2■□□□□ 0.024e-9■□□□□ 8.3
LSM11P83369 HLA-A-208ENST00000496081 1786 nt15.13■□□□□ 0.014e-9■□□□□ 8.3
LSM11P83369 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.016e-6■□□□□ 8.3
LSM11P83369 B4GALNT4-205ENST00000534778 876 ntTSL 314.48□□□□□ -0.096e-6■□□□□ 8.3
LSM11P83369 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.26e-6■□□□□ 8.3
LSM11P83369 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC13.73□□□□□ -0.216e-6■□□□□ 8.3
LSM11P83369 CDC16-208ENST00000484907 1038 ntTSL 313.52□□□□□ -0.256e-6■□□□□ 8.3
LSM11P83369 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.276e-6■□□□□ 8.3
LSM11P83369 TJP2-211ENST00000636247 3725 ntTSL 1 (best)12.37□□□□□ -0.436e-6■□□□□ 8.3
LSM11P83369 PRPF39-202ENST00000424478 3174 ntTSL 212.3□□□□□ -0.446e-6■□□□□ 8.3
LSM11P83369 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.476e-6■□□□□ 8.3
LSM11P83369 ZDHHC4-208ENST00000474738 718 ntTSL 212.14□□□□□ -0.476e-6■□□□□ 8.3
LSM11P83369 ZDHHC4-204ENST00000396709 1485 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.476e-6■□□□□ 8.3
LSM11P83369 ZDHHC4-202ENST00000396706 1942 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.56e-6■□□□□ 8.3
LSM11P83369 TJP2-209ENST00000539225 3838 ntAPPRIS ALT2 TSL 2 BASIC11.64□□□□□ -0.556e-6■□□□□ 8.3
LSM11P83369 PRPF39-203ENST00000477626 3507 ntTSL 211.27□□□□□ -0.66e-6■□□□□ 8.3
LSM11P83369 ASXL1-207ENST00000553345 809 ntTSL 510.02□□□□□ -0.816e-6■□□□□ 8.3
LSM11P83369 CDC16-201ENST00000252457 2034 ntAPPRIS ALT1 TSL 1 (best) BASIC9.75□□□□□ -0.856e-6■□□□□ 8.3
LSM11P83369 CDC16-205ENST00000375308 2034 ntTSL 1 (best) BASIC9.75□□□□□ -0.856e-6■□□□□ 8.3
LSM11P83369 LINC01138-209ENST00000639181 1534 ntTSL 5 BASIC9.75□□□□□ -0.856e-6■□□□□ 8.3
LSM11P83369 CDC16-202ENST00000252458 1991 ntTSL 1 (best) BASIC8.97□□□□□ -0.976e-6■□□□□ 8.3
LSM11P83369 KANSL3-201ENST00000354204 5253 ntTSL 1 (best)8.91□□□□□ -0.986e-6■□□□□ 8.3
LSM11P83369 LINC01138-210ENST00000640832 1709 ntTSL 5 BASIC8.85□□□□□ -0.996e-6■□□□□ 8.3
LSM11P83369 KANSL3-208ENST00000447759 5012 ntTSL 58.78□□□□□ -16e-6■□□□□ 8.3
LSM11P83369 KANSL3-206ENST00000431828 5153 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.036e-6■□□□□ 8.3
LSM11P83369 KANSL3-218ENST00000487070 4937 ntTSL 1 (best)8.4□□□□□ -1.076e-6■□□□□ 8.3
LSM11P83369 LINC01138-204ENST00000613452 1050 ntTSL 1 (best)8.39□□□□□ -1.076e-6■□□□□ 8.3
LSM11P83369 KANSL3-204ENST00000420155 5028 ntTSL 1 (best)8.34□□□□□ -1.086e-6■□□□□ 8.3
LSM11P83369 LINC01138-208ENST00000639159 1521 ntTSL 5 BASIC6.13□□□□□ -1.436e-6■□□□□ 8.3
LSM11P83369 PRPF39-206ENST00000554429 2977 ntTSL 54.26□□□□□ -1.736e-6■□□□□ 8.3
LSM11P83369 PRPF39-207ENST00000554439 2982 ntTSL 54.26□□□□□ -1.736e-6■□□□□ 8.3
LSM11P83369 PRPF39-208ENST00000554785 2121 ntTSL 24.22□□□□□ -1.736e-6■□□□□ 8.3
LSM11P83369 PRPF39-205ENST00000554081 3223 ntTSL 52.94□□□□□ -1.946e-6■□□□□ 8.3
LSM11P83369 SLC6A8-207ENST00000466243 544 ntTSL 211.85□□□□□ -0.516e-32■□□□□ 8.3
LSM11P83369 TFR2-204ENST00000462090 1844 ntTSL 517.42■□□□□ 0.382e-7■□□□□ 8.3
Retrieved 100 of 11,495 protein–RNA pairs in 271.4 ms