RNA–Protein interactions for RNA: ENST00000554429.5

PRPF39-206, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 5

Gene PRPF39, Length 2,977 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-206ENST00000554429 AEBP2Q6ZN18 517 aaPredicted RBP10.23□□□□□ -0.77
PRPF39-206ENST00000554429 CHIC1Q5VXU3 224 aa9.82□□□□□ -0.84
PRPF39-206ENST00000554429 SENP3Q9H4L4 574 aaPredicted RBP9.08□□□□□ -0.96
PRPF39-206ENST00000554429 POTEDQ86YR6 584 aa9.03□□□□□ -0.96
PRPF39-206ENST00000554429 PHF23Q9BUL5 403 aaPredicted RBP8.73□□□□□ -1.01
PRPF39-206ENST00000554429 FOXD1Q16676 465 aa8.37□□□□□ -1.07
PRPF39-206ENST00000554429 MSH5O43196 834 aa8.31□□□□□ -1.08
PRPF39-206ENST00000554429 PIAS4Q8N2W9 510 aaPredicted RBP7.68□□□□□ -1.18
PRPF39-206ENST00000554429 CACNB1Q02641 598 aaPredicted RBP7.38□□□□□ -1.23
PRPF39-206ENST00000554429 PPP6R1Q9UPN7 881 aa7.2□□□□□ -1.26
PRPF39-206ENST00000554429 ADRA2BP18089 450 aa7.16□□□□□ -1.26
PRPF39-206ENST00000554429 PLPPR3Q6T4P5 718 aa7.16□□□□□ -1.26
PRPF39-206ENST00000554429 DMRT2Q9Y5R5 561 aa7.07□□□□□ -1.28
PRPF39-206ENST00000554429 POTEHQ6S545 545 aa6.97□□□□□ -1.29
PRPF39-206ENST00000554429 RNF39Q9H2S5 420 aa6.91□□□□□ -1.3
PRPF39-206ENST00000554429 C1QBPQ07021 282 aaKnown RBP6.89□□□□□ -1.31
PRPF39-206ENST00000554429 SCAF1Q9H7N4 1312 aaKnown RBP6.89□□□□□ -1.31
PRPF39-206ENST00000554429 MAPK8IP2Q13387 824 aaPredicted RBP6.72□□□□□ -1.33
PRPF39-206ENST00000554429 DNAJC5BQ9UF47 199 aa6.72□□□□□ -1.33
PRPF39-206ENST00000554429 DCAF8L1A6NGE4 600 aa6.62□□□□□ -1.35
PRPF39-206ENST00000554429 HOXD11P31277 338 aaPredicted RBP6.58□□□□□ -1.36
PRPF39-206ENST00000554429 NISCHQ9Y2I1 1504 aa6.52□□□□□ -1.37
PRPF39-206ENST00000554429 RNF216Q9NWF9 866 aaPredicted RBP6.36□□□□□ -1.39
PRPF39-206ENST00000554429 SP7Q8TDD2 431 aaPredicted RBP6.26□□□□□ -1.41
PRPF39-206ENST00000554429 CNKSR2Q8WXI2 1034 aa6.24□□□□□ -1.41
PRPF39-206ENST00000554429 DSG3P32926 999 aa6.21□□□□□ -1.41
PRPF39-206ENST00000554429 GRWD1Q9BQ67 446 aaKnown RBP eCLIP6.18□□□□□ -1.422e-6■■□□□ 11.5
PRPF39-206ENST00000554429 RBM42Q9BTD8 480 aaKnown RBP6.13□□□□□ -1.43
PRPF39-206ENST00000554429 PPP4R3CPQ6ZMV5 832 aa6.11□□□□□ -1.43
PRPF39-206ENST00000554429 CHRDL2Q6WN34 429 aa6.09□□□□□ -1.44
PRPF39-206ENST00000554429 CAPN15O75808 1086 aa6.06□□□□□ -1.44
PRPF39-206ENST00000554429 APLP2Q06481 763 aa6.05□□□□□ -1.44
PRPF39-206ENST00000554429 CCDC180Q9P1Z9 1646 aa6.01□□□□□ -1.45
PRPF39-206ENST00000554429 SPINK5Q9NQ38 1064 aaPredicted RBP5.94□□□□□ -1.46
PRPF39-206ENST00000554429 ZNF219Q9P2Y4 722 aaPredicted RBP5.93□□□□□ -1.46
PRPF39-206ENST00000554429 U3KPZ7 1027 aaPredicted RBP5.93□□□□□ -1.46
PRPF39-206ENST00000554429 PLSCR2Q9NRY7 297 aa5.9□□□□□ -1.46
PRPF39-206ENST00000554429 NCBP3Q53F19 620 aaKnown RBP5.85□□□□□ -1.47
PRPF39-206ENST00000554429 LHX8Q68G74 356 aa5.85□□□□□ -1.47
PRPF39-206ENST00000554429 HAX1O00165 279 aa5.83□□□□□ -1.48
PRPF39-206ENST00000554429 ABCC9O60706 1549 aa5.81□□□□□ -1.48
PRPF39-206ENST00000554429 AKT1S1Q96B36 256 aa5.8□□□□□ -1.48
PRPF39-206ENST00000554429 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP5.79□□□□□ -1.48
PRPF39-206ENST00000554429 HNRNPUL2Q1KMD3 747 aaKnown RBP5.79□□□□□ -1.48
PRPF39-206ENST00000554429 PIP4P2Q8N4L2 257 aa5.78□□□□□ -1.48
PRPF39-206ENST00000554429 ABCB7O75027 752 aa5.75□□□□□ -1.49
PRPF39-206ENST00000554429 TRHP20396 242 aaPredicted RBP5.75□□□□□ -1.49
PRPF39-206ENST00000554429 PCDH10Q9P2E7 1040 aa5.75□□□□□ -1.49
PRPF39-206ENST00000554429 FXR2P51116 673 aaKnown RBP eCLIP5.72□□□□□ -1.49
PRPF39-206ENST00000554429 SAMD1Q6SPF0 538 aaPredicted RBP5.66□□□□□ -1.5
PRPF39-206ENST00000554429 RB1CC1Q8TDY2 1594 aa5.66□□□□□ -1.5
PRPF39-206ENST00000554429 NACADO15069 1562 aa5.63□□□□□ -1.51
PRPF39-206ENST00000554429 REM2Q8IYK8 340 aaPredicted RBP5.63□□□□□ -1.51
PRPF39-206ENST00000554429 MYO15BQ96JP2 1530 aa5.63□□□□□ -1.51
PRPF39-206ENST00000554429 CLCN6P51797 869 aa5.61□□□□□ -1.51
PRPF39-206ENST00000554429 ZBTB12Q9Y330 459 aaPredicted RBP5.61□□□□□ -1.51
PRPF39-206ENST00000554429 DNAJC5Q9H3Z4 198 aa5.59□□□□□ -1.51
PRPF39-206ENST00000554429 GABBR2O75899 941 aa5.57□□□□□ -1.52
PRPF39-206ENST00000554429 C19orf67A6NJJ6 358 aa5.57□□□□□ -1.52
PRPF39-206ENST00000554429 EVX2Q03828 476 aa5.57□□□□□ -1.52
PRPF39-206ENST00000554429 UNC13AQ9UPW8 1703 aa5.57□□□□□ -1.52
PRPF39-206ENST00000554429 SHROOM4Q9ULL8 1493 aa5.54□□□□□ -1.52
PRPF39-206ENST00000554429 NPM3O75607 178 aaKnown RBP5.54□□□□□ -1.52
PRPF39-206ENST00000554429 PITPNM1O00562 1244 aa5.54□□□□□ -1.52
PRPF39-206ENST00000554429 DCAF1Q9Y4B6 1507 aa5.5□□□□□ -1.53
PRPF39-206ENST00000554429 BICRAQ9NZM4 1560 aa5.5□□□□□ -1.53
PRPF39-206ENST00000554429 POTEMA6NI47 508 aa5.49□□□□□ -1.53
PRPF39-206ENST00000554429 POLA2Q14181 598 aa5.48□□□□□ -1.53
PRPF39-206ENST00000554429 POTEGQ6S5H5 508 aa5.46□□□□□ -1.54
PRPF39-206ENST00000554429 SLC24A1O60721 1099 aa5.45□□□□□ -1.54
PRPF39-206ENST00000554429 ILDR1Q86SU0 546 aaPredicted RBP5.44□□□□□ -1.54
PRPF39-206ENST00000554429 SLC4A2P04920 1241 aa5.43□□□□□ -1.54
PRPF39-206ENST00000554429 ZCCHC6Q5VYS8 1495 aaKnown RBP5.42□□□□□ -1.54
PRPF39-206ENST00000554429 PRKAR2AP13861 404 aaKnown RBP5.4□□□□□ -1.54
PRPF39-206ENST00000554429 POTEIP0CG38 1075 aa5.37□□□□□ -1.55
PRPF39-206ENST00000554429 CC2D2AQ9P2K1 1620 aa5.35□□□□□ -1.55
PRPF39-206ENST00000554429 EIF4G1Q04637 1599 aaKnown RBP5.33□□□□□ -1.56
PRPF39-206ENST00000554429 SPDYE1Q8NFV5 336 aaPredicted RBP5.33□□□□□ -1.56
PRPF39-206ENST00000554429 OTUD5Q96G74 571 aa5.32□□□□□ -1.56
PRPF39-206ENST00000554429 DCBLD2Q96PD2 775 aa5.32□□□□□ -1.56
PRPF39-206ENST00000554429 PABPN1Q86U42 306 aaKnown RBP eCLIP5.31□□□□□ -1.562e-9■■■□□ 16.8
PRPF39-206ENST00000554429 CECR2Q9BXF3 1484 aa5.29□□□□□ -1.56
PRPF39-206ENST00000554429 MAMSTRQ6ZN01 415 aa5.28□□□□□ -1.56
PRPF39-206ENST00000554429 OSCARQ8IYS5 282 aa5.28□□□□□ -1.56
PRPF39-206ENST00000554429 MYCNP04198 464 aaPredicted RBP5.28□□□□□ -1.56
PRPF39-206ENST00000554429 SCRIBQ14160 1630 aa5.27□□□□□ -1.57
PRPF39-206ENST00000554429 SPDYE2BA6NHP3 402 aa5.27□□□□□ -1.57
PRPF39-206ENST00000554429 SPDYE6P0CI01 402 aa5.27□□□□□ -1.57
PRPF39-206ENST00000554429 SPDYE2Q495Y8 402 aa5.27□□□□□ -1.57
PRPF39-206ENST00000554429 CD44P16070 742 aaKnown RBP5.2□□□□□ -1.58
PRPF39-206ENST00000554429 DCAF8L2P0C7V8 631 aa5.19□□□□□ -1.58
PRPF39-206ENST00000554429 CUX2O14529 1486 aa5.19□□□□□ -1.58
PRPF39-206ENST00000554429 ZNF579Q8NAF0 562 aaKnown RBP5.19□□□□□ -1.58
PRPF39-206ENST00000554429 NCAPD3P42695 1498 aa5.17□□□□□ -1.58
PRPF39-206ENST00000554429 HMGXB3Q12766 1538 aa5.17□□□□□ -1.58
PRPF39-206ENST00000554429 CLEC11AQ9Y240 323 aa5.16□□□□□ -1.58
PRPF39-206ENST00000554429 PEG3Q9GZU2 1588 aa5.15□□□□□ -1.58
PRPF39-206ENST00000554429 SMARCA2P51531 1590 aa5.13□□□□□ -1.59
PRPF39-206ENST00000554429 CDAN1Q8IWY9 1227 aa5.12□□□□□ -1.59
PRPF39-206ENST00000554429 POTEB2H3BUK9 544 aa5.12□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms