RNA–Protein interactions for RNA: ENST00000580158.1

KPNB1-209, Transcript of karyopherin subunit beta 1, human

TSL 2

Gene KPNB1, Length 603 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
KPNB1-209	ENST00000580158	AEBP2	Q6ZN18	517 aa	Predicted RBP	21.52	■■□□□ 1.04
KPNB1-209	ENST00000580158	CHIC1	Q5VXU3	224 aa		20.43	■□□□□ 0.86
KPNB1-209	ENST00000580158	SENP3	Q9H4L4	574 aa	Predicted RBP	18.45	■□□□□ 0.54
KPNB1-209	ENST00000580158	PHF23	Q9BUL5	403 aa	Predicted RBP	18.2	■□□□□ 0.5
KPNB1-209	ENST00000580158	FOXD1	Q16676	465 aa		17.16	■□□□□ 0.34
KPNB1-209	ENST00000580158	PLPPR3	Q6T4P5	718 aa		16.34	■□□□□ 0.21
KPNB1-209	ENST00000580158	MSH5	O43196	834 aa		16.13	■□□□□ 0.17
KPNB1-209	ENST00000580158	PIAS4	Q8N2W9	510 aa	Predicted RBP	16.05	■□□□□ 0.16
KPNB1-209	ENST00000580158	PPP6R1	Q9UPN7	881 aa		15.99	■□□□□ 0.15
KPNB1-209	ENST00000580158	ADRA2B	P18089	450 aa		15.96	■□□□□ 0.15
KPNB1-209	ENST00000580158	POTED	Q86YR6	584 aa		15.8	■□□□□ 0.12
KPNB1-209	ENST00000580158	NISCH	Q9Y2I1	1504 aa		15.56	■□□□□ 0.08
KPNB1-209	ENST00000580158	ABCC9	O60706	1549 aa		14.86	□□□□□ -0.03
KPNB1-209	ENST00000580158	SCAF1	Q9H7N4	1312 aa	Known RBP	14.7	□□□□□ -0.06
KPNB1-209	ENST00000580158	MAPK8IP2	Q13387	824 aa	Predicted RBP	14.67	□□□□□ -0.06
KPNB1-209	ENST00000580158	DMRT2	Q9Y5R5	561 aa		14.59	□□□□□ -0.07
KPNB1-209	ENST00000580158	DNAJC5B	Q9UF47	199 aa		14.44	□□□□□ -0.1
KPNB1-209	ENST00000580158	CCDC180	Q9P1Z9	1646 aa		14.3	□□□□□ -0.12
KPNB1-209	ENST00000580158	PPP4R3CP	Q6ZMV5	832 aa		14.3	□□□□□ -0.12
KPNB1-209	ENST00000580158	DCAF8L1	A6NGE4	600 aa		14.07	□□□□□ -0.16
KPNB1-209	ENST00000580158	CNKSR2	Q8WXI2	1034 aa		14.07	□□□□□ -0.16
KPNB1-209	ENST00000580158	HOXD11	P31277	338 aa	Predicted RBP	14.03	□□□□□ -0.16
KPNB1-209	ENST00000580158	RNF216	Q9NWF9	866 aa	Predicted RBP	13.93	□□□□□ -0.18
KPNB1-209	ENST00000580158	RB1CC1	Q8TDY2	1594 aa		13.92	□□□□□ -0.18
KPNB1-209	ENST00000580158	CACNB1	Q02641	598 aa	Predicted RBP	13.9	□□□□□ -0.18
KPNB1-209	ENST00000580158	DNAJC5	Q9H3Z4	198 aa		13.8	□□□□□ -0.2
KPNB1-209	ENST00000580158	NCBP3	Q53F19	620 aa	Known RBP	13.79	□□□□□ -0.2
KPNB1-209	ENST00000580158	PABPN1	Q86U42	306 aa	Known RBP eCLIP	13.73	□□□□□ -0.21	6e-6	■■□□□ 12.8
KPNB1-209	ENST00000580158	RNF39	Q9H2S5	420 aa		13.72	□□□□□ -0.21
KPNB1-209	ENST00000580158	NACAD	O15069	1562 aa		13.66	□□□□□ -0.22
KPNB1-209	ENST00000580158	UNC13A	Q9UPW8	1703 aa		13.64	□□□□□ -0.23
KPNB1-209	ENST00000580158	C1QBP	Q07021	282 aa	Known RBP	13.56	□□□□□ -0.24
KPNB1-209	ENST00000580158	NPM3	O75607	178 aa	Known RBP	13.51	□□□□□ -0.25
KPNB1-209	ENST00000580158	DCAF8L2	P0C7V8	631 aa		13.5	□□□□□ -0.25
KPNB1-209	ENST00000580158	BICRA	Q9NZM4	1560 aa		13.46	□□□□□ -0.25
KPNB1-209	ENST00000580158	CECR2	Q9BXF3	1484 aa		13.46	□□□□□ -0.25
KPNB1-209	ENST00000580158	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	13.44	□□□□□ -0.26	5e-10	■□□□□ 11.1
KPNB1-209	ENST00000580158	CC2D2A	Q9P2K1	1620 aa		13.42	□□□□□ -0.26
KPNB1-209	ENST00000580158	SHROOM4	Q9ULL8	1493 aa		13.25	□□□□□ -0.29
KPNB1-209	ENST00000580158	MYO15B	Q96JP2	1530 aa		13.22	□□□□□ -0.29
KPNB1-209	ENST00000580158	EIF4G1	Q04637	1599 aa	Known RBP	13.21	□□□□□ -0.29
KPNB1-209	ENST00000580158	KCNA4	P22459	653 aa		13.19	□□□□□ -0.3
KPNB1-209	ENST00000580158	CUX2	O14529	1486 aa		13.1	□□□□□ -0.31
KPNB1-209	ENST00000580158		U3KPZ7	1027 aa	Predicted RBP	13.07	□□□□□ -0.32
KPNB1-209	ENST00000580158	TRIM41	Q8WV44	630 aa		12.97	□□□□□ -0.33
KPNB1-209	ENST00000580158	SCRIB	Q14160	1630 aa		12.95	□□□□□ -0.34
KPNB1-209	ENST00000580158	CAPN15	O75808	1086 aa		12.94	□□□□□ -0.34
KPNB1-209	ENST00000580158	ERCC6	Q03468	1493 aa		12.92	□□□□□ -0.34
KPNB1-209	ENST00000580158	SPINK5	Q9NQ38	1064 aa	Predicted RBP	12.9	□□□□□ -0.34
KPNB1-209	ENST00000580158	SLC4A2	P04920	1241 aa		12.89	□□□□□ -0.35
KPNB1-209	ENST00000580158	DSG3	P32926	999 aa		12.84	□□□□□ -0.35
KPNB1-209	ENST00000580158	APLP2	Q06481	763 aa		12.82	□□□□□ -0.36
KPNB1-209	ENST00000580158	DCAF1	Q9Y4B6	1507 aa		12.81	□□□□□ -0.36
KPNB1-209	ENST00000580158	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	12.78	□□□□□ -0.36
KPNB1-209	ENST00000580158	HNRNPUL2	Q1KMD3	747 aa	Known RBP	12.78	□□□□□ -0.36
KPNB1-209	ENST00000580158	ZCCHC6	Q5VYS8	1495 aa	Known RBP	12.73	□□□□□ -0.37
KPNB1-209	ENST00000580158	TRH	P20396	242 aa	Predicted RBP	12.73	□□□□□ -0.37
KPNB1-209	ENST00000580158	ZNF219	Q9P2Y4	722 aa	Predicted RBP	12.7	□□□□□ -0.38
KPNB1-209	ENST00000580158	SAMD1	Q6SPF0	538 aa	Predicted RBP	12.67	□□□□□ -0.38
KPNB1-209	ENST00000580158	ABCB7	O75027	752 aa		12.6	□□□□□ -0.39
KPNB1-209	ENST00000580158	THOC2	Q8NI27	1593 aa	Known RBP	12.58	□□□□□ -0.4
KPNB1-209	ENST00000580158	NCAPD3	P42695	1498 aa		12.57	□□□□□ -0.4
KPNB1-209	ENST00000580158	NES	P48681	1621 aa		12.56	□□□□□ -0.4
KPNB1-209	ENST00000580158	MYCN	P04198	464 aa	Predicted RBP	12.53	□□□□□ -0.4
KPNB1-209	ENST00000580158	SLC4A1AP	Q9BWU0	796 aa	Known RBP	12.49	□□□□□ -0.41
KPNB1-209	ENST00000580158	SMARCA2	P51531	1590 aa		12.47	□□□□□ -0.41
KPNB1-209	ENST00000580158	KIF21A	Q7Z4S6	1674 aa		12.46	□□□□□ -0.41
KPNB1-209	ENST00000580158	LAMC3	Q9Y6N6	1575 aa		12.44	□□□□□ -0.42
KPNB1-209	ENST00000580158	HMGXB3	Q12766	1538 aa		12.43	□□□□□ -0.42
KPNB1-209	ENST00000580158	ATAD2B	Q9ULI0	1458 aa		12.43	□□□□□ -0.42
KPNB1-209	ENST00000580158	OSCAR	Q8IYS5	282 aa		12.43	□□□□□ -0.42
KPNB1-209	ENST00000580158	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	12.42	□□□□□ -0.42
KPNB1-209	ENST00000580158	POTEH	Q6S545	545 aa		12.39	□□□□□ -0.43
KPNB1-209	ENST00000580158	PDS5B	Q9NTI5	1447 aa		12.38	□□□□□ -0.43
KPNB1-209	ENST00000580158	POLA2	Q14181	598 aa		12.36	□□□□□ -0.43
KPNB1-209	ENST00000580158	FOXD4L1	Q9NU39	408 aa		12.36	□□□□□ -0.43
KPNB1-209	ENST00000580158	BAZ1B	Q9UIG0	1483 aa	Known RBP	12.32	□□□□□ -0.44
KPNB1-209	ENST00000580158	RBM42	Q9BTD8	480 aa	Known RBP	12.31	□□□□□ -0.44
KPNB1-209	ENST00000580158	RIMBP3C	A6NJZ7	1639 aa		12.3	□□□□□ -0.44
KPNB1-209	ENST00000580158	RIMBP3B	A6NNM3	1639 aa		12.3	□□□□□ -0.44
KPNB1-209	ENST00000580158	RIMBP3	Q9UFD9	1639 aa		12.3	□□□□□ -0.44
KPNB1-209	ENST00000580158	SMARCA4	P51532	1647 aa		12.29	□□□□□ -0.44
KPNB1-209	ENST00000580158	MRC2	Q9UBG0	1479 aa		12.28	□□□□□ -0.44
KPNB1-209	ENST00000580158	WDR62	O43379	1518 aa		12.27	□□□□□ -0.45
KPNB1-209	ENST00000580158	ATF5	Q9Y2D1	282 aa	Predicted RBP	12.19	□□□□□ -0.46
KPNB1-209	ENST00000580158	ARHGEF11	O15085	1522 aa		12.17	□□□□□ -0.46
KPNB1-209	ENST00000580158	CYB5RL	Q6IPT4	315 aa		12.17	□□□□□ -0.46
KPNB1-209	ENST00000580158	CADPS	Q9ULU8	1353 aa		12.17	□□□□□ -0.46
KPNB1-209	ENST00000580158	PEG3	Q9GZU2	1588 aa		12.16	□□□□□ -0.46
KPNB1-209	ENST00000580158	ZBTB12	Q9Y330	459 aa	Predicted RBP	12.13	□□□□□ -0.47
KPNB1-209	ENST00000580158	CEP164	Q9UPV0	1460 aa		12.13	□□□□□ -0.47
KPNB1-209	ENST00000580158	ZBTB22	O15209	634 aa		12.08	□□□□□ -0.48
KPNB1-209	ENST00000580158	FANCD2	Q9BXW9	1451 aa		12.03	□□□□□ -0.48
KPNB1-209	ENST00000580158	CHRDL2	Q6WN34	429 aa		12.02	□□□□□ -0.49
KPNB1-209	ENST00000580158	ATXN8OS	P0DMR3	200 aa		12.01	□□□□□ -0.49
KPNB1-209	ENST00000580158	AKT1S1	Q96B36	256 aa		12	□□□□□ -0.49
KPNB1-209	ENST00000580158	ARAP1	Q96P48	1450 aa		11.98	□□□□□ -0.49
KPNB1-209	ENST00000580158	MROH2B	Q7Z745	1585 aa		11.96	□□□□□ -0.5
KPNB1-209	ENST00000580158	URB2	Q14146	1524 aa	Known RBP	11.94	□□□□□ -0.5
KPNB1-209	ENST00000580158	CHD1	O14646	1710 aa		11.93	□□□□□ -0.5

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