RNA–Protein interactions for RNA: ENST00000488426.5

NELFE-209, Transcript of negative elongation factor complex member E, humanhuman

TSL 5

Gene NELFE, Length 1,855 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NELFE-209ENST00000488426 NISCHQ9Y2I1 1504 aa29.48■■■□□ 2.31
NELFE-209ENST00000488426 CCDC180Q9P1Z9 1646 aa26.19■■□□□ 1.78
NELFE-209ENST00000488426 ABCC9O60706 1549 aa26.09■■□□□ 1.77
NELFE-209ENST00000488426 DCAF8L2P0C7V8 631 aa24.91■■□□□ 1.58
NELFE-209ENST00000488426 RB1CC1Q8TDY2 1594 aa24.82■■□□□ 1.56
NELFE-209ENST00000488426 NACADO15069 1562 aa24.73■■□□□ 1.55
NELFE-209ENST00000488426 ZCCHC6Q5VYS8 1495 aaKnown RBP24.48■■□□□ 1.51
NELFE-209ENST00000488426 MYO15BQ96JP2 1530 aa24.46■■□□□ 1.51
NELFE-209ENST00000488426 PABPN1Q86U42 306 aaKnown RBP eCLIP24.43■■□□□ 1.5
NELFE-209ENST00000488426 DNAJC5BQ9UF47 199 aa24.35■■□□□ 1.49
NELFE-209ENST00000488426 UNC13AQ9UPW8 1703 aa24.34■■□□□ 1.49
NELFE-209ENST00000488426 DCAF1Q9Y4B6 1507 aa24.28■■□□□ 1.48
NELFE-209ENST00000488426 BICRAQ9NZM4 1560 aa24.2■■□□□ 1.47
NELFE-209ENST00000488426 SCRIBQ14160 1630 aa24.03■■□□□ 1.44
NELFE-209ENST00000488426 SHROOM4Q9ULL8 1493 aa23.69■■□□□ 1.38
NELFE-209ENST00000488426 EIF4G1Q04637 1599 aaKnown RBP23.54■■□□□ 1.36
NELFE-209ENST00000488426 CC2D2AQ9P2K1 1620 aa23.52■■□□□ 1.36
NELFE-209ENST00000488426 CECR2Q9BXF3 1484 aa23.42■■□□□ 1.34
NELFE-209ENST00000488426 SMARCA4P51532 1647 aa22.91■■□□□ 1.26
NELFE-209ENST00000488426 ATAD2BQ9ULI0 1458 aa22.89■■□□□ 1.26
NELFE-209ENST00000488426 NCAPD3P42695 1498 aa22.89■■□□□ 1.25
NELFE-209ENST00000488426 BAZ1AQ9NRL2 1556 aaPredicted RBP22.8■■□□□ 1.24
NELFE-209ENST00000488426 MROH2BQ7Z745 1585 aa22.78■■□□□ 1.24
NELFE-209ENST00000488426 SMARCA2P51531 1590 aa22.75■■□□□ 1.23
NELFE-209ENST00000488426 HMGXB3Q12766 1538 aa22.68■■□□□ 1.22
NELFE-209ENST00000488426 PEG3Q9GZU2 1588 aa22.65■■□□□ 1.22
NELFE-209ENST00000488426 BAZ1BQ9UIG0 1483 aaKnown RBP22.65■■□□□ 1.22
NELFE-209ENST00000488426 NESP48681 1621 aa22.54■■□□□ 1.2
NELFE-209ENST00000488426 WIZO95785 1651 aa22.52■■□□□ 1.2
NELFE-209ENST00000488426 SUPT5HO00267 1087 aaKnown RBP22.49■■□□□ 1.19
NELFE-209ENST00000488426 RSF1Q96T23 1441 aaPredicted RBP22.43■■□□□ 1.18
NELFE-209ENST00000488426 ERCC6Q03468 1493 aa22.41■■□□□ 1.18
NELFE-209ENST00000488426 LAMC3Q9Y6N6 1575 aa22.26■■□□□ 1.15
NELFE-209ENST00000488426 CADPSQ9ULU8 1353 aa22.23■■□□□ 1.15
NELFE-209ENST00000488426 CUX2O14529 1486 aa22.21■■□□□ 1.15
NELFE-209ENST00000488426 TOP2AP11388 1531 aaKnown RBP22.17■■□□□ 1.14
NELFE-209ENST00000488426 KIF21AQ7Z4S6 1674 aa22.16■■□□□ 1.14
NELFE-209ENST00000488426 PDS5BQ9NTI5 1447 aa22.15■■□□□ 1.14
NELFE-209ENST00000488426 THOC2Q8NI27 1593 aaKnown RBP22.12■■□□□ 1.13
NELFE-209ENST00000488426 CFTRP13569 1480 aa22.04■■□□□ 1.12
NELFE-209ENST00000488426 CCDC88BA6NC98 1476 aa22.01■■□□□ 1.11
NELFE-209ENST00000488426 DNAJC5Q9H3Z4 198 aa22■■□□□ 1.11
NELFE-209ENST00000488426 FANCD2Q9BXW9 1451 aa21.97■■□□□ 1.11
NELFE-209ENST00000488426 MRC2Q9UBG0 1479 aa21.95■■□□□ 1.1
NELFE-209ENST00000488426 CEP164Q9UPV0 1460 aa21.92■■□□□ 1.1
NELFE-209ENST00000488426 WDR62O43379 1518 aa21.88■■□□□ 1.09
NELFE-209ENST00000488426 URB2Q14146 1524 aaKnown RBP21.81■■□□□ 1.08
NELFE-209ENST00000488426 PRDM2Q13029 1718 aa21.72■■□□□ 1.07
NELFE-209ENST00000488426 TOPBP1Q92547 1522 aa21.59■■□□□ 1.05
NELFE-209ENST00000488426 CHIC1Q5VXU3 224 aa21.57■■□□□ 1.04
NELFE-209ENST00000488426 ZNF608Q9ULD9 1512 aaPredicted RBP21.53■■□□□ 1.04
NELFE-209ENST00000488426 DNMBPQ6XZF7 1577 aa21.49■■□□□ 1.03
NELFE-209ENST00000488426 IFT140Q96RY7 1462 aa21.47■■□□□ 1.03
NELFE-209ENST00000488426 ABCC8Q09428 1581 aa21.46■■□□□ 1.03
NELFE-209ENST00000488426 POLA1P09884 1462 aaPredicted RBP21.41■■□□□ 1.02
NELFE-209ENST00000488426 RAD54L2Q9Y4B4 1467 aa21.39■■□□□ 1.01
NELFE-209ENST00000488426 AQRO60306 1485 aaKnown RBP eCLIP21.38■■□□□ 1.011e-10■■■■□ 20.9
NELFE-209ENST00000488426 TARBP1Q13395 1621 aaKnown RBP21.37■■□□□ 1.01
NELFE-209ENST00000488426 OSCARQ8IYS5 282 aa21.37■■□□□ 1.01
NELFE-209ENST00000488426 CUX1P39880 1505 aa21.37■■□□□ 1.01
NELFE-209ENST00000488426 SOGA1O94964 1423 aa21.33■■□□□ 1
NELFE-209ENST00000488426 EIF4G3O43432 1585 aaKnown RBP21.31■■□□□ 1
NELFE-209ENST00000488426 FGD5Q6ZNL6 1462 aa21.31■■□□□ 1
NELFE-209ENST00000488426 TDRD9Q8NDG6 1382 aaKnown RBP21.31■■□□□ 1
NELFE-209ENST00000488426 TRIM41Q8WV44 630 aa21.2■□□□□ 0.98
NELFE-209ENST00000488426 FBLN2P98095 1184 aa21.18■□□□□ 0.98
NELFE-209ENST00000488426 CHD1O14646 1710 aa21.11■□□□□ 0.97
NELFE-209ENST00000488426 WRNQ14191 1432 aaPredicted RBP eCLIP21.1■□□□□ 0.97
NELFE-209ENST00000488426 SNAPC4Q5SXM2 1469 aa21.1■□□□□ 0.97
NELFE-209ENST00000488426 SYNJ1O43426 1573 aa21.09■□□□□ 0.97
NELFE-209ENST00000488426 WDR97A6NE52 1622 aa21.08■□□□□ 0.97
NELFE-209ENST00000488426 ABCA10Q8WWZ4 1543 aa21.06■□□□□ 0.96
NELFE-209ENST00000488426 GRIN2BQ13224 1484 aa21.04■□□□□ 0.96
NELFE-209ENST00000488426 GAPVD1Q14C86 1478 aa21.04■□□□□ 0.96
NELFE-209ENST00000488426 TOP2BQ02880 1626 aa21.04■□□□□ 0.96
NELFE-209ENST00000488426 CHMP7Q8WUX9 453 aaPredicted RBP21.03■□□□□ 0.96
NELFE-209ENST00000488426 BIVM-ERCC5R4GMW8 1640 aa21.02■□□□□ 0.96
NELFE-209ENST00000488426 RIMBP3CA6NJZ7 1639 aa21.02■□□□□ 0.95
NELFE-209ENST00000488426 RIMBP3BA6NNM3 1639 aa21.02■□□□□ 0.95
NELFE-209ENST00000488426 RIMBP3Q9UFD9 1639 aa21.02■□□□□ 0.95
NELFE-209ENST00000488426 ARHGEF11O15085 1522 aa20.99■□□□□ 0.95
NELFE-209ENST00000488426 MAGI1Q96QZ7 1491 aaPredicted RBP20.98■□□□□ 0.95
NELFE-209ENST00000488426 ABCA5Q8WWZ7 1642 aa20.98■□□□□ 0.95
NELFE-209ENST00000488426 PBRM1Q86U86 1689 aa20.96■□□□□ 0.95
NELFE-209ENST00000488426 SYNJ2O15056 1496 aa20.94■□□□□ 0.94
NELFE-209ENST00000488426 CYB5RLQ6IPT4 315 aa20.92■□□□□ 0.94
NELFE-209ENST00000488426 CLASP1Q7Z460 1538 aa20.87■□□□□ 0.93
NELFE-209ENST00000488426 ARAP1Q96P48 1450 aa20.83■□□□□ 0.93
NELFE-209ENST00000488426 ADAMTS12P58397 1594 aa20.79■□□□□ 0.92
NELFE-209ENST00000488426 GRIN2AQ12879 1464 aa20.79■□□□□ 0.92
NELFE-209ENST00000488426 EEA1Q15075 1411 aa20.78■□□□□ 0.92
NELFE-209ENST00000488426 FHAD1B1AJZ9 1412 aa20.77■□□□□ 0.91
NELFE-209ENST00000488426 ERICH3Q5RHP9 1530 aa20.76■□□□□ 0.91
NELFE-209ENST00000488426 FAM9AQ8IZU1 332 aaPredicted RBP20.74■□□□□ 0.91
NELFE-209ENST00000488426 CEP170Q5SW79 1584 aa20.74■□□□□ 0.91
NELFE-209ENST00000488426 NUP160Q12769 1436 aa20.72■□□□□ 0.91
NELFE-209ENST00000488426 IGF1RP08069 1367 aa20.7■□□□□ 0.9
NELFE-209ENST00000488426 ERCC6L2Q5T890 1561 aa20.69■□□□□ 0.9
NELFE-209ENST00000488426 LOC105371045A0A1W2PR82 267 aa20.68■□□□□ 0.9
NELFE-209ENST00000488426 KIF27Q86VH2 1401 aa20.65■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms