RNA–Protein interactions for RNA: ENST00000554439.5

PRPF39-207, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 5

Gene PRPF39, Length 2,982 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-207ENST00000554439 AEBP2Q6ZN18 517 aaPredicted RBP10.23□□□□□ -0.77
PRPF39-207ENST00000554439 CHIC1Q5VXU3 224 aa9.82□□□□□ -0.84
PRPF39-207ENST00000554439 SENP3Q9H4L4 574 aaPredicted RBP9.08□□□□□ -0.96
PRPF39-207ENST00000554439 POTEDQ86YR6 584 aa9.03□□□□□ -0.96
PRPF39-207ENST00000554439 PHF23Q9BUL5 403 aaPredicted RBP8.73□□□□□ -1.01
PRPF39-207ENST00000554439 FOXD1Q16676 465 aa8.37□□□□□ -1.07
PRPF39-207ENST00000554439 MSH5O43196 834 aa8.31□□□□□ -1.08
PRPF39-207ENST00000554439 PIAS4Q8N2W9 510 aaPredicted RBP7.68□□□□□ -1.18
PRPF39-207ENST00000554439 CACNB1Q02641 598 aaPredicted RBP7.38□□□□□ -1.23
PRPF39-207ENST00000554439 PPP6R1Q9UPN7 881 aa7.2□□□□□ -1.26
PRPF39-207ENST00000554439 ADRA2BP18089 450 aa7.16□□□□□ -1.26
PRPF39-207ENST00000554439 PLPPR3Q6T4P5 718 aa7.16□□□□□ -1.26
PRPF39-207ENST00000554439 DMRT2Q9Y5R5 561 aa7.07□□□□□ -1.28
PRPF39-207ENST00000554439 POTEHQ6S545 545 aa6.97□□□□□ -1.29
PRPF39-207ENST00000554439 RNF39Q9H2S5 420 aa6.91□□□□□ -1.3
PRPF39-207ENST00000554439 C1QBPQ07021 282 aaKnown RBP6.89□□□□□ -1.31
PRPF39-207ENST00000554439 SCAF1Q9H7N4 1312 aaKnown RBP6.89□□□□□ -1.31
PRPF39-207ENST00000554439 MAPK8IP2Q13387 824 aaPredicted RBP6.72□□□□□ -1.33
PRPF39-207ENST00000554439 DNAJC5BQ9UF47 199 aa6.72□□□□□ -1.33
PRPF39-207ENST00000554439 DCAF8L1A6NGE4 600 aa6.62□□□□□ -1.35
PRPF39-207ENST00000554439 HOXD11P31277 338 aaPredicted RBP6.58□□□□□ -1.36
PRPF39-207ENST00000554439 RNF216Q9NWF9 866 aaPredicted RBP6.36□□□□□ -1.39
PRPF39-207ENST00000554439 SP7Q8TDD2 431 aaPredicted RBP6.26□□□□□ -1.41
PRPF39-207ENST00000554439 CNKSR2Q8WXI2 1034 aa6.24□□□□□ -1.41
PRPF39-207ENST00000554439 DSG3P32926 999 aa6.21□□□□□ -1.41
PRPF39-207ENST00000554439 GRWD1Q9BQ67 446 aaKnown RBP eCLIP6.18□□□□□ -1.422e-6■■□□□ 11.5
PRPF39-207ENST00000554439 RBM42Q9BTD8 480 aaKnown RBP6.13□□□□□ -1.43
PRPF39-207ENST00000554439 PPP4R3CPQ6ZMV5 832 aa6.11□□□□□ -1.43
PRPF39-207ENST00000554439 CHRDL2Q6WN34 429 aa6.09□□□□□ -1.44
PRPF39-207ENST00000554439 CAPN15O75808 1086 aa6.06□□□□□ -1.44
PRPF39-207ENST00000554439 APLP2Q06481 763 aa6.05□□□□□ -1.44
PRPF39-207ENST00000554439 SPINK5Q9NQ38 1064 aaPredicted RBP5.94□□□□□ -1.46
PRPF39-207ENST00000554439 ZNF219Q9P2Y4 722 aaPredicted RBP5.93□□□□□ -1.46
PRPF39-207ENST00000554439 U3KPZ7 1027 aaPredicted RBP5.93□□□□□ -1.46
PRPF39-207ENST00000554439 PLSCR2Q9NRY7 297 aa5.9□□□□□ -1.46
PRPF39-207ENST00000554439 NCBP3Q53F19 620 aaKnown RBP5.85□□□□□ -1.47
PRPF39-207ENST00000554439 LHX8Q68G74 356 aa5.85□□□□□ -1.47
PRPF39-207ENST00000554439 HAX1O00165 279 aa5.83□□□□□ -1.48
PRPF39-207ENST00000554439 AKT1S1Q96B36 256 aa5.8□□□□□ -1.48
PRPF39-207ENST00000554439 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP5.79□□□□□ -1.48
PRPF39-207ENST00000554439 HNRNPUL2Q1KMD3 747 aaKnown RBP5.79□□□□□ -1.48
PRPF39-207ENST00000554439 PIP4P2Q8N4L2 257 aa5.78□□□□□ -1.48
PRPF39-207ENST00000554439 ABCB7O75027 752 aa5.75□□□□□ -1.49
PRPF39-207ENST00000554439 TRHP20396 242 aaPredicted RBP5.75□□□□□ -1.49
PRPF39-207ENST00000554439 PCDH10Q9P2E7 1040 aa5.75□□□□□ -1.49
PRPF39-207ENST00000554439 FXR2P51116 673 aaKnown RBP eCLIP5.72□□□□□ -1.49
PRPF39-207ENST00000554439 SAMD1Q6SPF0 538 aaPredicted RBP5.66□□□□□ -1.5
PRPF39-207ENST00000554439 REM2Q8IYK8 340 aaPredicted RBP5.63□□□□□ -1.51
PRPF39-207ENST00000554439 KCNA4P22459 653 aa5.63□□□□□ -1.51
PRPF39-207ENST00000554439 CLCN6P51797 869 aa5.61□□□□□ -1.51
PRPF39-207ENST00000554439 ZBTB12Q9Y330 459 aaPredicted RBP5.61□□□□□ -1.51
PRPF39-207ENST00000554439 EHMT2Q96KQ7 1210 aa5.59□□□□□ -1.51
PRPF39-207ENST00000554439 GABBR2O75899 941 aa5.57□□□□□ -1.52
PRPF39-207ENST00000554439 C19orf67A6NJJ6 358 aa5.57□□□□□ -1.52
PRPF39-207ENST00000554439 EVX2Q03828 476 aa5.57□□□□□ -1.52
PRPF39-207ENST00000554439 NPM3O75607 178 aaKnown RBP5.54□□□□□ -1.52
PRPF39-207ENST00000554439 PITPNM1O00562 1244 aa5.54□□□□□ -1.52
PRPF39-207ENST00000554439 POTEMA6NI47 508 aa5.49□□□□□ -1.53
PRPF39-207ENST00000554439 POLA2Q14181 598 aa5.48□□□□□ -1.53
PRPF39-207ENST00000554439 POTEGQ6S5H5 508 aa5.46□□□□□ -1.54
PRPF39-207ENST00000554439 SLC4A2P04920 1241 aa5.43□□□□□ -1.54
PRPF39-207ENST00000554439 CSRNP3Q8WYN3 585 aa5.43□□□□□ -1.54
PRPF39-207ENST00000554439 PRKAR2AP13861 404 aaKnown RBP5.4□□□□□ -1.54
PRPF39-207ENST00000554439 POTEIP0CG38 1075 aa5.37□□□□□ -1.55
PRPF39-207ENST00000554439 SLC4A1APQ9BWU0 796 aaKnown RBP5.36□□□□□ -1.55
PRPF39-207ENST00000554439 SPDYE1Q8NFV5 336 aaPredicted RBP5.33□□□□□ -1.56
PRPF39-207ENST00000554439 OTUD5Q96G74 571 aa5.32□□□□□ -1.56
PRPF39-207ENST00000554439 DCBLD2Q96PD2 775 aa5.32□□□□□ -1.56
PRPF39-207ENST00000554439 MAMSTRQ6ZN01 415 aa5.28□□□□□ -1.56
PRPF39-207ENST00000554439 OSCARQ8IYS5 282 aa5.28□□□□□ -1.56
PRPF39-207ENST00000554439 MYCNP04198 464 aaPredicted RBP5.28□□□□□ -1.56
PRPF39-207ENST00000554439 SPDYE2BA6NHP3 402 aa5.27□□□□□ -1.57
PRPF39-207ENST00000554439 SPDYE6P0CI01 402 aa5.27□□□□□ -1.57
PRPF39-207ENST00000554439 SPDYE2Q495Y8 402 aa5.27□□□□□ -1.57
PRPF39-207ENST00000554439 ZBTB22O15209 634 aa5.23□□□□□ -1.57
PRPF39-207ENST00000554439 CD44P16070 742 aaKnown RBP5.2□□□□□ -1.58
PRPF39-207ENST00000554439 ZNF579Q8NAF0 562 aaKnown RBP5.19□□□□□ -1.58
PRPF39-207ENST00000554439 CLEC11AQ9Y240 323 aa5.16□□□□□ -1.58
PRPF39-207ENST00000554439 CDAN1Q8IWY9 1227 aa5.12□□□□□ -1.59
PRPF39-207ENST00000554439 POTEB2H3BUK9 544 aa5.12□□□□□ -1.59
PRPF39-207ENST00000554439 SCUBE2Q9NQ36 999 aa5.11□□□□□ -1.59
PRPF39-207ENST00000554439 LCE2DQ5TA82 110 aaPredicted RBP5.1□□□□□ -1.59
PRPF39-207ENST00000554439 FAM163AQ96GL9 167 aaPredicted RBP5.1□□□□□ -1.59
PRPF39-207ENST00000554439 PRR29P0C7W0 189 aa5.1□□□□□ -1.59
PRPF39-207ENST00000554439 C7P10643 843 aa5.09□□□□□ -1.59
PRPF39-207ENST00000554439 SLC39A7Q92504 469 aa5.09□□□□□ -1.6
PRPF39-207ENST00000554439 FARP1Q9Y4F1 1045 aaPredicted RBP5.09□□□□□ -1.6
PRPF39-207ENST00000554439 FBLN2P98095 1184 aa5.08□□□□□ -1.6
PRPF39-207ENST00000554439 MMRN1Q13201 1228 aa5.07□□□□□ -1.6
PRPF39-207ENST00000554439 SSUH2Q9Y2M2 353 aa5.07□□□□□ -1.6
PRPF39-207ENST00000554439 CHADLQ6NUI6 762 aa5.07□□□□□ -1.6
PRPF39-207ENST00000554439 FOXD4L1Q9NU39 408 aa5.04□□□□□ -1.6
PRPF39-207ENST00000554439 ZRANB1Q9UGI0 708 aa5.02□□□□□ -1.61
PRPF39-207ENST00000554439 SPNS2Q8IVW8 549 aa5.02□□□□□ -1.61
PRPF39-207ENST00000554439 RTN4Q9NQC3 1192 aaKnown RBP5.01□□□□□ -1.61
PRPF39-207ENST00000554439 SLC24A1O60721 1099 aa5□□□□□ -1.61
PRPF39-207ENST00000554439 METRNQ9UJH8 293 aa5□□□□□ -1.61
PRPF39-207ENST00000554439 ASTLQ6HA08 431 aaPredicted RBP4.99□□□□□ -1.61
PRPF39-207ENST00000554439 ZNF692Q9BU19 519 aaPredicted RBP4.99□□□□□ -1.61
PRPF39-207ENST00000554439 GALR2O43603 387 aaPredicted RBP4.98□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms