RNA–Protein interactions for RNA: ENST00000376802.2

HLA-A-201, Transcript of major histocompatibility complex, class I, A, humanhuman

BASIC

Gene HLA-A, Length 1,334 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-A-201ENST00000376802 NISCHQ9Y2I1 1504 aa43.93■■■■■ 4.62
HLA-A-201ENST00000376802 CCDC180Q9P1Z9 1646 aa39.43■■■■□ 3.9
HLA-A-201ENST00000376802 ABCC9O60706 1549 aa39.41■■■■□ 3.9
HLA-A-201ENST00000376802 RB1CC1Q8TDY2 1594 aa37.5■■■■□ 3.59
HLA-A-201ENST00000376802 NACADO15069 1562 aa37.25■■■■□ 3.55
HLA-A-201ENST00000376802 DNAJC5BQ9UF47 199 aa37.05■■■■□ 3.52
HLA-A-201ENST00000376802 DCAF8L2P0C7V8 631 aa37.02■■■■□ 3.52
HLA-A-201ENST00000376802 UNC13AQ9UPW8 1703 aa36.76■■■■□ 3.48
HLA-A-201ENST00000376802 MYO15BQ96JP2 1530 aa36.76■■■■□ 3.47
HLA-A-201ENST00000376802 PABPN1Q86U42 306 aaKnown RBP eCLIP36.69■■■■□ 3.46
HLA-A-201ENST00000376802 BICRAQ9NZM4 1560 aa36.48■■■■□ 3.43
HLA-A-201ENST00000376802 ZCCHC6Q5VYS8 1495 aaKnown RBP36.4■■■■□ 3.42
HLA-A-201ENST00000376802 DCAF1Q9Y4B6 1507 aa36.29■■■■□ 3.4
HLA-A-201ENST00000376802 SCRIBQ14160 1630 aa35.91■■■■□ 3.34
HLA-A-201ENST00000376802 SHROOM4Q9ULL8 1493 aa35.9■■■■□ 3.34
HLA-A-201ENST00000376802 CC2D2AQ9P2K1 1620 aa35.63■■■■□ 3.29
HLA-A-201ENST00000376802 EIF4G1Q04637 1599 aaKnown RBP35.54■■■■□ 3.28
HLA-A-201ENST00000376802 CECR2Q9BXF3 1484 aa35.48■■■■□ 3.27
HLA-A-201ENST00000376802 NCAPD3P42695 1498 aa34.41■■■■□ 3.1
HLA-A-201ENST00000376802 ATAD2BQ9ULI0 1458 aa34.3■■■■□ 3.08
HLA-A-201ENST00000376802 SMARCA4P51532 1647 aa34.28■■■■□ 3.08
HLA-A-201ENST00000376802 SMARCA2P51531 1590 aa34.17■■■■□ 3.06
HLA-A-201ENST00000376802 HMGXB3Q12766 1538 aa34.14■■■■□ 3.06
HLA-A-201ENST00000376802 BAZ1AQ9NRL2 1556 aaPredicted RBP34.08■■■■□ 3.05
HLA-A-201ENST00000376802 PEG3Q9GZU2 1588 aa33.96■■■■□ 3.03
HLA-A-201ENST00000376802 ERCC6Q03468 1493 aa33.96■■■■□ 3.03
HLA-A-201ENST00000376802 DNAJC5Q9H3Z4 198 aa33.96■■■■□ 3.03
HLA-A-201ENST00000376802 CUX2O14529 1486 aa33.95■■■■□ 3.02
HLA-A-201ENST00000376802 BAZ1BQ9UIG0 1483 aaKnown RBP33.94■■■■□ 3.02
HLA-A-201ENST00000376802 NESP48681 1621 aa33.88■■■■□ 3.01
HLA-A-201ENST00000376802 MROH2BQ7Z745 1585 aa33.87■■■■□ 3.01
HLA-A-201ENST00000376802 LAMC3Q9Y6N6 1575 aa33.61■■■□□ 2.97
HLA-A-201ENST00000376802 THOC2Q8NI27 1593 aaKnown RBP33.53■■■□□ 2.96
HLA-A-201ENST00000376802 WIZO95785 1651 aa33.47■■■□□ 2.95
HLA-A-201ENST00000376802 KIF21AQ7Z4S6 1674 aa33.46■■■□□ 2.95
HLA-A-201ENST00000376802 PDS5BQ9NTI5 1447 aa33.39■■■□□ 2.94
HLA-A-201ENST00000376802 CADPSQ9ULU8 1353 aa33.34■■■□□ 2.93
HLA-A-201ENST00000376802 RSF1Q96T23 1441 aaPredicted RBP33.16■■■□□ 2.9
HLA-A-201ENST00000376802 MRC2Q9UBG0 1479 aa33.11■■■□□ 2.89
HLA-A-201ENST00000376802 WDR62O43379 1518 aa33.06■■■□□ 2.88
HLA-A-201ENST00000376802 TOP2AP11388 1531 aaKnown RBP33.01■■■□□ 2.87
HLA-A-201ENST00000376802 CFTRP13569 1480 aa32.98■■■□□ 2.87
HLA-A-201ENST00000376802 CEP164Q9UPV0 1460 aa32.97■■■□□ 2.87
HLA-A-201ENST00000376802 FANCD2Q9BXW9 1451 aa32.96■■■□□ 2.87
HLA-A-201ENST00000376802 URB2Q14146 1524 aaKnown RBP32.72■■■□□ 2.83
HLA-A-201ENST00000376802 PRDM2Q13029 1718 aa32.68■■■□□ 2.82
HLA-A-201ENST00000376802 CCDC88BA6NC98 1476 aa32.66■■■□□ 2.82
HLA-A-201ENST00000376802 TRIM41Q8WV44 630 aa32.41■■■□□ 2.78
HLA-A-201ENST00000376802 OSCARQ8IYS5 282 aa32.4■■■□□ 2.78
HLA-A-201ENST00000376802 TOPBP1Q92547 1522 aa32.35■■■□□ 2.77
HLA-A-201ENST00000376802 IFT140Q96RY7 1462 aa32.32■■■□□ 2.76
HLA-A-201ENST00000376802 ZNF608Q9ULD9 1512 aaPredicted RBP32.32■■■□□ 2.76
HLA-A-201ENST00000376802 ABCC8Q09428 1581 aa32.24■■■□□ 2.75
HLA-A-201ENST00000376802 DNMBPQ6XZF7 1577 aa32.23■■■□□ 2.75
HLA-A-201ENST00000376802 EIF4G3O43432 1585 aaKnown RBP32.13■■■□□ 2.73
HLA-A-201ENST00000376802 TARBP1Q13395 1621 aaKnown RBP32.1■■■□□ 2.73
HLA-A-201ENST00000376802 POLA1P09884 1462 aaPredicted RBP32.02■■■□□ 2.72
HLA-A-201ENST00000376802 AQRO60306 1485 aaKnown RBP eCLIP32.02■■■□□ 2.72
HLA-A-201ENST00000376802 RIMBP3CA6NJZ7 1639 aa32.01■■■□□ 2.72
HLA-A-201ENST00000376802 RIMBP3BA6NNM3 1639 aa32.01■■■□□ 2.72
HLA-A-201ENST00000376802 RIMBP3Q9UFD9 1639 aa32.01■■■□□ 2.72
HLA-A-201ENST00000376802 RAD54L2Q9Y4B4 1467 aa31.92■■■□□ 2.7
HLA-A-201ENST00000376802 CHD1O14646 1710 aa31.91■■■□□ 2.7
HLA-A-201ENST00000376802 ARHGEF11O15085 1522 aa31.89■■■□□ 2.7
HLA-A-201ENST00000376802 SOGA1O94964 1423 aa31.86■■■□□ 2.69
HLA-A-201ENST00000376802 FGD5Q6ZNL6 1462 aa31.82■■■□□ 2.68
HLA-A-201ENST00000376802 CUX1P39880 1505 aa31.81■■■□□ 2.68
HLA-A-201ENST00000376802 TDRD9Q8NDG6 1382 aaKnown RBP31.81■■■□□ 2.68
HLA-A-201ENST00000376802 FBLN2P98095 1184 aa31.75■■■□□ 2.67
HLA-A-201ENST00000376802 WDR97A6NE52 1622 aa31.72■■■□□ 2.67
HLA-A-201ENST00000376802 SNAPC4Q5SXM2 1469 aa31.66■■■□□ 2.66
HLA-A-201ENST00000376802 SUPT5HO00267 1087 aaKnown RBP31.64■■■□□ 2.66
HLA-A-201ENST00000376802 CYB5RLQ6IPT4 315 aa31.64■■■□□ 2.66
HLA-A-201ENST00000376802 ARAP1Q96P48 1450 aa31.58■■■□□ 2.65
HLA-A-201ENST00000376802 MAGI1Q96QZ7 1491 aaPredicted RBP31.58■■■□□ 2.65
HLA-A-201ENST00000376802 GRIN2BQ13224 1484 aa31.57■■■□□ 2.65
HLA-A-201ENST00000376802 CLASP1Q7Z460 1538 aa31.54■■■□□ 2.64
HLA-A-201ENST00000376802 CHMP7Q8WUX9 453 aaPredicted RBP31.51■■■□□ 2.64
HLA-A-201ENST00000376802 PBRM1Q86U86 1689 aa31.49■■■□□ 2.63
HLA-A-201ENST00000376802 SYNJ2O15056 1496 aa31.47■■■□□ 2.63
HLA-A-201ENST00000376802 GAPVD1Q14C86 1478 aa31.47■■■□□ 2.63
HLA-A-201ENST00000376802 ABCA10Q8WWZ4 1543 aa31.46■■■□□ 2.63
HLA-A-201ENST00000376802 SYNJ1O43426 1573 aa31.46■■■□□ 2.63
HLA-A-201ENST00000376802 ABCA5Q8WWZ7 1642 aa31.44■■■□□ 2.62
HLA-A-201ENST00000376802 WRNQ14191 1432 aaPredicted RBP eCLIP31.31■■■□□ 2.6
HLA-A-201ENST00000376802 BIVM-ERCC5R4GMW8 1640 aa31.31■■■□□ 2.6
HLA-A-201ENST00000376802 TOP2BQ02880 1626 aa31.3■■■□□ 2.6
HLA-A-201ENST00000376802 TRHP20396 242 aaPredicted RBP31.24■■■□□ 2.59
HLA-A-201ENST00000376802 GRIN2AQ12879 1464 aa31.18■■■□□ 2.58
HLA-A-201ENST00000376802 ADAMTS12P58397 1594 aa31.17■■■□□ 2.58
HLA-A-201ENST00000376802 CEP170Q5SW79 1584 aa31.1■■■□□ 2.57
HLA-A-201ENST00000376802 NUP160Q12769 1436 aa31.09■■■□□ 2.57
HLA-A-201ENST00000376802 ERCC6L2Q5T890 1561 aa31.07■■■□□ 2.56
HLA-A-201ENST00000376802 FHAD1B1AJZ9 1412 aa31.07■■■□□ 2.56
HLA-A-201ENST00000376802 ERICH3Q5RHP9 1530 aa31.06■■■□□ 2.56
HLA-A-201ENST00000376802 SHROOM2Q13796 1616 aa30.99■■■□□ 2.55
HLA-A-201ENST00000376802 PRG4Q92954 1404 aaPredicted RBP30.78■■■□□ 2.52
HLA-A-201ENST00000376802 JPH4Q96JJ6 628 aa30.76■■■□□ 2.52
HLA-A-201ENST00000376802 RUSC2Q8N2Y8 1516 aa30.74■■■□□ 2.51
HLA-A-201ENST00000376802 IGF1RP08069 1367 aa30.69■■■□□ 2.5
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms