RNA–Protein interactions for RNA: ENST00000554785.1

PRPF39-208, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 2,121 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-208ENST00000554785 AEBP2Q6ZN18 517 aaPredicted RBP10.54□□□□□ -0.72
PRPF39-208ENST00000554785 POTEDQ86YR6 584 aa10.38□□□□□ -0.75
PRPF39-208ENST00000554785 CHIC1Q5VXU3 224 aa9.94□□□□□ -0.82
PRPF39-208ENST00000554785 SENP3Q9H4L4 574 aaPredicted RBP9.28□□□□□ -0.92
PRPF39-208ENST00000554785 PHF23Q9BUL5 403 aaPredicted RBP8.95□□□□□ -0.98
PRPF39-208ENST00000554785 FOXD1Q16676 465 aa8.72□□□□□ -1.01
PRPF39-208ENST00000554785 MSH5O43196 834 aa8.69□□□□□ -1.02
PRPF39-208ENST00000554785 CACNB1Q02641 598 aaPredicted RBP8.14□□□□□ -1.11
PRPF39-208ENST00000554785 POTEHQ6S545 545 aa7.92□□□□□ -1.14
PRPF39-208ENST00000554785 PIAS4Q8N2W9 510 aaPredicted RBP7.87□□□□□ -1.15
PRPF39-208ENST00000554785 PLPPR3Q6T4P5 718 aa7.4□□□□□ -1.23
PRPF39-208ENST00000554785 RNF39Q9H2S5 420 aa7.26□□□□□ -1.25
PRPF39-208ENST00000554785 PPP6R1Q9UPN7 881 aa7.22□□□□□ -1.25
PRPF39-208ENST00000554785 DMRT2Q9Y5R5 561 aa7.16□□□□□ -1.26
PRPF39-208ENST00000554785 ADRA2BP18089 450 aa7.15□□□□□ -1.27
PRPF39-208ENST00000554785 C1QBPQ07021 282 aaKnown RBP7.14□□□□□ -1.27
PRPF39-208ENST00000554785 PLSCR2Q9NRY7 297 aa7.01□□□□□ -1.29
PRPF39-208ENST00000554785 MAPK8IP2Q13387 824 aaPredicted RBP6.91□□□□□ -1.3
PRPF39-208ENST00000554785 SP7Q8TDD2 431 aaPredicted RBP6.89□□□□□ -1.31
PRPF39-208ENST00000554785 DCAF8L1A6NGE4 600 aa6.89□□□□□ -1.31
PRPF39-208ENST00000554785 SCAF1Q9H7N4 1312 aaKnown RBP6.78□□□□□ -1.32
PRPF39-208ENST00000554785 DNAJC5BQ9UF47 199 aa6.54□□□□□ -1.36
PRPF39-208ENST00000554785 CHRDL2Q6WN34 429 aa6.47□□□□□ -1.37
PRPF39-208ENST00000554785 LHX8Q68G74 356 aa6.46□□□□□ -1.38
PRPF39-208ENST00000554785 HOXD11P31277 338 aaPredicted RBP6.45□□□□□ -1.38
PRPF39-208ENST00000554785 PPP4R3CPQ6ZMV5 832 aa6.4□□□□□ -1.38
PRPF39-208ENST00000554785 DSG3P32926 999 aa6.4□□□□□ -1.39
PRPF39-208ENST00000554785 CNKSR2Q8WXI2 1034 aa6.38□□□□□ -1.39
PRPF39-208ENST00000554785 RNF216Q9NWF9 866 aaPredicted RBP6.36□□□□□ -1.39
PRPF39-208ENST00000554785 HAX1O00165 279 aa6.28□□□□□ -1.4
PRPF39-208ENST00000554785 NCBP3Q53F19 620 aaKnown RBP6.24□□□□□ -1.41
PRPF39-208ENST00000554785 RBM42Q9BTD8 480 aaKnown RBP6.21□□□□□ -1.42
PRPF39-208ENST00000554785 PCDH10Q9P2E7 1040 aa6.2□□□□□ -1.42
PRPF39-208ENST00000554785 CAPN15O75808 1086 aa6.17□□□□□ -1.42
PRPF39-208ENST00000554785 GRWD1Q9BQ67 446 aaKnown RBP eCLIP6.14□□□□□ -1.432e-7■■□□□ 12.5
PRPF39-208ENST00000554785 POTEMA6NI47 508 aa6.11□□□□□ -1.43
PRPF39-208ENST00000554785 KCNA4P22459 653 aa6.08□□□□□ -1.44
PRPF39-208ENST00000554785 NPM3O75607 178 aaKnown RBP6.08□□□□□ -1.44
PRPF39-208ENST00000554785 SPINK5Q9NQ38 1064 aaPredicted RBP6.07□□□□□ -1.44
PRPF39-208ENST00000554785 POTEGQ6S5H5 508 aa6.06□□□□□ -1.44
PRPF39-208ENST00000554785 PIP4P2Q8N4L2 257 aa6.06□□□□□ -1.44
PRPF39-208ENST00000554785 EVX2Q03828 476 aa6.04□□□□□ -1.44
PRPF39-208ENST00000554785 APLP2Q06481 763 aa5.98□□□□□ -1.45
PRPF39-208ENST00000554785 GABBR2O75899 941 aa5.91□□□□□ -1.46
PRPF39-208ENST00000554785 U3KPZ7 1027 aaPredicted RBP5.9□□□□□ -1.46
PRPF39-208ENST00000554785 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP5.89□□□□□ -1.47
PRPF39-208ENST00000554785 HNRNPUL2Q1KMD3 747 aaKnown RBP5.89□□□□□ -1.47
PRPF39-208ENST00000554785 ABCB7O75027 752 aa5.87□□□□□ -1.47
PRPF39-208ENST00000554785 FXR2P51116 673 aaKnown RBP eCLIP5.86□□□□□ -1.47
PRPF39-208ENST00000554785 ZNF219Q9P2Y4 722 aaPredicted RBP5.84□□□□□ -1.47
PRPF39-208ENST00000554785 SLC4A2P04920 1241 aa5.8□□□□□ -1.48
PRPF39-208ENST00000554785 AKT1S1Q96B36 256 aa5.8□□□□□ -1.48
PRPF39-208ENST00000554785 SAMD1Q6SPF0 538 aaPredicted RBP5.8□□□□□ -1.48
PRPF39-208ENST00000554785 TRHP20396 242 aaPredicted RBP5.77□□□□□ -1.49
PRPF39-208ENST00000554785 OTUD5Q96G74 571 aa5.75□□□□□ -1.49
PRPF39-208ENST00000554785 POTEIP0CG38 1075 aa5.74□□□□□ -1.49
PRPF39-208ENST00000554785 C19orf67A6NJJ6 358 aa5.72□□□□□ -1.49
PRPF39-208ENST00000554785 SLC4A1APQ9BWU0 796 aaKnown RBP5.72□□□□□ -1.49
PRPF39-208ENST00000554785 REM2Q8IYK8 340 aaPredicted RBP5.71□□□□□ -1.5
PRPF39-208ENST00000554785 PITPNM1O00562 1244 aa5.64□□□□□ -1.51
PRPF39-208ENST00000554785 MYCNP04198 464 aaPredicted RBP5.64□□□□□ -1.51
PRPF39-208ENST00000554785 ZBTB22O15209 634 aa5.63□□□□□ -1.51
PRPF39-208ENST00000554785 ZBTB12Q9Y330 459 aaPredicted RBP5.62□□□□□ -1.51
PRPF39-208ENST00000554785 FOXD4L1Q9NU39 408 aa5.59□□□□□ -1.52
PRPF39-208ENST00000554785 MMRN1Q13201 1228 aa5.57□□□□□ -1.52
PRPF39-208ENST00000554785 CDAN1Q8IWY9 1227 aa5.57□□□□□ -1.52
PRPF39-208ENST00000554785 POLA2Q14181 598 aa5.56□□□□□ -1.52
PRPF39-208ENST00000554785 CLCN6P51797 869 aa5.54□□□□□ -1.52
PRPF39-208ENST00000554785 LCE2DQ5TA82 110 aaPredicted RBP5.54□□□□□ -1.52
PRPF39-208ENST00000554785 FAM163AQ96GL9 167 aaPredicted RBP5.53□□□□□ -1.52
PRPF39-208ENST00000554785 DCBLD2Q96PD2 775 aa5.53□□□□□ -1.52
PRPF39-208ENST00000554785 ATF5Q9Y2D1 282 aaPredicted RBP5.53□□□□□ -1.52
PRPF39-208ENST00000554785 PRKAR2AP13861 404 aaKnown RBP5.5□□□□□ -1.53
PRPF39-208ENST00000554785 POTEB2H3BUK9 544 aa5.49□□□□□ -1.53
PRPF39-208ENST00000554785 SPNS2Q8IVW8 549 aa5.45□□□□□ -1.54
PRPF39-208ENST00000554785 CSRNP3Q8WYN3 585 aa5.45□□□□□ -1.54
PRPF39-208ENST00000554785 EHMT2Q96KQ7 1210 aa5.43□□□□□ -1.54
PRPF39-208ENST00000554785 ATXN8OSP0DMR3 200 aa5.42□□□□□ -1.54
PRPF39-208ENST00000554785 MAMSTRQ6ZN01 415 aa5.39□□□□□ -1.55
PRPF39-208ENST00000554785 SPDYE2BA6NHP3 402 aa5.36□□□□□ -1.55
PRPF39-208ENST00000554785 SPDYE6P0CI01 402 aa5.36□□□□□ -1.55
PRPF39-208ENST00000554785 SPDYE2Q495Y8 402 aa5.36□□□□□ -1.55
PRPF39-208ENST00000554785 FBLN2P98095 1184 aa5.35□□□□□ -1.55
PRPF39-208ENST00000554785 OSCARQ8IYS5 282 aa5.35□□□□□ -1.55
PRPF39-208ENST00000554785 SPDYE1Q8NFV5 336 aaPredicted RBP5.3□□□□□ -1.56
PRPF39-208ENST00000554785 CD44P16070 742 aaKnown RBP5.26□□□□□ -1.57
PRPF39-208ENST00000554785 MKRN4PQ13434 485 aaPredicted RBP5.26□□□□□ -1.57
PRPF39-208ENST00000554785 SCUBE2Q9NQ36 999 aa5.23□□□□□ -1.57
PRPF39-208ENST00000554785 POTEJP0CG39 1038 aa5.23□□□□□ -1.57
PRPF39-208ENST00000554785 SSUH2Q9Y2M2 353 aa5.22□□□□□ -1.57
PRPF39-208ENST00000554785 ZNF692Q9BU19 519 aaPredicted RBP5.21□□□□□ -1.58
PRPF39-208ENST00000554785 CLEC11AQ9Y240 323 aa5.19□□□□□ -1.58
PRPF39-208ENST00000554785 PRR29P0C7W0 189 aa5.14□□□□□ -1.59
PRPF39-208ENST00000554785 CHADLQ6NUI6 762 aa5.14□□□□□ -1.59
PRPF39-208ENST00000554785 ZNF579Q8NAF0 562 aaKnown RBP5.14□□□□□ -1.59
PRPF39-208ENST00000554785 METRNQ9UJH8 293 aa5.12□□□□□ -1.59
PRPF39-208ENST00000554785 C7P10643 843 aa5.12□□□□□ -1.59
PRPF39-208ENST00000554785 PELP1Q8IZL8 1130 aaKnown RBP5.11□□□□□ -1.59
PRPF39-208ENST00000554785 GALR2O43603 387 aaPredicted RBP5.1□□□□□ -1.59
PRPF39-208ENST00000554785 PABPN1Q86U42 306 aaKnown RBP eCLIP5.09□□□□□ -1.592e-9■■■□□ 16.8
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms