RNA–Protein interactions for RNA: ENST00000424478.5

PRPF39-202, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 3,174 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-202ENST00000424478 NISCHQ9Y2I1 1504 aa31.37■■■□□ 2.61
PRPF39-202ENST00000424478 CCDC180Q9P1Z9 1646 aa27.45■■□□□ 1.98
PRPF39-202ENST00000424478 ABCC9O60706 1549 aa26.7■■□□□ 1.87
PRPF39-202ENST00000424478 DCAF8L2P0C7V8 631 aa26.41■■□□□ 1.82
PRPF39-202ENST00000424478 ZCCHC6Q5VYS8 1495 aaKnown RBP26.24■■□□□ 1.79
PRPF39-202ENST00000424478 DCAF1Q9Y4B6 1507 aa25.75■■□□□ 1.71
PRPF39-202ENST00000424478 NACADO15069 1562 aa25.69■■□□□ 1.7
PRPF39-202ENST00000424478 RB1CC1Q8TDY2 1594 aa25.64■■□□□ 1.69
PRPF39-202ENST00000424478 SHROOM4Q9ULL8 1493 aa25.61■■□□□ 1.69
PRPF39-202ENST00000424478 MYO15BQ96JP2 1530 aa25.57■■□□□ 1.68
PRPF39-202ENST00000424478 SCRIBQ14160 1630 aa25.45■■□□□ 1.66
PRPF39-202ENST00000424478 UNC13AQ9UPW8 1703 aa25.24■■□□□ 1.63
PRPF39-202ENST00000424478 PABPN1Q86U42 306 aaKnown RBP eCLIP25.17■■□□□ 1.622e-9■■■□□ 16.8
PRPF39-202ENST00000424478 BICRAQ9NZM4 1560 aa24.97■■□□□ 1.59
PRPF39-202ENST00000424478 CECR2Q9BXF3 1484 aa24.57■■□□□ 1.52
PRPF39-202ENST00000424478 SUPT5HO00267 1087 aaKnown RBP24.36■■□□□ 1.49
PRPF39-202ENST00000424478 MROH2BQ7Z745 1585 aa24.32■■□□□ 1.48
PRPF39-202ENST00000424478 EIF4G1Q04637 1599 aaKnown RBP24.25■■□□□ 1.47
PRPF39-202ENST00000424478 SMARCA4P51532 1647 aa24.23■■□□□ 1.47
PRPF39-202ENST00000424478 BAZ1AQ9NRL2 1556 aaPredicted RBP24.22■■□□□ 1.47
PRPF39-202ENST00000424478 RSF1Q96T23 1441 aaPredicted RBP24.21■■□□□ 1.47
PRPF39-202ENST00000424478 WIZO95785 1651 aa24.13■■□□□ 1.45
PRPF39-202ENST00000424478 DNAJC5BQ9UF47 199 aa24.07■■□□□ 1.44
PRPF39-202ENST00000424478 CC2D2AQ9P2K1 1620 aa24.05■■□□□ 1.44
PRPF39-202ENST00000424478 ATAD2BQ9ULI0 1458 aa23.96■■□□□ 1.43
PRPF39-202ENST00000424478 SMARCA2P51531 1590 aa23.84■■□□□ 1.41
PRPF39-202ENST00000424478 PEG3Q9GZU2 1588 aa23.83■■□□□ 1.41
PRPF39-202ENST00000424478 BAZ1BQ9UIG0 1483 aaKnown RBP23.81■■□□□ 1.4
PRPF39-202ENST00000424478 NCAPD3P42695 1498 aa23.75■■□□□ 1.39
PRPF39-202ENST00000424478 TOP2AP11388 1531 aaKnown RBP23.72■■□□□ 1.39
PRPF39-202ENST00000424478 HMGXB3Q12766 1538 aa23.65■■□□□ 1.38
PRPF39-202ENST00000424478 CCDC88BA6NC98 1476 aa23.56■■□□□ 1.36
PRPF39-202ENST00000424478 NESP48681 1621 aa23.31■■□□□ 1.32
PRPF39-202ENST00000424478 CADPSQ9ULU8 1353 aa23.17■■□□□ 1.3
PRPF39-202ENST00000424478 CFTRP13569 1480 aa23.13■■□□□ 1.29
PRPF39-202ENST00000424478 ABCC8Q09428 1581 aa23.03■■□□□ 1.28
PRPF39-202ENST00000424478 LAMC3Q9Y6N6 1575 aa23.02■■□□□ 1.28
PRPF39-202ENST00000424478 FANCD2Q9BXW9 1451 aa22.96■■□□□ 1.27
PRPF39-202ENST00000424478 KIF21AQ7Z4S6 1674 aa22.94■■□□□ 1.26
PRPF39-202ENST00000424478 CHIC1Q5VXU3 224 aa22.93■■□□□ 1.26
PRPF39-202ENST00000424478 PRDM2Q13029 1718 aa22.93■■□□□ 1.26
PRPF39-202ENST00000424478 PDS5BQ9NTI5 1447 aa22.88■■□□□ 1.25
PRPF39-202ENST00000424478 ERCC6Q03468 1493 aa22.87■■□□□ 1.25
PRPF39-202ENST00000424478 CEP164Q9UPV0 1460 aa22.84■■□□□ 1.25
PRPF39-202ENST00000424478 TRIM41Q8WV44 630 aa22.8■■□□□ 1.24
PRPF39-202ENST00000424478 WRNQ14191 1432 aaPredicted RBP eCLIP22.79■■□□□ 1.24
PRPF39-202ENST00000424478 SYNJ1O43426 1573 aa22.78■■□□□ 1.24
PRPF39-202ENST00000424478 CUX1P39880 1505 aa22.75■■□□□ 1.23
PRPF39-202ENST00000424478 URB2Q14146 1524 aaKnown RBP22.73■■□□□ 1.23
PRPF39-202ENST00000424478 TOPBP1Q92547 1522 aa22.65■■□□□ 1.22
PRPF39-202ENST00000424478 MRC2Q9UBG0 1479 aa22.65■■□□□ 1.22
PRPF39-202ENST00000424478 THOC2Q8NI27 1593 aaKnown RBP22.61■■□□□ 1.21
PRPF39-202ENST00000424478 TOP2BQ02880 1626 aa22.61■■□□□ 1.21
PRPF39-202ENST00000424478 DNMBPQ6XZF7 1577 aa22.6■■□□□ 1.21
PRPF39-202ENST00000424478 FAM9AQ8IZU1 332 aaPredicted RBP22.58■■□□□ 1.21
PRPF39-202ENST00000424478 FGD5Q6ZNL6 1462 aa22.58■■□□□ 1.21
PRPF39-202ENST00000424478 BIVM-ERCC5R4GMW8 1640 aa22.57■■□□□ 1.2
PRPF39-202ENST00000424478 RAD54L2Q9Y4B4 1467 aa22.55■■□□□ 1.2
PRPF39-202ENST00000424478 POLA1P09884 1462 aaPredicted RBP22.52■■□□□ 1.2
PRPF39-202ENST00000424478 WDR62O43379 1518 aa22.52■■□□□ 1.2
PRPF39-202ENST00000424478 SOGA1O94964 1423 aa22.47■■□□□ 1.19
PRPF39-202ENST00000424478 RUSC2Q8N2Y8 1516 aa22.47■■□□□ 1.19
PRPF39-202ENST00000424478 EHMT2Q96KQ7 1210 aa22.45■■□□□ 1.18
PRPF39-202ENST00000424478 CUX2O14529 1486 aa22.44■■□□□ 1.18
PRPF39-202ENST00000424478 TDRD9Q8NDG6 1382 aaKnown RBP22.38■■□□□ 1.17
PRPF39-202ENST00000424478 ZNF608Q9ULD9 1512 aaPredicted RBP22.35■■□□□ 1.17
PRPF39-202ENST00000424478 TARBP1Q13395 1621 aaKnown RBP22.33■■□□□ 1.17
PRPF39-202ENST00000424478 AQRO60306 1485 aaKnown RBP eCLIP22.3■■□□□ 1.162e-7■■■■□ 20.5
PRPF39-202ENST00000424478 ABCA10Q8WWZ4 1543 aa22.26■■□□□ 1.15
PRPF39-202ENST00000424478 IFT140Q96RY7 1462 aa22.26■■□□□ 1.15
PRPF39-202ENST00000424478 WDR97A6NE52 1622 aa22.25■■□□□ 1.15
PRPF39-202ENST00000424478 KIF27Q86VH2 1401 aa22.22■■□□□ 1.15
PRPF39-202ENST00000424478 LOC105371045A0A1W2PR82 267 aa22.2■■□□□ 1.14
PRPF39-202ENST00000424478 EIF4G3O43432 1585 aaKnown RBP22.17■■□□□ 1.14
PRPF39-202ENST00000424478 GAPVD1Q14C86 1478 aa22.17■■□□□ 1.14
PRPF39-202ENST00000424478 CSRNP3Q8WYN3 585 aa22.16■■□□□ 1.14
PRPF39-202ENST00000424478 ABCA5Q8WWZ7 1642 aa22.15■■□□□ 1.14
PRPF39-202ENST00000424478 IGF1RP08069 1367 aa22.12■■□□□ 1.13
PRPF39-202ENST00000424478 PBRM1Q86U86 1689 aa22.08■■□□□ 1.13
PRPF39-202ENST00000424478 EEA1Q15075 1411 aa22.04■■□□□ 1.12
PRPF39-202ENST00000424478 FBLN2P98095 1184 aa22.04■■□□□ 1.12
PRPF39-202ENST00000424478 SNAPC4Q5SXM2 1469 aa22.03■■□□□ 1.12
PRPF39-202ENST00000424478 GRIN2BQ13224 1484 aa22.03■■□□□ 1.12
PRPF39-202ENST00000424478 RAPGEF2Q9Y4G8 1499 aa22■■□□□ 1.11
PRPF39-202ENST00000424478 CARMIL1Q5VZK9 1371 aa22■■□□□ 1.11
PRPF39-202ENST00000424478 RANGAP1P46060 587 aaPredicted RBP21.97■■□□□ 1.11
PRPF39-202ENST00000424478 ERICH3Q5RHP9 1530 aa21.96■■□□□ 1.11
PRPF39-202ENST00000424478 UBTFP17480 764 aaKnown RBP21.95■■□□□ 1.1
PRPF39-202ENST00000424478 PRXQ9BXM0 1461 aa21.94■■□□□ 1.1
PRPF39-202ENST00000424478 ADAMTS12P58397 1594 aa21.91■■□□□ 1.1
PRPF39-202ENST00000424478 CHMP7Q8WUX9 453 aaPredicted RBP21.9■■□□□ 1.1
PRPF39-202ENST00000424478 CUL7Q14999 1698 aa21.88■■□□□ 1.09
PRPF39-202ENST00000424478 KIF21BO75037 1637 aa21.87■■□□□ 1.09
PRPF39-202ENST00000424478 FHAD1B1AJZ9 1412 aa21.86■■□□□ 1.09
PRPF39-202ENST00000424478 GOLGA3Q08378 1498 aa21.85■■□□□ 1.09
PRPF39-202ENST00000424478 MAGI1Q96QZ7 1491 aaPredicted RBP21.85■■□□□ 1.09
PRPF39-202ENST00000424478 CHD1O14646 1710 aa21.82■■□□□ 1.08
PRPF39-202ENST00000424478 SYNJ2O15056 1496 aa21.81■■□□□ 1.08
PRPF39-202ENST00000424478 GRIN2AQ12879 1464 aa21.79■■□□□ 1.08
PRPF39-202ENST00000424478 CEP170Q5SW79 1584 aa21.71■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms