RNA–Protein interactions for RNA: ENST00000477626.5

PRPF39-203, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 3,507 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-203ENST00000477626 NISCHQ9Y2I1 1504 aa28.55■■■□□ 2.16
PRPF39-203ENST00000477626 CCDC180Q9P1Z9 1646 aa25.12■■□□□ 1.61
PRPF39-203ENST00000477626 ZCCHC6Q5VYS8 1495 aaKnown RBP24.1■■□□□ 1.45
PRPF39-203ENST00000477626 DCAF1Q9Y4B6 1507 aa23.84■■□□□ 1.41
PRPF39-203ENST00000477626 MYO15BQ96JP2 1530 aa23.56■■□□□ 1.36
PRPF39-203ENST00000477626 NACADO15069 1562 aa23.16■■□□□ 1.3
PRPF39-203ENST00000477626 ABCC9O60706 1549 aa23.08■■□□□ 1.29
PRPF39-203ENST00000477626 UNC13AQ9UPW8 1703 aa22.88■■□□□ 1.25
PRPF39-203ENST00000477626 RB1CC1Q8TDY2 1594 aa22.84■■□□□ 1.25
PRPF39-203ENST00000477626 SCRIBQ14160 1630 aa22.74■■□□□ 1.23
PRPF39-203ENST00000477626 SHROOM4Q9ULL8 1493 aa22.67■■□□□ 1.22
PRPF39-203ENST00000477626 BICRAQ9NZM4 1560 aa22.48■■□□□ 1.19
PRPF39-203ENST00000477626 DCAF8L2P0C7V8 631 aa22.47■■□□□ 1.19
PRPF39-203ENST00000477626 CECR2Q9BXF3 1484 aa22.1■■□□□ 1.13
PRPF39-203ENST00000477626 RSF1Q96T23 1441 aaPredicted RBP22.08■■□□□ 1.13
PRPF39-203ENST00000477626 MROH2BQ7Z745 1585 aa22.04■■□□□ 1.12
PRPF39-203ENST00000477626 SMARCA4P51532 1647 aa22■■□□□ 1.11
PRPF39-203ENST00000477626 BAZ1AQ9NRL2 1556 aaPredicted RBP21.97■■□□□ 1.11
PRPF39-203ENST00000477626 PEG3Q9GZU2 1588 aa21.95■■□□□ 1.1
PRPF39-203ENST00000477626 WIZO95785 1651 aa21.91■■□□□ 1.1
PRPF39-203ENST00000477626 EIF4G1Q04637 1599 aaKnown RBP21.74■■□□□ 1.07
PRPF39-203ENST00000477626 TOP2AP11388 1531 aaKnown RBP21.68■■□□□ 1.06
PRPF39-203ENST00000477626 SUPT5HO00267 1087 aaKnown RBP21.65■■□□□ 1.06
PRPF39-203ENST00000477626 PABPN1Q86U42 306 aaKnown RBP eCLIP21.57■■□□□ 1.042e-9■■■□□ 16.8
PRPF39-203ENST00000477626 SMARCA2P51531 1590 aa21.54■■□□□ 1.04
PRPF39-203ENST00000477626 ATAD2BQ9ULI0 1458 aa21.49■■□□□ 1.03
PRPF39-203ENST00000477626 HMGXB3Q12766 1538 aa21.43■■□□□ 1.02
PRPF39-203ENST00000477626 CCDC88BA6NC98 1476 aa21.34■■□□□ 1.01
PRPF39-203ENST00000477626 NCAPD3P42695 1498 aa21.34■■□□□ 1.01
PRPF39-203ENST00000477626 CC2D2AQ9P2K1 1620 aa21.22■□□□□ 0.99
PRPF39-203ENST00000477626 BAZ1BQ9UIG0 1483 aaKnown RBP21.19■□□□□ 0.98
PRPF39-203ENST00000477626 PRDM2Q13029 1718 aa21.16■□□□□ 0.98
PRPF39-203ENST00000477626 CHIC1Q5VXU3 224 aa21.15■□□□□ 0.98
PRPF39-203ENST00000477626 ABCC8Q09428 1581 aa20.88■□□□□ 0.93
PRPF39-203ENST00000477626 CFTRP13569 1480 aa20.88■□□□□ 0.93
PRPF39-203ENST00000477626 BIVM-ERCC5R4GMW8 1640 aa20.86■□□□□ 0.93
PRPF39-203ENST00000477626 SYNJ1O43426 1573 aa20.82■□□□□ 0.92
PRPF39-203ENST00000477626 TOP2BQ02880 1626 aa20.76■□□□□ 0.91
PRPF39-203ENST00000477626 CUX1P39880 1505 aa20.63■□□□□ 0.89
PRPF39-203ENST00000477626 LAMC3Q9Y6N6 1575 aa20.62■□□□□ 0.89
PRPF39-203ENST00000477626 WRNQ14191 1432 aaPredicted RBP eCLIP20.59■□□□□ 0.89
PRPF39-203ENST00000477626 CADPSQ9ULU8 1353 aa20.59■□□□□ 0.89
PRPF39-203ENST00000477626 DNAJC5BQ9UF47 199 aa20.49■□□□□ 0.87
PRPF39-203ENST00000477626 KIF21AQ7Z4S6 1674 aa20.49■□□□□ 0.87
PRPF39-203ENST00000477626 WDR97A6NE52 1622 aa20.48■□□□□ 0.87
PRPF39-203ENST00000477626 NESP48681 1621 aa20.47■□□□□ 0.87
PRPF39-203ENST00000477626 TRIM41Q8WV44 630 aa20.43■□□□□ 0.86
PRPF39-203ENST00000477626 RUSC2Q8N2Y8 1516 aa20.43■□□□□ 0.86
PRPF39-203ENST00000477626 SOGA1O94964 1423 aa20.42■□□□□ 0.86
PRPF39-203ENST00000477626 DNMBPQ6XZF7 1577 aa20.4■□□□□ 0.86
PRPF39-203ENST00000477626 FANCD2Q9BXW9 1451 aa20.39■□□□□ 0.85
PRPF39-203ENST00000477626 KIF21BO75037 1637 aa20.39■□□□□ 0.85
PRPF39-203ENST00000477626 EEA1Q15075 1411 aa20.36■□□□□ 0.85
PRPF39-203ENST00000477626 URB2Q14146 1524 aaKnown RBP20.32■□□□□ 0.84
PRPF39-203ENST00000477626 TOPBP1Q92547 1522 aa20.29■□□□□ 0.84
PRPF39-203ENST00000477626 TARBP1Q13395 1621 aaKnown RBP20.24■□□□□ 0.83
PRPF39-203ENST00000477626 FGD5Q6ZNL6 1462 aa20.23■□□□□ 0.83
PRPF39-203ENST00000477626 CEP164Q9UPV0 1460 aa20.21■□□□□ 0.83
PRPF39-203ENST00000477626 THOC2Q8NI27 1593 aaKnown RBP20.21■□□□□ 0.83
PRPF39-203ENST00000477626 ABCA5Q8WWZ7 1642 aa20.21■□□□□ 0.83
PRPF39-203ENST00000477626 PRXQ9BXM0 1461 aa20.19■□□□□ 0.82
PRPF39-203ENST00000477626 ERICH3Q5RHP9 1530 aa20.19■□□□□ 0.82
PRPF39-203ENST00000477626 WDR62O43379 1518 aa20.18■□□□□ 0.82
PRPF39-203ENST00000477626 ABCA10Q8WWZ4 1543 aa20.18■□□□□ 0.82
PRPF39-203ENST00000477626 POLA1P09884 1462 aaPredicted RBP20.18■□□□□ 0.82
PRPF39-203ENST00000477626 LOC105371045A0A1W2PR82 267 aa20.18■□□□□ 0.82
PRPF39-203ENST00000477626 PDS5BQ9NTI5 1447 aa20.13■□□□□ 0.81
PRPF39-203ENST00000477626 GOLGA3Q08378 1498 aa20.05■□□□□ 0.8
PRPF39-203ENST00000477626 MRC2Q9UBG0 1479 aa20.05■□□□□ 0.8
PRPF39-203ENST00000477626 CUX2O14529 1486 aa20.04■□□□□ 0.8
PRPF39-203ENST00000477626 RAPGEF2Q9Y4G8 1499 aa20.04■□□□□ 0.8
PRPF39-203ENST00000477626 TNIKQ9UKE5 1360 aa20.02■□□□□ 0.8
PRPF39-203ENST00000477626 PBRM1Q86U86 1689 aa20.01■□□□□ 0.79
PRPF39-203ENST00000477626 CUL7Q14999 1698 aa20.01■□□□□ 0.79
PRPF39-203ENST00000477626 RAD54L2Q9Y4B4 1467 aa20.01■□□□□ 0.79
PRPF39-203ENST00000477626 CSRNP3Q8WYN3 585 aa19.99■□□□□ 0.79
PRPF39-203ENST00000477626 KIF27Q86VH2 1401 aa19.99■□□□□ 0.79
PRPF39-203ENST00000477626 IGF1RP08069 1367 aa19.96■□□□□ 0.79
PRPF39-203ENST00000477626 CTTNBP2Q8WZ74 1663 aa19.89■□□□□ 0.77
PRPF39-203ENST00000477626 CEP162Q5TB80 1403 aa19.88■□□□□ 0.77
PRPF39-203ENST00000477626 FAM9AQ8IZU1 332 aaPredicted RBP19.88■□□□□ 0.77
PRPF39-203ENST00000477626 ADAMTS12P58397 1594 aa19.83■□□□□ 0.76
PRPF39-203ENST00000477626 EIF4G3O43432 1585 aaKnown RBP19.81■□□□□ 0.76
PRPF39-203ENST00000477626 IFT140Q96RY7 1462 aa19.8■□□□□ 0.76
PRPF39-203ENST00000477626 GAPVD1Q14C86 1478 aa19.76■□□□□ 0.75
PRPF39-203ENST00000477626 ARAP1Q96P48 1450 aa19.76■□□□□ 0.75
PRPF39-203ENST00000477626 ZNF608Q9ULD9 1512 aaPredicted RBP19.73■□□□□ 0.75
PRPF39-203ENST00000477626 SAMD9Q5K651 1589 aa19.72■□□□□ 0.75
PRPF39-203ENST00000477626 CARMIL1Q5VZK9 1371 aa19.69■□□□□ 0.74
PRPF39-203ENST00000477626 ARHGAP35Q9NRY4 1499 aa19.68■□□□□ 0.74
PRPF39-203ENST00000477626 LRRIQ1Q96JM4 1722 aa19.62■□□□□ 0.73
PRPF39-203ENST00000477626 CLIP1P30622 1438 aa19.62■□□□□ 0.73
PRPF39-203ENST00000477626 GRIN2BQ13224 1484 aa19.62■□□□□ 0.73
PRPF39-203ENST00000477626 TDRD9Q8NDG6 1382 aaKnown RBP19.61■□□□□ 0.73
PRPF39-203ENST00000477626 ERCC6Q03468 1493 aa19.6■□□□□ 0.73
PRPF39-203ENST00000477626 AQRO60306 1485 aaKnown RBP eCLIP19.6■□□□□ 0.732e-7■■■■□ 20.5
PRPF39-203ENST00000477626 VPS8Q8N3P4 1428 aa19.59■□□□□ 0.73
PRPF39-203ENST00000477626 EFCAB5A4FU69 1503 aa19.58■□□□□ 0.73
PRPF39-203ENST00000477626 FHAD1B1AJZ9 1412 aa19.57■□□□□ 0.72
PRPF39-203ENST00000477626 CFAP43Q8NDM7 1665 aa19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms