RNA–Protein interactions for RNA: ENST00000554081.5

PRPF39-205, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 5

Gene PRPF39, Length 3,223 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-205ENST00000554081 AEBP2Q6ZN18 517 aaPredicted RBP7.21□□□□□ -1.26
PRPF39-205ENST00000554081 CHIC1Q5VXU3 224 aa6.87□□□□□ -1.31
PRPF39-205ENST00000554081 POTEDQ86YR6 584 aa6.56□□□□□ -1.36
PRPF39-205ENST00000554081 SENP3Q9H4L4 574 aaPredicted RBP6.38□□□□□ -1.39
PRPF39-205ENST00000554081 PHF23Q9BUL5 403 aaPredicted RBP6.12□□□□□ -1.43
PRPF39-205ENST00000554081 FOXD1Q16676 465 aa5.91□□□□□ -1.46
PRPF39-205ENST00000554081 MSH5O43196 834 aa5.88□□□□□ -1.47
PRPF39-205ENST00000554081 PIAS4Q8N2W9 510 aaPredicted RBP5.35□□□□□ -1.55
PRPF39-205ENST00000554081 DCAF8L2P0C7V8 631 aa5.3□□□□□ -1.56
PRPF39-205ENST00000554081 NISCHQ9Y2I1 1504 aa5.26□□□□□ -1.57
PRPF39-205ENST00000554081 CACNB1Q02641 598 aaPredicted RBP5.25□□□□□ -1.57
PRPF39-205ENST00000554081 POTEHQ6S545 545 aa5.03□□□□□ -1.6
PRPF39-205ENST00000554081 PPP6R1Q9UPN7 881 aa5.01□□□□□ -1.61
PRPF39-205ENST00000554081 ABCC9O60706 1549 aa4.98□□□□□ -1.61
PRPF39-205ENST00000554081 DMRT2Q9Y5R5 561 aa4.98□□□□□ -1.61
PRPF39-205ENST00000554081 ADRA2BP18089 450 aa4.95□□□□□ -1.62
PRPF39-205ENST00000554081 RNF39Q9H2S5 420 aa4.91□□□□□ -1.62
PRPF39-205ENST00000554081 PLPPR3Q6T4P5 718 aa4.89□□□□□ -1.63
PRPF39-205ENST00000554081 C1QBPQ07021 282 aaKnown RBP4.86□□□□□ -1.63
PRPF39-205ENST00000554081 PABPN1Q86U42 306 aaKnown RBP eCLIP4.86□□□□□ -1.632e-9■■■□□ 16.8
PRPF39-205ENST00000554081 SHROOM4Q9ULL8 1493 aa4.77□□□□□ -1.65
PRPF39-205ENST00000554081 DNAJC5BQ9UF47 199 aa4.76□□□□□ -1.65
PRPF39-205ENST00000554081 SCAF1Q9H7N4 1312 aaKnown RBP4.74□□□□□ -1.65
PRPF39-205ENST00000554081 MAPK8IP2Q13387 824 aaPredicted RBP4.68□□□□□ -1.66
PRPF39-205ENST00000554081 HOXD11P31277 338 aaPredicted RBP4.61□□□□□ -1.67
PRPF39-205ENST00000554081 SUPT5HO00267 1087 aaKnown RBP4.57□□□□□ -1.68
PRPF39-205ENST00000554081 DCAF8L1A6NGE4 600 aa4.55□□□□□ -1.68
PRPF39-205ENST00000554081 EHMT2Q96KQ7 1210 aa4.49□□□□□ -1.69
PRPF39-205ENST00000554081 SP7Q8TDD2 431 aaPredicted RBP4.48□□□□□ -1.69
PRPF39-205ENST00000554081 SCRIBQ14160 1630 aa4.45□□□□□ -1.7
PRPF39-205ENST00000554081 TTBK1Q5TCY1 1321 aaPredicted RBP4.45□□□□□ -1.7
PRPF39-205ENST00000554081 RB1CC1Q8TDY2 1594 aa4.43□□□□□ -1.7
PRPF39-205ENST00000554081 FBLN2P98095 1184 aa4.43□□□□□ -1.7
PRPF39-205ENST00000554081 TRIM41Q8WV44 630 aa4.43□□□□□ -1.7
PRPF39-205ENST00000554081 CCDC180Q9P1Z9 1646 aa4.42□□□□□ -1.7
PRPF39-205ENST00000554081 RNF216Q9NWF9 866 aaPredicted RBP4.41□□□□□ -1.7
PRPF39-205ENST00000554081 RANGAP1P46060 587 aaPredicted RBP4.39□□□□□ -1.71
PRPF39-205ENST00000554081 CECR2Q9BXF3 1484 aa4.37□□□□□ -1.71
PRPF39-205ENST00000554081 DSG3P32926 999 aa4.37□□□□□ -1.71
PRPF39-205ENST00000554081 ERCC6Q03468 1493 aa4.34□□□□□ -1.71
PRPF39-205ENST00000554081 NACADO15069 1562 aa4.34□□□□□ -1.72
PRPF39-205ENST00000554081 FAM9AQ8IZU1 332 aaPredicted RBP4.33□□□□□ -1.72
PRPF39-205ENST00000554081 TRHP20396 242 aaPredicted RBP4.32□□□□□ -1.72
PRPF39-205ENST00000554081 ZCCHC6Q5VYS8 1495 aaKnown RBP4.3□□□□□ -1.72
PRPF39-205ENST00000554081 CHRDL2Q6WN34 429 aa4.29□□□□□ -1.72
PRPF39-205ENST00000554081 CNKSR2Q8WXI2 1034 aa4.29□□□□□ -1.72
PRPF39-205ENST00000554081 RBM42Q9BTD8 480 aaKnown RBP4.28□□□□□ -1.72
PRPF39-205ENST00000554081 ATP1B4Q9UN42 357 aaPredicted RBP4.27□□□□□ -1.73
PRPF39-205ENST00000554081 SLC24A1O60721 1099 aa4.25□□□□□ -1.73
PRPF39-205ENST00000554081 ARID3CA6NKF2 412 aa4.25□□□□□ -1.73
PRPF39-205ENST00000554081 CYB5RLQ6IPT4 315 aa4.25□□□□□ -1.73
PRPF39-205ENST00000554081 GRWD1Q9BQ67 446 aaKnown RBP eCLIP4.24□□□□□ -1.732e-6■■□□□ 11.5
PRPF39-205ENST00000554081 CC2D2AQ9P2K1 1620 aa4.24□□□□□ -1.73
PRPF39-205ENST00000554081 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP4.23□□□□□ -1.73
PRPF39-205ENST00000554081 HNRNPUL2Q1KMD3 747 aaKnown RBP4.23□□□□□ -1.73
PRPF39-205ENST00000554081 PLSCR2Q9NRY7 297 aa4.22□□□□□ -1.73
PRPF39-205ENST00000554081 NESP48681 1621 aa4.21□□□□□ -1.74
PRPF39-205ENST00000554081 EIF4G1Q04637 1599 aaKnown RBP4.21□□□□□ -1.74
PRPF39-205ENST00000554081 CHMP7Q8WUX9 453 aaPredicted RBP4.21□□□□□ -1.74
PRPF39-205ENST00000554081 BAZ1BQ9UIG0 1483 aaKnown RBP4.2□□□□□ -1.74
PRPF39-205ENST00000554081 BICRAQ9NZM4 1560 aa4.19□□□□□ -1.74
PRPF39-205ENST00000554081 MYT1LQ9UL68 1186 aa4.19□□□□□ -1.74
PRPF39-205ENST00000554081 SMARCA2P51531 1590 aa4.19□□□□□ -1.74
PRPF39-205ENST00000554081 DNAJC5Q9H3Z4 198 aa4.18□□□□□ -1.74
PRPF39-205ENST00000554081 CAPN15O75808 1086 aa4.17□□□□□ -1.74
PRPF39-205ENST00000554081 LHX8Q68G74 356 aa4.17□□□□□ -1.74
PRPF39-205ENST00000554081 OSCARQ8IYS5 282 aa4.17□□□□□ -1.74
PRPF39-205ENST00000554081 P3H3Q8IVL6 736 aa4.17□□□□□ -1.74
PRPF39-205ENST00000554081 PPP4R3CPQ6ZMV5 832 aa4.16□□□□□ -1.74
PRPF39-205ENST00000554081 UBTFP17480 764 aaKnown RBP4.14□□□□□ -1.75
PRPF39-205ENST00000554081 APLP2Q06481 763 aa4.14□□□□□ -1.75
PRPF39-205ENST00000554081 TDRD9Q8NDG6 1382 aaKnown RBP4.14□□□□□ -1.75
PRPF39-205ENST00000554081 ATAD2BQ9ULI0 1458 aa4.14□□□□□ -1.75
PRPF39-205ENST00000554081 MROH2BQ7Z745 1585 aa4.14□□□□□ -1.75
PRPF39-205ENST00000554081 PDS5BQ9NTI5 1447 aa4.13□□□□□ -1.75
PRPF39-205ENST00000554081 NPM1P06748 294 aaKnown RBP eCLIP4.13□□□□□ -1.75
PRPF39-205ENST00000554081 SPINK5Q9NQ38 1064 aaPredicted RBP4.13□□□□□ -1.75
PRPF39-205ENST00000554081 PCDH10Q9P2E7 1040 aa4.13□□□□□ -1.75
PRPF39-205ENST00000554081 UNC13AQ9UPW8 1703 aa4.13□□□□□ -1.75
PRPF39-205ENST00000554081 KCNH8Q96L42 1107 aa4.12□□□□□ -1.75
PRPF39-205ENST00000554081 U3KPZ7 1027 aaPredicted RBP4.12□□□□□ -1.75
PRPF39-205ENST00000554081 MYO15BQ96JP2 1530 aa4.12□□□□□ -1.75
PRPF39-205ENST00000554081 CADPSQ9ULU8 1353 aa4.11□□□□□ -1.75
PRPF39-205ENST00000554081 RSF1Q96T23 1441 aaPredicted RBP4.1□□□□□ -1.75
PRPF39-205ENST00000554081 ZNF219Q9P2Y4 722 aaPredicted RBP4.09□□□□□ -1.75
PRPF39-205ENST00000554081 DCAF1Q9Y4B6 1507 aa4.09□□□□□ -1.75
PRPF39-205ENST00000554081 BAZ1AQ9NRL2 1556 aaPredicted RBP4.08□□□□□ -1.76
PRPF39-205ENST00000554081 HAX1O00165 279 aa4.08□□□□□ -1.76
PRPF39-205ENST00000554081 PIP4P2Q8N4L2 257 aa4.08□□□□□ -1.76
PRPF39-205ENST00000554081 WIZO95785 1651 aa4.07□□□□□ -1.76
PRPF39-205ENST00000554081 AQRO60306 1485 aaKnown RBP eCLIP4.07□□□□□ -1.762e-7■■■■□ 20.5
PRPF39-205ENST00000554081 NCAPD3P42695 1498 aa4.07□□□□□ -1.76
PRPF39-205ENST00000554081 FANCD2Q9BXW9 1451 aa4.07□□□□□ -1.76
PRPF39-205ENST00000554081 PPARGC1BQ86YN6 1023 aaKnown RBP4.06□□□□□ -1.76
PRPF39-205ENST00000554081 CEP164Q9UPV0 1460 aa4.06□□□□□ -1.76
PRPF39-205ENST00000554081 AKT1S1Q96B36 256 aa4.06□□□□□ -1.76
PRPF39-205ENST00000554081 SMARCA4P51532 1647 aa4.05□□□□□ -1.76
PRPF39-205ENST00000554081 ARID4BQ4LE39 1312 aaPredicted RBP4.04□□□□□ -1.76
PRPF39-205ENST00000554081 FXR2P51116 673 aaKnown RBP eCLIP4.04□□□□□ -1.76
PRPF39-205ENST00000554081 MLECQ14165 292 aa4.04□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms