Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 HNRNPM-211ENST00000598603 784 ntTSL 216.21■□□□□ 0.192e-7■□□□□ 8.5
SMNDC1O75940 PIEZO1-203ENST00000419505 1635 ntTSL 1 (best)17.79■□□□□ 0.448e-7■□□□□ 8.5
SMNDC1O75940 PIEZO1-212ENST00000497793 1228 ntTSL 216.94■□□□□ 0.38e-7■□□□□ 8.5
SMNDC1O75940 PIEZO1-211ENST00000495568 901 ntTSL 211.18□□□□□ -0.628e-7■□□□□ 8.5
SMNDC1O75940 GABRE-208ENST00000483564 2747 ntTSL 310.23□□□□□ -0.778e-7■□□□□ 8.5
SMNDC1O75940 GABRE-209ENST00000486255 6176 ntTSL 1 (best)9.16□□□□□ -0.948e-7■□□□□ 8.5
SMNDC1O75940 CPNE7-205ENST00000529800 519 ntTSL 59.08□□□□□ -0.968e-7■□□□□ 8.5
SMNDC1O75940 GABRE-210ENST00000489333 592 ntTSL 28.81□□□□□ -18e-7■□□□□ 8.5
SMNDC1O75940 GABRE-204ENST00000462018 650 ntTSL 37.41□□□□□ -1.228e-7■□□□□ 8.5
SMNDC1O75940 PIEZO1-204ENST00000466823 584 ntTSL 27.41□□□□□ -1.228e-7■□□□□ 8.5
SMNDC1O75940 GABRE-212ENST00000495862 238 ntTSL 34.26□□□□□ -1.738e-7■□□□□ 8.5
SMNDC1O75940 SLC2A4RG-204ENST00000482718 541 ntTSL 223.78■■□□□ 1.42e-10■□□□□ 8.5
SMNDC1O75940 TCP1-214ENST00000543532 561 ntTSL 421.82■■□□□ 1.085e-9■□□□□ 8.5
SMNDC1O75940 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.865e-9■□□□□ 8.5
SMNDC1O75940 SLC2A4RG-205ENST00000485897 518 ntTSL 520.17■□□□□ 0.822e-10■□□□□ 8.5
SMNDC1O75940 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.735e-9■□□□□ 8.5
SMNDC1O75940 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC19.41■□□□□ 0.71e-7■□□□□ 8.5
SMNDC1O75940 TRA2A-204ENST00000474586 868 ntTSL 319.1■□□□□ 0.655e-9■□□□□ 8.5
SMNDC1O75940 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.645e-9■□□□□ 8.5
SMNDC1O75940 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC18.76■□□□□ 0.593e-7■□□□□ 8.5
SMNDC1O75940 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.521e-7■□□□□ 8.5
SMNDC1O75940 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.525e-9■□□□□ 8.5
SMNDC1O75940 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC17.59■□□□□ 0.413e-7■□□□□ 8.5
SMNDC1O75940 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.363e-7■□□□□ 8.5
SMNDC1O75940 PAK4-210ENST00000599657 534 ntTSL 417.14■□□□□ 0.331e-7■□□□□ 8.5
SMNDC1O75940 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.331e-7■□□□□ 8.5
SMNDC1O75940 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.321e-7■□□□□ 8.5
SMNDC1O75940 VARS2-202ENST00000421263 460 ntTSL 217.01■□□□□ 0.313e-7■□□□□ 8.5
SMNDC1O75940 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC16.93■□□□□ 0.31e-7■□□□□ 8.5
SMNDC1O75940 PAK4-212ENST00000602004 564 ntTSL 416.83■□□□□ 0.281e-7■□□□□ 8.5
SMNDC1O75940 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC16.8■□□□□ 0.281e-7■□□□□ 8.5
SMNDC1O75940 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.271e-7■□□□□ 8.5
SMNDC1O75940 NFIC-211ENST00000641145 8399 ntBASIC16.69■□□□□ 0.263e-7■□□□□ 8.5
SMNDC1O75940 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.211e-7■□□□□ 8.5
SMNDC1O75940 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC16.09■□□□□ 0.173e-7■□□□□ 8.5
SMNDC1O75940 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC16.08■□□□□ 0.163e-7■□□□□ 8.5
SMNDC1O75940 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC15.86■□□□□ 0.133e-7■□□□□ 8.5
SMNDC1O75940 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.093e-7■□□□□ 8.5
SMNDC1O75940 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC15.44■□□□□ 0.061e-7■□□□□ 8.5
SMNDC1O75940 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC15.31■□□□□ 0.043e-7■□□□□ 8.5
SMNDC1O75940 TRAPPC3-207ENST00000497251 715 ntTSL 215.21■□□□□ 0.033e-7■□□□□ 8.5
SMNDC1O75940 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC15.11■□□□□ 0.013e-7■□□□□ 8.5
SMNDC1O75940 LSS-209ENST00000484808 251 ntTSL 514.98□□□□□ -0.016e-13■□□□□ 8.5
SMNDC1O75940 NFIC-208ENST00000589537 977 ntTSL 214.93□□□□□ -0.023e-7■□□□□ 8.5
SMNDC1O75940 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC14.46□□□□□ -0.093e-7■□□□□ 8.5
SMNDC1O75940 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC14.45□□□□□ -0.13e-7■□□□□ 8.5
SMNDC1O75940 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC14.28□□□□□ -0.123e-7■□□□□ 8.5
SMNDC1O75940 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC14.22□□□□□ -0.133e-7■□□□□ 8.5
SMNDC1O75940 TRA2A-203ENST00000448549 582 ntTSL 414.05□□□□□ -0.165e-9■□□□□ 8.5
SMNDC1O75940 TRA2A-208ENST00000490942 862 ntTSL 1 (best)14.02□□□□□ -0.175e-9■□□□□ 8.5
SMNDC1O75940 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC13.9□□□□□ -0.183e-7■□□□□ 8.5
SMNDC1O75940 BTNL9-208ENST00000512570 885 ntTSL 513.87□□□□□ -0.191e-7■□□□□ 8.5
SMNDC1O75940 TCP1-210ENST00000538530 918 ntTSL 513.58□□□□□ -0.245e-9■□□□□ 8.5
SMNDC1O75940 TRAPPC3-205ENST00000462715 2428 ntTSL 212.62□□□□□ -0.393e-7■□□□□ 8.5
SMNDC1O75940 SLC2A4RG-206ENST00000491109 637 ntTSL 212.36□□□□□ -0.432e-10■□□□□ 8.5
SMNDC1O75940 TCP1-207ENST00000536807 873 ntTSL 212.16□□□□□ -0.465e-9■□□□□ 8.5
SMNDC1O75940 SNHG15-205ENST00000580458 710 ntTSL 2 BASIC12.12□□□□□ -0.473e-7■□□□□ 8.5
SMNDC1O75940 SNHG15-204ENST00000579383 731 ntTSL 211.9□□□□□ -0.53e-7■□□□□ 8.5
SMNDC1O75940 TRAPPC3-201ENST00000373159 590 ntTSL 3 BASIC11.82□□□□□ -0.523e-7■□□□□ 8.5
SMNDC1O75940 AIG1-204ENST00000367601 727 ntTSL 511.26□□□□□ -0.611e-7■□□□□ 8.5
SMNDC1O75940 TRA2A-209ENST00000494255 1653 ntTSL 1 (best)11.14□□□□□ -0.635e-9■□□□□ 8.5
SMNDC1O75940 AIG1-205ENST00000447498 444 ntTSL 510.86□□□□□ -0.671e-7■□□□□ 8.5
SMNDC1O75940 SNHG15-209ENST00000584686 541 ntTSL 3 BASIC10.52□□□□□ -0.733e-7■□□□□ 8.5
SMNDC1O75940 SNHG15-210ENST00000585030 953 ntTSL 3 BASIC10.26□□□□□ -0.773e-7■□□□□ 8.5
SMNDC1O75940 SNHG15-208ENST00000584327 505 ntTSL 3 BASIC9.95□□□□□ -0.823e-7■□□□□ 8.5
SMNDC1O75940 SNHG15-201ENST00000438705 509 ntTSL 3 BASIC9.93□□□□□ -0.823e-7■□□□□ 8.5
SMNDC1O75940 AIG1-201ENST00000275235 1202 ntTSL 2 BASIC9.83□□□□□ -0.841e-7■□□□□ 8.5
SMNDC1O75940 PNISR-207ENST00000478777 2422 ntTSL 29.47□□□□□ -0.895e-9■□□□□ 8.5
SMNDC1O75940 RIF1-202ENST00000414861 2534 ntTSL 1 (best)8.65□□□□□ -1.021e-7■□□□□ 8.5
SMNDC1O75940 AIG1-202ENST00000357847 1395 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.031e-7■□□□□ 8.5
SMNDC1O75940 RIF1-205ENST00000444746 7897 ntAPPRIS P3 TSL 1 (best) BASIC8.34□□□□□ -1.071e-7■□□□□ 8.5
SMNDC1O75940 RIF1-206ENST00000453091 8053 ntAPPRIS ALT2 TSL 1 (best) BASIC8.16□□□□□ -1.11e-7■□□□□ 8.5
SMNDC1O75940 RIF1-201ENST00000243326 15003 ntAPPRIS P3 TSL 1 (best) BASIC8.06□□□□□ -1.121e-7■□□□□ 8.5
SMNDC1O75940 TRAPPC3-206ENST00000469757 221 ntTSL 27.35□□□□□ -1.233e-7■□□□□ 8.5
SMNDC1O75940 AIG1-209ENST00000629020 3636 ntTSL 2 BASIC6.65□□□□□ -1.341e-7■□□□□ 8.5
SMNDC1O75940 AIG1-207ENST00000470265 572 ntTSL 26.65□□□□□ -1.341e-7■□□□□ 8.5
SMNDC1O75940 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC6.34□□□□□ -1.395e-9■□□□□ 8.5
SMNDC1O75940 PNISR-204ENST00000463021 1939 ntTSL 1 (best)6.21□□□□□ -1.425e-9■□□□□ 8.5
SMNDC1O75940 AIG1-206ENST00000458219 593 ntTSL 26.11□□□□□ -1.431e-7■□□□□ 8.5
SMNDC1O75940 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.51e-7■□□□□ 8.5
SMNDC1O75940 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC5.15□□□□□ -1.591e-7■□□□□ 8.5
SMNDC1O75940 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.695e-9■□□□□ 8.5
SMNDC1O75940 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.082e-6■□□□□ 8.4
SMNDC1O75940 PLXNB1-203ENST00000449094 3863 ntTSL 212.78□□□□□ -0.362e-6■□□□□ 8.4
SMNDC1O75940 WDR1-209ENST00000505851 715 ntTSL 219.7■□□□□ 0.742e-7■□□□□ 8.4
SMNDC1O75940 WDR1-213ENST00000509600 559 ntTSL 217.76■□□□□ 0.432e-7■□□□□ 8.4
SMNDC1O75940 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC16.99■□□□□ 0.312e-7■□□□□ 8.4
SMNDC1O75940 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.132e-7■□□□□ 8.4
SMNDC1O75940 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC15.74■□□□□ 0.112e-7■□□□□ 8.4
SMNDC1O75940 WDR1-211ENST00000508079 812 ntTSL 312.43□□□□□ -0.422e-7■□□□□ 8.4
SMNDC1O75940 WDR1-216ENST00000514319 719 ntTSL 512.34□□□□□ -0.432e-7■□□□□ 8.4
SMNDC1O75940 WDR1-204ENST00000499869 3054 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.452e-7■□□□□ 8.4
SMNDC1O75940 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC15.24■□□□□ 0.038e-7■□□□□ 8.4
SMNDC1O75940 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC14.93□□□□□ -0.028e-7■□□□□ 8.4
SMNDC1O75940 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.048e-7■□□□□ 8.4
SMNDC1O75940 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.078e-7■□□□□ 8.4
SMNDC1O75940 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC14.3□□□□□ -0.128e-7■□□□□ 8.4
SMNDC1O75940 MLXIPL-202ENST00000345114 3079 ntTSL 1 (best)13.71□□□□□ -0.228e-7■□□□□ 8.4
SMNDC1O75940 NKD1-203ENST00000566396 748 ntTSL 312.49□□□□□ -0.419e-13■□□□□ 8.4
SMNDC1O75940 ZRANB2-206ENST00000487510 579 ntTSL 210.75□□□□□ -0.698e-7■□□□□ 8.4
Retrieved 100 of 11,362 protein–RNA pairs in 118.2 ms