RNA–Protein interactions for RNA: ENST00000430328.6

RIF1-204, Transcript of replication timing regulatory factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RIF1, Length 7,992 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-204ENST00000430328 PELP1Q8IZL8 1130 aaKnown RBP27.51■■□□□ 1.99
RIF1-204ENST00000430328 DCAF8L2P0C7V8 631 aa26.59■■□□□ 1.85
RIF1-204ENST00000430328 ERICH6Q7L0X2 663 aa26.42■■□□□ 1.82
RIF1-204ENST00000430328 CCER1Q8TC90 406 aaPredicted RBP26.21■■□□□ 1.79
RIF1-204ENST00000430328 MYT1Q01538 1121 aa26.14■■□□□ 1.78
RIF1-204ENST00000430328 CENPBP07199 599 aaPredicted RBP25.56■■□□□ 1.68
RIF1-204ENST00000430328 SUPT5HO00267 1087 aaKnown RBP25.39■■□□□ 1.66
RIF1-204ENST00000430328 APLP2Q06481 763 aa25.38■■□□□ 1.65
RIF1-204ENST00000430328 YTHDC1Q96MU7 727 aaKnown RBP25.28■■□□□ 1.64
RIF1-204ENST00000430328 EHMT2Q96KQ7 1210 aa25.27■■□□□ 1.64
RIF1-204ENST00000430328 NEFLP07196 543 aa25.2■■□□□ 1.62
RIF1-204ENST00000430328 DAXXQ9UER7 740 aaPredicted RBP25■■□□□ 1.59
RIF1-204ENST00000430328 FAM9AQ8IZU1 332 aaPredicted RBP24.99■■□□□ 1.59
RIF1-204ENST00000430328 TTBK1Q5TCY1 1321 aaPredicted RBP24.88■■□□□ 1.57
RIF1-204ENST00000430328 ZEB1P37275 1124 aaPredicted RBP24.79■■□□□ 1.56
RIF1-204ENST00000430328 PCGF6Q9BYE7 350 aa24.78■■□□□ 1.56
RIF1-204ENST00000430328 RTL5Q5HYW3 569 aaPredicted RBP24.38■■□□□ 1.49
RIF1-204ENST00000430328 SHROOM4Q9ULL8 1493 aa24.28■■□□□ 1.48
RIF1-204ENST00000430328 ZNF316A6NFI3 1004 aaPredicted RBP24.27■■□□□ 1.48
RIF1-204ENST00000430328 ATP1B4Q9UN42 357 aaPredicted RBP24.11■■□□□ 1.45
RIF1-204ENST00000430328 RANGAP1P46060 587 aaPredicted RBP23.99■■□□□ 1.43
RIF1-204ENST00000430328 CLSPNQ9HAW4 1339 aa23.96■■□□□ 1.43
RIF1-204ENST00000430328 POLR3GLQ9BT43 218 aa23.74■■□□□ 1.39
RIF1-204ENST00000430328 GLIPR1L2Q4G1C9 344 aa23.62■■□□□ 1.37
RIF1-204ENST00000430328 UBTFP17480 764 aaKnown RBP23.59■■□□□ 1.37
RIF1-204ENST00000430328 EIF5BO60841 1220 aaKnown RBP23.5■■□□□ 1.35
RIF1-204ENST00000430328 TRIM41Q8WV44 630 aa23.47■■□□□ 1.35
RIF1-204ENST00000430328 CNGB1Q14028 1251 aaPredicted RBP23.46■■□□□ 1.35
RIF1-204ENST00000430328 SLC4A1APQ9BWU0 796 aaKnown RBP23.44■■□□□ 1.34
RIF1-204ENST00000430328 ZBTB47Q9UFB7 747 aaPredicted RBP23.41■■□□□ 1.34
RIF1-204ENST00000430328 MYT1LQ9UL68 1186 aa23.38■■□□□ 1.33
RIF1-204ENST00000430328 HRCP23327 699 aa23.37■■□□□ 1.33
RIF1-204ENST00000430328 CDK11AQ9UQ88 783 aaPredicted RBP23.31■■□□□ 1.32
RIF1-204ENST00000430328 ANP32BQ92688 251 aaKnown RBP23.31■■□□□ 1.32
RIF1-204ENST00000430328 TRIM26Q12899 539 aaPredicted RBP23.26■■□□□ 1.31
RIF1-204ENST00000430328 PPARGC1BQ86YN6 1023 aaKnown RBP23.16■■□□□ 1.3
RIF1-204ENST00000430328 ITGAEP38570 1179 aa23.13■■□□□ 1.29
RIF1-204ENST00000430328 ANP32AP39687 249 aaKnown RBP23.08■■□□□ 1.29
RIF1-204ENST00000430328 DIEXFQ68CQ4 756 aaKnown RBP23.05■■□□□ 1.28
RIF1-204ENST00000430328 CHIC1Q5VXU3 224 aa23.04■■□□□ 1.28
RIF1-204ENST00000430328 BCANQ96GW7 911 aa23.01■■□□□ 1.27
RIF1-204ENST00000430328 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.97■■□□□ 1.27
RIF1-204ENST00000430328 HNRNPUL2Q1KMD3 747 aaKnown RBP22.97■■□□□ 1.27
RIF1-204ENST00000430328 BCL11AQ9H165 835 aa22.94■■□□□ 1.26
RIF1-204ENST00000430328 CANXP27824 592 aaKnown RBP22.92■■□□□ 1.26
RIF1-204ENST00000430328 GTF3C3Q9Y5Q9 886 aa22.87■■□□□ 1.25
RIF1-204ENST00000430328 HSP90AA1P07900 732 aaKnown RBP22.87■■□□□ 1.25
RIF1-204ENST00000430328 SLC24A1O60721 1099 aa22.86■■□□□ 1.25
RIF1-204ENST00000430328 TNNT2P45379 298 aaPredicted RBP22.76■■□□□ 1.23
RIF1-204ENST00000430328 NPM2Q86SE8 214 aaKnown RBP22.75■■□□□ 1.23
RIF1-204ENST00000430328 ANP32CO43423 234 aa22.73■■□□□ 1.23
RIF1-204ENST00000430328 CDK11BP21127 795 aaKnown RBP22.71■■□□□ 1.23
RIF1-204ENST00000430328 NEFMP07197 916 aa22.7■■□□□ 1.22
RIF1-204ENST00000430328 UPF2Q9HAU5 1272 aaKnown RBP22.66■■□□□ 1.22
RIF1-204ENST00000430328 NISCHQ9Y2I1 1504 aa22.47■■□□□ 1.19
RIF1-204ENST00000430328 ARXQ96QS3 562 aa22.47■■□□□ 1.19
RIF1-204ENST00000430328 NBR1Q14596 966 aa22.44■■□□□ 1.18
RIF1-204ENST00000430328 TRIM52Q96A61 297 aa22.42■■□□□ 1.18
RIF1-204ENST00000430328 NEUROD1Q13562 356 aa22.41■■□□□ 1.18
RIF1-204ENST00000430328 TRIM44Q96DX7 344 aaPredicted RBP22.38■■□□□ 1.17
RIF1-204ENST00000430328 FAM50AQ14320 339 aaKnown RBP22.35■■□□□ 1.17
RIF1-204ENST00000430328 ZNF326Q5BKZ1 582 aaKnown RBP22.32■■□□□ 1.16
RIF1-204ENST00000430328 ACIN1Q9UKV3 1341 aaKnown RBP22.23■■□□□ 1.15
RIF1-204ENST00000430328 ANP32EQ9BTT0 268 aa22.19■■□□□ 1.14
RIF1-204ENST00000430328 FKBP8Q14318 412 aa22.16■■□□□ 1.14
RIF1-204ENST00000430328 DNTTIP2Q5QJE6 756 aaKnown RBP22.16■■□□□ 1.14
RIF1-204ENST00000430328 NCLP19338 710 aaKnown RBP22.14■■□□□ 1.14
RIF1-204ENST00000430328 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.11■■□□□ 1.13
RIF1-204ENST00000430328 LOC105371045A0A1W2PR82 267 aa22.1■■□□□ 1.13
RIF1-204ENST00000430328 PTMAP06454 111 aaKnown RBP22.07■■□□□ 1.12
RIF1-204ENST00000430328 GOLGA6L22H0YM25 854 aa22.04■■□□□ 1.12
RIF1-204ENST00000430328 ZRSR1Q15695 479 aaKnown RBP22.04■■□□□ 1.12
RIF1-204ENST00000430328 ERICH6BQ5W0A0 696 aa22.03■■□□□ 1.12
RIF1-204ENST00000430328 CCDC136Q96JN2 1154 aa22.02■■□□□ 1.12
RIF1-204ENST00000430328 NAP1L5Q96NT1 182 aaPredicted RBP22.01■■□□□ 1.11
RIF1-204ENST00000430328 BECN1Q14457 450 aa22.01■■□□□ 1.11
RIF1-204ENST00000430328 DDRGK1Q96HY6 314 aa21.96■■□□□ 1.11
RIF1-204ENST00000430328 AMER1Q5JTC6 1135 aaPredicted RBP21.95■■□□□ 1.11
RIF1-204ENST00000430328 MYH16Q9H6N6 1097 aa21.91■■□□□ 1.1
RIF1-204ENST00000430328 HNRNPUQ00839 825 aaKnown RBP eCLIP21.88■■□□□ 1.09
RIF1-204ENST00000430328 GOLGA6L6A8MZA4 724 aa21.82■■□□□ 1.08
RIF1-204ENST00000430328 TULP1O00294 542 aaPredicted RBP21.79■■□□□ 1.08
RIF1-204ENST00000430328 CHAF1AQ13111 956 aaPredicted RBP21.77■■□□□ 1.08
RIF1-204ENST00000430328 NRDCO43847 1150 aa21.76■■□□□ 1.07
RIF1-204ENST00000430328 FAM9BQ8IZU0 186 aa21.75■■□□□ 1.07
RIF1-204ENST00000430328 SALL2Q9Y467 1007 aaPredicted RBP21.74■■□□□ 1.07
RIF1-204ENST00000430328 RTN4Q9NQC3 1192 aaKnown RBP21.7■■□□□ 1.06
RIF1-204ENST00000430328 TMC1Q8TDI8 760 aa21.68■■□□□ 1.06
RIF1-204ENST00000430328 PLCB2Q00722 1185 aa21.66■■□□□ 1.06
RIF1-204ENST00000430328 TNNT3P45378 269 aaPredicted RBP21.66■■□□□ 1.06
RIF1-204ENST00000430328 WDR43Q15061 677 aaKnown RBP eCLIP21.65■■□□□ 1.068e-6■■□□□ 11.7
RIF1-204ENST00000430328 L1TD1Q5T7N2 865 aaKnown RBP21.64■■□□□ 1.06
RIF1-204ENST00000430328 CASC1Q6TDU7 716 aa21.64■■□□□ 1.05
RIF1-204ENST00000430328 TPRNQ4KMQ1 711 aa21.62■■□□□ 1.05
RIF1-204ENST00000430328 PPM1GO15355 546 aaPredicted RBP21.62■■□□□ 1.05
RIF1-204ENST00000430328 MSNP26038 577 aaKnown RBP21.57■■□□□ 1.04
RIF1-204ENST00000430328 NCBP3Q53F19 620 aaKnown RBP21.57■■□□□ 1.04
RIF1-204ENST00000430328 ESF1Q9H501 851 aaKnown RBP21.54■■□□□ 1.04
RIF1-204ENST00000430328 STAG3Q9UJ98 1225 aa21.52■■□□□ 1.04
RIF1-204ENST00000430328 CALRP27797 417 aaKnown RBP21.51■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms