RNA–Protein interactions for RNA: ENST00000243326.9

RIF1-201, Transcript of replication timing regulatory factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene RIF1, Length 15,003 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-201ENST00000243326 DCAF8L2P0C7V8 631 aa12.89□□□□□ -0.35
RIF1-201ENST00000243326 EHMT2Q96KQ7 1210 aa12.73□□□□□ -0.37
RIF1-201ENST00000243326 SUPT5HO00267 1087 aaKnown RBP12.6□□□□□ -0.39
RIF1-201ENST00000243326 SHROOM4Q9ULL8 1493 aa12.44□□□□□ -0.42
RIF1-201ENST00000243326 TTBK1Q5TCY1 1321 aaPredicted RBP12.29□□□□□ -0.44
RIF1-201ENST00000243326 PCGF6Q9BYE7 350 aa12.15□□□□□ -0.46
RIF1-201ENST00000243326 FAM9AQ8IZU1 332 aaPredicted RBP12.02□□□□□ -0.48
RIF1-201ENST00000243326 YTHDC1Q96MU7 727 aaKnown RBP11.96□□□□□ -0.5
RIF1-201ENST00000243326 PPARGC1BQ86YN6 1023 aaKnown RBP11.85□□□□□ -0.51
RIF1-201ENST00000243326 RANGAP1P46060 587 aaPredicted RBP11.84□□□□□ -0.51
RIF1-201ENST00000243326 PELP1Q8IZL8 1130 aaKnown RBP11.81□□□□□ -0.52
RIF1-201ENST00000243326 ERICH6Q7L0X2 663 aa11.75□□□□□ -0.53
RIF1-201ENST00000243326 MYT1Q01538 1121 aa11.75□□□□□ -0.53
RIF1-201ENST00000243326 CCER1Q8TC90 406 aaPredicted RBP11.66□□□□□ -0.54
RIF1-201ENST00000243326 NISCHQ9Y2I1 1504 aa11.66□□□□□ -0.54
RIF1-201ENST00000243326 CENPBP07199 599 aaPredicted RBP11.63□□□□□ -0.55
RIF1-201ENST00000243326 APLP2Q06481 763 aa11.53□□□□□ -0.56
RIF1-201ENST00000243326 CNGB1Q14028 1251 aaPredicted RBP11.45□□□□□ -0.58
RIF1-201ENST00000243326 HRCP23327 699 aa11.44□□□□□ -0.58
RIF1-201ENST00000243326 ATP1B4Q9UN42 357 aaPredicted RBP11.44□□□□□ -0.58
RIF1-201ENST00000243326 LOC105371045A0A1W2PR82 267 aa11.4□□□□□ -0.58
RIF1-201ENST00000243326 ZEB1P37275 1124 aaPredicted RBP11.34□□□□□ -0.59
RIF1-201ENST00000243326 TRIM41Q8WV44 630 aa11.34□□□□□ -0.59
RIF1-201ENST00000243326 NEFLP07196 543 aa11.34□□□□□ -0.59
RIF1-201ENST00000243326 BCANQ96GW7 911 aa11.28□□□□□ -0.6
RIF1-201ENST00000243326 UBTFP17480 764 aaKnown RBP11.26□□□□□ -0.61
RIF1-201ENST00000243326 ITGAEP38570 1179 aa11.26□□□□□ -0.61
RIF1-201ENST00000243326 POLR3GLQ9BT43 218 aa11.26□□□□□ -0.61
RIF1-201ENST00000243326 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.24□□□□□ -0.61
RIF1-201ENST00000243326 HNRNPUL2Q1KMD3 747 aaKnown RBP11.23□□□□□ -0.61
RIF1-201ENST00000243326 TRIM26Q12899 539 aaPredicted RBP11.2□□□□□ -0.62
RIF1-201ENST00000243326 GTF3C3Q9Y5Q9 886 aa11.18□□□□□ -0.62
RIF1-201ENST00000243326 DIEXFQ68CQ4 756 aaKnown RBP11.09□□□□□ -0.63
RIF1-201ENST00000243326 CHIC1Q5VXU3 224 aa11.01□□□□□ -0.65
RIF1-201ENST00000243326 DAXXQ9UER7 740 aaPredicted RBP10.99□□□□□ -0.65
RIF1-201ENST00000243326 BCL11AQ9H165 835 aa10.91□□□□□ -0.66
RIF1-201ENST00000243326 NEUROD1Q13562 356 aa10.88□□□□□ -0.67
RIF1-201ENST00000243326 RTL5Q5HYW3 569 aaPredicted RBP10.87□□□□□ -0.67
RIF1-201ENST00000243326 SCAF1Q9H7N4 1312 aaKnown RBP10.86□□□□□ -0.67
RIF1-201ENST00000243326 ACIN1Q9UKV3 1341 aaKnown RBP10.85□□□□□ -0.67
RIF1-201ENST00000243326 ZNF316A6NFI3 1004 aaPredicted RBP10.83□□□□□ -0.68
RIF1-201ENST00000243326 NPM2Q86SE8 214 aaKnown RBP10.82□□□□□ -0.68
RIF1-201ENST00000243326 SLC4A1APQ9BWU0 796 aaKnown RBP10.82□□□□□ -0.68
RIF1-201ENST00000243326 CLSPNQ9HAW4 1339 aa10.81□□□□□ -0.68
RIF1-201ENST00000243326 EIF5BO60841 1220 aaKnown RBP10.77□□□□□ -0.68
RIF1-201ENST00000243326 FAM50AQ14320 339 aaKnown RBP10.76□□□□□ -0.69
RIF1-201ENST00000243326 MYT1LQ9UL68 1186 aa10.75□□□□□ -0.69
RIF1-201ENST00000243326 NBR1Q14596 966 aa10.73□□□□□ -0.69
RIF1-201ENST00000243326 ZNF326Q5BKZ1 582 aaKnown RBP10.73□□□□□ -0.69
RIF1-201ENST00000243326 IRX6P78412 446 aaPredicted RBP10.71□□□□□ -0.7
RIF1-201ENST00000243326 ARXQ96QS3 562 aa10.71□□□□□ -0.7
RIF1-201ENST00000243326 FKBP8Q14318 412 aa10.7□□□□□ -0.7
RIF1-201ENST00000243326 CDK11AQ9UQ88 783 aaPredicted RBP10.7□□□□□ -0.7
RIF1-201ENST00000243326 SENP3-EIF4A1A0A087X0R7 540 aa10.68□□□□□ -0.7
RIF1-201ENST00000243326 TRIM52Q96A61 297 aa10.64□□□□□ -0.71
RIF1-201ENST00000243326 ARID3CA6NKF2 412 aa10.59□□□□□ -0.71
RIF1-201ENST00000243326 SALL2Q9Y467 1007 aaPredicted RBP10.58□□□□□ -0.72
RIF1-201ENST00000243326 RTN4Q9NQC3 1192 aaKnown RBP10.57□□□□□ -0.72
RIF1-201ENST00000243326 ANP32CO43423 234 aa10.56□□□□□ -0.72
RIF1-201ENST00000243326 HIRIP3Q9BW71 556 aaPredicted RBP10.54□□□□□ -0.72
RIF1-201ENST00000243326 MIER1Q8N108 512 aa10.52□□□□□ -0.73
RIF1-201ENST00000243326 P3H3Q8IVL6 736 aa10.5□□□□□ -0.73
RIF1-201ENST00000243326 DDX10Q13206 875 aaKnown RBP10.49□□□□□ -0.73
RIF1-201ENST00000243326 ANP32AP39687 249 aaKnown RBP10.49□□□□□ -0.73
RIF1-201ENST00000243326 MYO15BQ96JP2 1530 aa10.48□□□□□ -0.73
RIF1-201ENST00000243326 FAM9BQ8IZU0 186 aa10.48□□□□□ -0.73
RIF1-201ENST00000243326 CANXP27824 592 aaKnown RBP10.47□□□□□ -0.73
RIF1-201ENST00000243326 SLC24A1O60721 1099 aa10.47□□□□□ -0.73
RIF1-201ENST00000243326 HNRNPUQ00839 825 aaKnown RBP eCLIP10.44□□□□□ -0.74
RIF1-201ENST00000243326 SENP3Q9H4L4 574 aaPredicted RBP10.39□□□□□ -0.75
RIF1-201ENST00000243326 PABPN1Q86U42 306 aaKnown RBP eCLIP10.36□□□□□ -0.75
RIF1-201ENST00000243326 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.33□□□□□ -0.76
RIF1-201ENST00000243326 LAS1LQ9Y4W2 734 aaKnown RBP10.33□□□□□ -0.76
RIF1-201ENST00000243326 TPRNQ4KMQ1 711 aa10.33□□□□□ -0.76
RIF1-201ENST00000243326 ANP32EQ9BTT0 268 aa10.32□□□□□ -0.76
RIF1-201ENST00000243326 ZBTB47Q9UFB7 747 aaPredicted RBP10.3□□□□□ -0.76
RIF1-201ENST00000243326 AMER1Q5JTC6 1135 aaPredicted RBP10.29□□□□□ -0.76
RIF1-201ENST00000243326 ARID4BQ4LE39 1312 aaPredicted RBP10.28□□□□□ -0.76
RIF1-201ENST00000243326 CCDC136Q96JN2 1154 aa10.27□□□□□ -0.76
RIF1-201ENST00000243326 ZNF777Q9ULD5 760 aaPredicted RBP10.26□□□□□ -0.77
RIF1-201ENST00000243326 ZBTB7CA1YPR0 619 aa10.23□□□□□ -0.77
RIF1-201ENST00000243326 CHIC2Q9UKJ5 165 aa10.23□□□□□ -0.77
RIF1-201ENST00000243326 SUPT16HQ9Y5B9 1047 aaKnown RBP10.23□□□□□ -0.77
RIF1-201ENST00000243326 HSP90AA1P07900 732 aaKnown RBP10.22□□□□□ -0.77
RIF1-201ENST00000243326 PLPPR3Q6T4P5 718 aa10.22□□□□□ -0.77
RIF1-201ENST00000243326 CSRNP3Q8WYN3 585 aa10.21□□□□□ -0.77
RIF1-201ENST00000243326 FBLN2P98095 1184 aa10.21□□□□□ -0.78
RIF1-201ENST00000243326 DCAF1Q9Y4B6 1507 aa10.2□□□□□ -0.78
RIF1-201ENST00000243326 KDM2AQ9Y2K7 1162 aa10.19□□□□□ -0.78
RIF1-201ENST00000243326 ARID3AQ99856 593 aa10.19□□□□□ -0.78
RIF1-201ENST00000243326 PLEKHG5O94827 1062 aa10.18□□□□□ -0.78
RIF1-201ENST00000243326 TONSLQ96HA7 1378 aa10.18□□□□□ -0.78
RIF1-201ENST00000243326 GLIPR1L2Q4G1C9 344 aa10.17□□□□□ -0.78
RIF1-201ENST00000243326 MRS2Q9HD23 443 aa10.17□□□□□ -0.78
RIF1-201ENST00000243326 ABCC9O60706 1549 aa10.16□□□□□ -0.78
RIF1-201ENST00000243326 DEKP35659 375 aaKnown RBP10.15□□□□□ -0.78
RIF1-201ENST00000243326 NAP1L5Q96NT1 182 aaPredicted RBP10.14□□□□□ -0.79
RIF1-201ENST00000243326 B4GALNT3Q6L9W6 998 aa10.14□□□□□ -0.79
RIF1-201ENST00000243326 NCLP19338 710 aaKnown RBP10.13□□□□□ -0.79
RIF1-201ENST00000243326 CHGAP10645 457 aaKnown RBP10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms