RNA–Protein interactions for RNA: ENST00000483564.5

GABRE-208, Transcript of gamma-aminobutyric acid type A receptor epsilon subunit, humanhuman

TSL 3

Gene GABRE, Length 2,747 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABRE-208ENST00000483564 NISCHQ9Y2I1 1504 aa17.77■□□□□ 0.43
GABRE-208ENST00000483564 PELP1Q8IZL8 1130 aaKnown RBP15.74■□□□□ 0.11
GABRE-208ENST00000483564 HRCP23327 699 aa15.65■□□□□ 0.1
GABRE-208ENST00000483564 CCDC180Q9P1Z9 1646 aa15.53■□□□□ 0.08
GABRE-208ENST00000483564 PPARGC1BQ86YN6 1023 aaKnown RBP15.48■□□□□ 0.07
GABRE-208ENST00000483564 PCGF6Q9BYE7 350 aa15.37■□□□□ 0.05
GABRE-208ENST00000483564 SUPT5HO00267 1087 aaKnown RBP15.33■□□□□ 0.04
GABRE-208ENST00000483564 SHROOM4Q9ULL8 1493 aa15.32■□□□□ 0.04
GABRE-208ENST00000483564 MYT1Q01538 1121 aa15.25■□□□□ 0.03
GABRE-208ENST00000483564 MYO15BQ96JP2 1530 aa15.15■□□□□ 0.02
GABRE-208ENST00000483564 SCAF1Q9H7N4 1312 aaKnown RBP15.08■□□□□ 0.01
GABRE-208ENST00000483564 CHIC1Q5VXU3 224 aa15.05■□□□□ -0
GABRE-208ENST00000483564 ZCCHC6Q5VYS8 1495 aaKnown RBP14.93□□□□□ -0.02
GABRE-208ENST00000483564 LOC105371045A0A1W2PR82 267 aa14.83□□□□□ -0.04
GABRE-208ENST00000483564 DCAF1Q9Y4B6 1507 aa14.74□□□□□ -0.05
GABRE-208ENST00000483564 TRIM26Q12899 539 aaPredicted RBP14.72□□□□□ -0.05
GABRE-208ENST00000483564 DCAF8L2P0C7V8 631 aa14.6□□□□□ -0.07
GABRE-208ENST00000483564 ZEB1P37275 1124 aaPredicted RBP14.55□□□□□ -0.08
GABRE-208ENST00000483564 ABCC9O60706 1549 aa14.54□□□□□ -0.08
GABRE-208ENST00000483564 NEUROD1Q13562 356 aa14.5□□□□□ -0.09
GABRE-208ENST00000483564 ACIN1Q9UKV3 1341 aaKnown RBP14.48□□□□□ -0.09
GABRE-208ENST00000483564 GTF3C3Q9Y5Q9 886 aa14.48□□□□□ -0.09
GABRE-208ENST00000483564 NACADO15069 1562 aa14.45□□□□□ -0.1
GABRE-208ENST00000483564 TTBK1Q5TCY1 1321 aaPredicted RBP14.43□□□□□ -0.1
GABRE-208ENST00000483564 BCL11AQ9H165 835 aa14.39□□□□□ -0.11
GABRE-208ENST00000483564 RB1CC1Q8TDY2 1594 aa14.3□□□□□ -0.12
GABRE-208ENST00000483564 FAM9AQ8IZU1 332 aaPredicted RBP14.29□□□□□ -0.12
GABRE-208ENST00000483564 PRKCSHP14314 528 aaPredicted RBP14.27□□□□□ -0.13
GABRE-208ENST00000483564 EHMT2Q96KQ7 1210 aa14.25□□□□□ -0.13
GABRE-208ENST00000483564 CENPBP07199 599 aaPredicted RBP14.25□□□□□ -0.13
GABRE-208ENST00000483564 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.21□□□□□ -0.13
GABRE-208ENST00000483564 SCRIBQ14160 1630 aa14.2□□□□□ -0.14
GABRE-208ENST00000483564 DIEXFQ68CQ4 756 aaKnown RBP14.18□□□□□ -0.14
GABRE-208ENST00000483564 CCER1Q8TC90 406 aaPredicted RBP14.12□□□□□ -0.15
GABRE-208ENST00000483564 TRIM41Q8WV44 630 aa14.07□□□□□ -0.16
GABRE-208ENST00000483564 YTHDC1Q96MU7 727 aaKnown RBP14.06□□□□□ -0.16
GABRE-208ENST00000483564 UNC13AQ9UPW8 1703 aa13.99□□□□□ -0.17
GABRE-208ENST00000483564 ANP32EQ9BTT0 268 aa13.97□□□□□ -0.17
GABRE-208ENST00000483564 CSRNP3Q8WYN3 585 aa13.91□□□□□ -0.18
GABRE-208ENST00000483564 MIER1Q8N108 512 aa13.86□□□□□ -0.19
GABRE-208ENST00000483564 ZNF316A6NFI3 1004 aaPredicted RBP13.84□□□□□ -0.19
GABRE-208ENST00000483564 BICRAQ9NZM4 1560 aa13.82□□□□□ -0.2
GABRE-208ENST00000483564 ERICH6Q7L0X2 663 aa13.79□□□□□ -0.2
GABRE-208ENST00000483564 RSF1Q96T23 1441 aaPredicted RBP13.77□□□□□ -0.21
GABRE-208ENST00000483564 CECR2Q9BXF3 1484 aa13.75□□□□□ -0.21
GABRE-208ENST00000483564 BAZ1AQ9NRL2 1556 aaPredicted RBP13.74□□□□□ -0.21
GABRE-208ENST00000483564 PABPN1Q86U42 306 aaKnown RBP eCLIP13.7□□□□□ -0.229e-7■■■□□ 14.9
GABRE-208ENST00000483564 MROH2BQ7Z745 1585 aa13.69□□□□□ -0.22
GABRE-208ENST00000483564 TSHZ2Q9NRE2 1034 aa13.68□□□□□ -0.22
GABRE-208ENST00000483564 APLP2Q06481 763 aa13.66□□□□□ -0.22
GABRE-208ENST00000483564 SUPT16HQ9Y5B9 1047 aaKnown RBP13.66□□□□□ -0.22
GABRE-208ENST00000483564 SMARCA4P51532 1647 aa13.65□□□□□ -0.22
GABRE-208ENST00000483564 WIZO95785 1651 aa13.59□□□□□ -0.23
GABRE-208ENST00000483564 HNRNPUL2Q1KMD3 747 aaKnown RBP13.53□□□□□ -0.24
GABRE-208ENST00000483564 PEG3Q9GZU2 1588 aa13.51□□□□□ -0.25
GABRE-208ENST00000483564 ANO8Q9HCE9 1232 aaPredicted RBP13.5□□□□□ -0.25
GABRE-208ENST00000483564 TOP2AP11388 1531 aaKnown RBP13.48□□□□□ -0.25
GABRE-208ENST00000483564 BCANQ96GW7 911 aa13.45□□□□□ -0.26
GABRE-208ENST00000483564 WRNQ14191 1432 aaPredicted RBP eCLIP13.45□□□□□ -0.26
GABRE-208ENST00000483564 SMARCA2P51531 1590 aa13.44□□□□□ -0.26
GABRE-208ENST00000483564 CEP162Q5TB80 1403 aa13.43□□□□□ -0.26
GABRE-208ENST00000483564 EIF4G1Q04637 1599 aaKnown RBP13.41□□□□□ -0.26
GABRE-208ENST00000483564 ATAD2BQ9ULI0 1458 aa13.41□□□□□ -0.26
GABRE-208ENST00000483564 CLSPNQ9HAW4 1339 aa13.4□□□□□ -0.26
GABRE-208ENST00000483564 KCNH8Q96L42 1107 aa13.37□□□□□ -0.27
GABRE-208ENST00000483564 UBTFP17480 764 aaKnown RBP13.36□□□□□ -0.27
GABRE-208ENST00000483564 BAZ1BQ9UIG0 1483 aaKnown RBP13.34□□□□□ -0.27
GABRE-208ENST00000483564 CCDC88BA6NC98 1476 aa13.32□□□□□ -0.28
GABRE-208ENST00000483564 RBM19Q9Y4C8 960 aaKnown RBP13.32□□□□□ -0.28
GABRE-208ENST00000483564 NCAPD3P42695 1498 aa13.31□□□□□ -0.28
GABRE-208ENST00000483564 FKBP8Q14318 412 aa13.3□□□□□ -0.28
GABRE-208ENST00000483564 HMGXB3Q12766 1538 aa13.3□□□□□ -0.28
GABRE-208ENST00000483564 TNIKQ9UKE5 1360 aa13.29□□□□□ -0.28
GABRE-208ENST00000483564 SOGA1O94964 1423 aa13.29□□□□□ -0.28
GABRE-208ENST00000483564 CCDC136Q96JN2 1154 aa13.28□□□□□ -0.28
GABRE-208ENST00000483564 SALL2Q9Y467 1007 aaPredicted RBP13.28□□□□□ -0.28
GABRE-208ENST00000483564 MSH5O43196 834 aa13.27□□□□□ -0.28
GABRE-208ENST00000483564 ITGAEP38570 1179 aa13.25□□□□□ -0.29
GABRE-208ENST00000483564 ABCC8Q09428 1581 aa13.24□□□□□ -0.29
GABRE-208ENST00000483564 RUSC2Q8N2Y8 1516 aa13.22□□□□□ -0.29
GABRE-208ENST00000483564 CC2D2AQ9P2K1 1620 aa13.2□□□□□ -0.3
GABRE-208ENST00000483564 DEKP35659 375 aaKnown RBP13.2□□□□□ -0.3
GABRE-208ENST00000483564 RANGAP1P46060 587 aaPredicted RBP13.17□□□□□ -0.3
GABRE-208ENST00000483564 DHX57Q6P158 1386 aaKnown RBP13.15□□□□□ -0.3
GABRE-208ENST00000483564 UBE2Q2Q8WVN8 375 aa13.14□□□□□ -0.31
GABRE-208ENST00000483564 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.11□□□□□ -0.31
GABRE-208ENST00000483564 TRIM52Q96A61 297 aa13.1□□□□□ -0.31
GABRE-208ENST00000483564 NEFLP07196 543 aa13.08□□□□□ -0.32
GABRE-208ENST00000483564 DDX10Q13206 875 aaKnown RBP13.07□□□□□ -0.32
GABRE-208ENST00000483564 GOLGA3Q08378 1498 aa13.06□□□□□ -0.32
GABRE-208ENST00000483564 CLIP1P30622 1438 aa13.06□□□□□ -0.32
GABRE-208ENST00000483564 RTN4Q9NQC3 1192 aaKnown RBP13.04□□□□□ -0.32
GABRE-208ENST00000483564 MYT1LQ9UL68 1186 aa13.02□□□□□ -0.32
GABRE-208ENST00000483564 CFTRP13569 1480 aa13.01□□□□□ -0.33
GABRE-208ENST00000483564 VPS8Q8N3P4 1428 aa13□□□□□ -0.33
GABRE-208ENST00000483564 EEA1Q15075 1411 aa13□□□□□ -0.33
GABRE-208ENST00000483564 IRX6P78412 446 aaPredicted RBP13□□□□□ -0.33
GABRE-208ENST00000483564 PRDM2Q13029 1718 aa13□□□□□ -0.33
GABRE-208ENST00000483564 HIRIP3Q9BW71 556 aaPredicted RBP12.99□□□□□ -0.33
GABRE-208ENST00000483564 NBR1Q14596 966 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms