RNA–Protein interactions for RNA: ENST00000486255.1

GABRE-209, Transcript of gamma-aminobutyric acid type A receptor epsilon subunit, humanhuman

TSL 1 (best)

Gene GABRE, Length 6,176 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABRE-209ENST00000486255 NISCHQ9Y2I1 1504 aa15.64■□□□□ 0.09
GABRE-209ENST00000486255 DCAF8L2P0C7V8 631 aa14.67□□□□□ -0.06
GABRE-209ENST00000486255 PELP1Q8IZL8 1130 aaKnown RBP14.42□□□□□ -0.1
GABRE-209ENST00000486255 ERICH6Q7L0X2 663 aa13.94□□□□□ -0.18
GABRE-209ENST00000486255 MYT1Q01538 1121 aa13.85□□□□□ -0.19
GABRE-209ENST00000486255 SUPT5HO00267 1087 aaKnown RBP13.75□□□□□ -0.21
GABRE-209ENST00000486255 CCER1Q8TC90 406 aaPredicted RBP13.75□□□□□ -0.21
GABRE-209ENST00000486255 CENPBP07199 599 aaPredicted RBP13.61□□□□□ -0.23
GABRE-209ENST00000486255 EHMT2Q96KQ7 1210 aa13.61□□□□□ -0.23
GABRE-209ENST00000486255 SHROOM4Q9ULL8 1493 aa13.46□□□□□ -0.25
GABRE-209ENST00000486255 APLP2Q06481 763 aa13.45□□□□□ -0.26
GABRE-209ENST00000486255 CCDC180Q9P1Z9 1646 aa13.42□□□□□ -0.26
GABRE-209ENST00000486255 PCGF6Q9BYE7 350 aa13.33□□□□□ -0.28
GABRE-209ENST00000486255 NEFLP07196 543 aa13.32□□□□□ -0.28
GABRE-209ENST00000486255 ZEB1P37275 1124 aaPredicted RBP13.32□□□□□ -0.28
GABRE-209ENST00000486255 TTBK1Q5TCY1 1321 aaPredicted RBP13.24□□□□□ -0.29
GABRE-209ENST00000486255 YTHDC1Q96MU7 727 aaKnown RBP13.21□□□□□ -0.29
GABRE-209ENST00000486255 DAXXQ9UER7 740 aaPredicted RBP13.11□□□□□ -0.31
GABRE-209ENST00000486255 ZCCHC6Q5VYS8 1495 aaKnown RBP13.1□□□□□ -0.31
GABRE-209ENST00000486255 FAM9AQ8IZU1 332 aaPredicted RBP13.07□□□□□ -0.32
GABRE-209ENST00000486255 ABCC9O60706 1549 aa12.93□□□□□ -0.34
GABRE-209ENST00000486255 RANGAP1P46060 587 aaPredicted RBP12.88□□□□□ -0.35
GABRE-209ENST00000486255 RTL5Q5HYW3 569 aaPredicted RBP12.88□□□□□ -0.35
GABRE-209ENST00000486255 ATP1B4Q9UN42 357 aaPredicted RBP12.83□□□□□ -0.36
GABRE-209ENST00000486255 DCAF1Q9Y4B6 1507 aa12.81□□□□□ -0.36
GABRE-209ENST00000486255 ZNF316A6NFI3 1004 aaPredicted RBP12.8□□□□□ -0.36
GABRE-209ENST00000486255 TRIM41Q8WV44 630 aa12.69□□□□□ -0.38
GABRE-209ENST00000486255 HRCP23327 699 aa12.68□□□□□ -0.38
GABRE-209ENST00000486255 NACADO15069 1562 aa12.68□□□□□ -0.38
GABRE-209ENST00000486255 UBTFP17480 764 aaKnown RBP12.64□□□□□ -0.39
GABRE-209ENST00000486255 MYT1LQ9UL68 1186 aa12.64□□□□□ -0.39
GABRE-209ENST00000486255 RB1CC1Q8TDY2 1594 aa12.63□□□□□ -0.39
GABRE-209ENST00000486255 TRIM26Q12899 539 aaPredicted RBP12.63□□□□□ -0.39
GABRE-209ENST00000486255 SCRIBQ14160 1630 aa12.63□□□□□ -0.39
GABRE-209ENST00000486255 POLR3GLQ9BT43 218 aa12.62□□□□□ -0.39
GABRE-209ENST00000486255 CLSPNQ9HAW4 1339 aa12.6□□□□□ -0.39
GABRE-209ENST00000486255 PPARGC1BQ86YN6 1023 aaKnown RBP12.58□□□□□ -0.39
GABRE-209ENST00000486255 MYO15BQ96JP2 1530 aa12.57□□□□□ -0.4
GABRE-209ENST00000486255 CNGB1Q14028 1251 aaPredicted RBP12.49□□□□□ -0.41
GABRE-209ENST00000486255 CHIC1Q5VXU3 224 aa12.44□□□□□ -0.42
GABRE-209ENST00000486255 DIEXFQ68CQ4 756 aaKnown RBP12.44□□□□□ -0.42
GABRE-209ENST00000486255 CDK11AQ9UQ88 783 aaPredicted RBP12.44□□□□□ -0.42
GABRE-209ENST00000486255 BCANQ96GW7 911 aa12.43□□□□□ -0.42
GABRE-209ENST00000486255 ITGAEP38570 1179 aa12.41□□□□□ -0.42
GABRE-209ENST00000486255 GTF3C3Q9Y5Q9 886 aa12.41□□□□□ -0.42
GABRE-209ENST00000486255 EIF5BO60841 1220 aaKnown RBP12.4□□□□□ -0.42
GABRE-209ENST00000486255 GLIPR1L2Q4G1C9 344 aa12.39□□□□□ -0.43
GABRE-209ENST00000486255 PABPN1Q86U42 306 aaKnown RBP eCLIP12.39□□□□□ -0.439e-7■■■□□ 14.9
GABRE-209ENST00000486255 SLC4A1APQ9BWU0 796 aaKnown RBP12.36□□□□□ -0.43
GABRE-209ENST00000486255 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.33□□□□□ -0.44
GABRE-209ENST00000486255 HNRNPUL2Q1KMD3 747 aaKnown RBP12.33□□□□□ -0.44
GABRE-209ENST00000486255 ZBTB47Q9UFB7 747 aaPredicted RBP12.27□□□□□ -0.45
GABRE-209ENST00000486255 ANP32AP39687 249 aaKnown RBP12.27□□□□□ -0.45
GABRE-209ENST00000486255 RSF1Q96T23 1441 aaPredicted RBP12.25□□□□□ -0.45
GABRE-209ENST00000486255 ANP32BQ92688 251 aaKnown RBP12.22□□□□□ -0.45
GABRE-209ENST00000486255 BAZ1AQ9NRL2 1556 aaPredicted RBP12.21□□□□□ -0.45
GABRE-209ENST00000486255 ANP32CO43423 234 aa12.18□□□□□ -0.46
GABRE-209ENST00000486255 NPM2Q86SE8 214 aaKnown RBP12.17□□□□□ -0.46
GABRE-209ENST00000486255 FBLN2P98095 1184 aa12.16□□□□□ -0.46
GABRE-209ENST00000486255 CANXP27824 592 aaKnown RBP12.15□□□□□ -0.46
GABRE-209ENST00000486255 PLPPR3Q6T4P5 718 aa12.15□□□□□ -0.46
GABRE-209ENST00000486255 ACIN1Q9UKV3 1341 aaKnown RBP12.13□□□□□ -0.47
GABRE-209ENST00000486255 LOC105371045A0A1W2PR82 267 aa12.12□□□□□ -0.47
GABRE-209ENST00000486255 BCL11AQ9H165 835 aa12.1□□□□□ -0.47
GABRE-209ENST00000486255 NEUROD1Q13562 356 aa12.07□□□□□ -0.48
GABRE-209ENST00000486255 CECR2Q9BXF3 1484 aa12.06□□□□□ -0.48
GABRE-209ENST00000486255 TRIM52Q96A61 297 aa12.03□□□□□ -0.48
GABRE-209ENST00000486255 FAM50AQ14320 339 aaKnown RBP12.02□□□□□ -0.48
GABRE-209ENST00000486255 MROH2BQ7Z745 1585 aa12.02□□□□□ -0.49
GABRE-209ENST00000486255 NBR1Q14596 966 aa12.02□□□□□ -0.49
GABRE-209ENST00000486255 BAZ1BQ9UIG0 1483 aaKnown RBP12.01□□□□□ -0.49
GABRE-209ENST00000486255 HSP90AA1P07900 732 aaKnown RBP12.01□□□□□ -0.49
GABRE-209ENST00000486255 SLC24A1O60721 1099 aa11.98□□□□□ -0.49
GABRE-209ENST00000486255 FKBP8Q14318 412 aa11.97□□□□□ -0.49
GABRE-209ENST00000486255 SMARCA2P51531 1590 aa11.97□□□□□ -0.49
GABRE-209ENST00000486255 TOP2AP11388 1531 aaKnown RBP11.95□□□□□ -0.5
GABRE-209ENST00000486255 UPF2Q9HAU5 1272 aaKnown RBP11.95□□□□□ -0.5
GABRE-209ENST00000486255 SMARCA4P51532 1647 aa11.94□□□□□ -0.5
GABRE-209ENST00000486255 ARXQ96QS3 562 aa11.94□□□□□ -0.5
GABRE-209ENST00000486255 ZNF326Q5BKZ1 582 aaKnown RBP11.93□□□□□ -0.5
GABRE-209ENST00000486255 NEFMP07197 916 aa11.92□□□□□ -0.5
GABRE-209ENST00000486255 TNNT2P45379 298 aaPredicted RBP11.91□□□□□ -0.5
GABRE-209ENST00000486255 WIZO95785 1651 aa11.89□□□□□ -0.51
GABRE-209ENST00000486255 EEA1Q15075 1411 aa11.88□□□□□ -0.51
GABRE-209ENST00000486255 CSRNP3Q8WYN3 585 aa11.86□□□□□ -0.51
GABRE-209ENST00000486255 CCDC88BA6NC98 1476 aa11.84□□□□□ -0.51
GABRE-209ENST00000486255 ESF1Q9H501 851 aaKnown RBP11.84□□□□□ -0.51
GABRE-209ENST00000486255 TRHP20396 242 aaPredicted RBP11.81□□□□□ -0.52
GABRE-209ENST00000486255 WRNQ14191 1432 aaPredicted RBP eCLIP11.81□□□□□ -0.52
GABRE-209ENST00000486255 TRIM44Q96DX7 344 aaPredicted RBP11.81□□□□□ -0.52
GABRE-209ENST00000486255 AEBP2Q6ZN18 517 aaPredicted RBP11.8□□□□□ -0.52
GABRE-209ENST00000486255 ATAD2BQ9ULI0 1458 aa11.79□□□□□ -0.52
GABRE-209ENST00000486255 CDK11BP21127 795 aaKnown RBP11.78□□□□□ -0.52
GABRE-209ENST00000486255 NPM1P06748 294 aaKnown RBP eCLIP11.77□□□□□ -0.53
GABRE-209ENST00000486255 CCDC136Q96JN2 1154 aa11.76□□□□□ -0.53
GABRE-209ENST00000486255 DDRGK1Q96HY6 314 aa11.74□□□□□ -0.53
GABRE-209ENST00000486255 HNRNPUQ00839 825 aaKnown RBP eCLIP11.74□□□□□ -0.53
GABRE-209ENST00000486255 ANP32EQ9BTT0 268 aa11.73□□□□□ -0.53
GABRE-209ENST00000486255 NAP1L5Q96NT1 182 aaPredicted RBP11.73□□□□□ -0.53
GABRE-209ENST00000486255 GOLGA3Q08378 1498 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms