RNA–Protein interactions for RNA: ENST00000373166.7

TRAPPC3-204, Transcript of trafficking protein particle complex 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAPPC3, Length 1,265 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC3-204ENST00000373166 NISCHQ9Y2I1 1504 aa48.2■■■■■ 5.31
TRAPPC3-204ENST00000373166 ABCC9O60706 1549 aa43.8■■■■■ 4.6
TRAPPC3-204ENST00000373166 CCDC180Q9P1Z9 1646 aa43.33■■■■■ 4.53
TRAPPC3-204ENST00000373166 RB1CC1Q8TDY2 1594 aa41.5■■■■■ 4.23
TRAPPC3-204ENST00000373166 DNAJC5BQ9UF47 199 aa41.46■■■■■ 4.23
TRAPPC3-204ENST00000373166 NACADO15069 1562 aa41.14■■■■■ 4.18
TRAPPC3-204ENST00000373166 DCAF8L2P0C7V8 631 aa40.98■■■■■ 4.15
TRAPPC3-204ENST00000373166 PABPN1Q86U42 306 aaKnown RBP eCLIP40.78■■■■■ 4.12
TRAPPC3-204ENST00000373166 MYO15BQ96JP2 1530 aa40.46■■■■■ 4.07
TRAPPC3-204ENST00000373166 UNC13AQ9UPW8 1703 aa40.38■■■■■ 4.05
TRAPPC3-204ENST00000373166 BICRAQ9NZM4 1560 aa40.26■■■■■ 4.04
TRAPPC3-204ENST00000373166 ZCCHC6Q5VYS8 1495 aaKnown RBP39.84■■■■□ 3.97
TRAPPC3-204ENST00000373166 DCAF1Q9Y4B6 1507 aa39.79■■■■□ 3.96
TRAPPC3-204ENST00000373166 SHROOM4Q9ULL8 1493 aa39.75■■■■□ 3.95
TRAPPC3-204ENST00000373166 CECR2Q9BXF3 1484 aa39.51■■■■□ 3.92
TRAPPC3-204ENST00000373166 CC2D2AQ9P2K1 1620 aa39.5■■■■□ 3.91
TRAPPC3-204ENST00000373166 SCRIBQ14160 1630 aa39.48■■■■□ 3.91
TRAPPC3-204ENST00000373166 EIF4G1Q04637 1599 aaKnown RBP39.33■■■■□ 3.89
TRAPPC3-204ENST00000373166 DNAJC5Q9H3Z4 198 aa38.4■■■■□ 3.74
TRAPPC3-204ENST00000373166 NCAPD3P42695 1498 aa38.03■■■■□ 3.68
TRAPPC3-204ENST00000373166 CUX2O14529 1486 aa37.92■■■■□ 3.66
TRAPPC3-204ENST00000373166 ERCC6Q03468 1493 aa37.88■■■■□ 3.65
TRAPPC3-204ENST00000373166 ATAD2BQ9ULI0 1458 aa37.83■■■■□ 3.65
TRAPPC3-204ENST00000373166 SMARCA2P51531 1590 aa37.69■■■■□ 3.62
TRAPPC3-204ENST00000373166 HMGXB3Q12766 1538 aa37.64■■■■□ 3.62
TRAPPC3-204ENST00000373166 SMARCA4P51532 1647 aa37.63■■■■□ 3.61
TRAPPC3-204ENST00000373166 NESP48681 1621 aa37.49■■■■□ 3.59
TRAPPC3-204ENST00000373166 BAZ1BQ9UIG0 1483 aaKnown RBP37.45■■■■□ 3.59
TRAPPC3-204ENST00000373166 BAZ1AQ9NRL2 1556 aaPredicted RBP37.44■■■■□ 3.58
TRAPPC3-204ENST00000373166 PEG3Q9GZU2 1588 aa37.28■■■■□ 3.56
TRAPPC3-204ENST00000373166 LAMC3Q9Y6N6 1575 aa37.17■■■■□ 3.54
TRAPPC3-204ENST00000373166 THOC2Q8NI27 1593 aaKnown RBP37.12■■■■□ 3.53
TRAPPC3-204ENST00000373166 MROH2BQ7Z745 1585 aa37.12■■■■□ 3.53
TRAPPC3-204ENST00000373166 PDS5BQ9NTI5 1447 aa37.06■■■■□ 3.52
TRAPPC3-204ENST00000373166 KIF21AQ7Z4S6 1674 aa36.9■■■■□ 3.5
TRAPPC3-204ENST00000373166 CADPSQ9ULU8 1353 aa36.88■■■■□ 3.49
TRAPPC3-204ENST00000373166 MRC2Q9UBG0 1479 aa36.7■■■■□ 3.47
TRAPPC3-204ENST00000373166 WIZO95785 1651 aa36.6■■■■□ 3.45
TRAPPC3-204ENST00000373166 WDR62O43379 1518 aa36.59■■■■□ 3.45
TRAPPC3-204ENST00000373166 TRIM41Q8WV44 630 aa36.56■■■■□ 3.44
TRAPPC3-204ENST00000373166 CEP164Q9UPV0 1460 aa36.5■■■■□ 3.43
TRAPPC3-204ENST00000373166 FANCD2Q9BXW9 1451 aa36.42■■■■□ 3.42
TRAPPC3-204ENST00000373166 CFTRP13569 1480 aa36.34■■■■□ 3.41
TRAPPC3-204ENST00000373166 RSF1Q96T23 1441 aaPredicted RBP36.25■■■■□ 3.39
TRAPPC3-204ENST00000373166 OSCARQ8IYS5 282 aa36.22■■■■□ 3.39
TRAPPC3-204ENST00000373166 TOP2AP11388 1531 aaKnown RBP36.16■■■■□ 3.38
TRAPPC3-204ENST00000373166 URB2Q14146 1524 aaKnown RBP36.11■■■■□ 3.37
TRAPPC3-204ENST00000373166 CCDC88BA6NC98 1476 aa35.8■■■■□ 3.32
TRAPPC3-204ENST00000373166 IFT140Q96RY7 1462 aa35.79■■■■□ 3.32
TRAPPC3-204ENST00000373166 PRDM2Q13029 1718 aa35.74■■■■□ 3.31
TRAPPC3-204ENST00000373166 ZNF608Q9ULD9 1512 aaPredicted RBP35.73■■■■□ 3.31
TRAPPC3-204ENST00000373166 TOPBP1Q92547 1522 aa35.66■■■■□ 3.3
TRAPPC3-204ENST00000373166 RIMBP3CA6NJZ7 1639 aa35.62■■■■□ 3.29
TRAPPC3-204ENST00000373166 RIMBP3BA6NNM3 1639 aa35.62■■■■□ 3.29
TRAPPC3-204ENST00000373166 RIMBP3Q9UFD9 1639 aa35.62■■■■□ 3.29
TRAPPC3-204ENST00000373166 ABCC8Q09428 1581 aa35.62■■■■□ 3.29
TRAPPC3-204ENST00000373166 ARHGEF11O15085 1522 aa35.52■■■■□ 3.28
TRAPPC3-204ENST00000373166 DNMBPQ6XZF7 1577 aa35.47■■■■□ 3.27
TRAPPC3-204ENST00000373166 EIF4G3O43432 1585 aaKnown RBP35.46■■■■□ 3.27
TRAPPC3-204ENST00000373166 AQRO60306 1485 aaKnown RBP eCLIP35.4■■■■□ 3.265e-8■■■■■ 40.7
TRAPPC3-204ENST00000373166 CYB5RLQ6IPT4 315 aa35.39■■■■□ 3.26
TRAPPC3-204ENST00000373166 TARBP1Q13395 1621 aaKnown RBP35.32■■■■□ 3.25
TRAPPC3-204ENST00000373166 FBLN2P98095 1184 aa35.32■■■■□ 3.24
TRAPPC3-204ENST00000373166 POLA1P09884 1462 aaPredicted RBP35.28■■■■□ 3.24
TRAPPC3-204ENST00000373166 CHD1O14646 1710 aa35.21■■■■□ 3.23
TRAPPC3-204ENST00000373166 SOGA1O94964 1423 aa35.17■■■■□ 3.22
TRAPPC3-204ENST00000373166 RAD54L2Q9Y4B4 1467 aa35.16■■■■□ 3.22
TRAPPC3-204ENST00000373166 ARAP1Q96P48 1450 aa35.15■■■■□ 3.22
TRAPPC3-204ENST00000373166 TDRD9Q8NDG6 1382 aaKnown RBP35.14■■■■□ 3.22
TRAPPC3-204ENST00000373166 TRHP20396 242 aaPredicted RBP35.14■■■■□ 3.22
TRAPPC3-204ENST00000373166 CHMP7Q8WUX9 453 aaPredicted RBP35■■■■□ 3.19
TRAPPC3-204ENST00000373166 SNAPC4Q5SXM2 1469 aa35■■■■□ 3.19
TRAPPC3-204ENST00000373166 FGD5Q6ZNL6 1462 aa35■■■■□ 3.19
TRAPPC3-204ENST00000373166 WDR97A6NE52 1622 aa34.97■■■■□ 3.19
TRAPPC3-204ENST00000373166 MAGI1Q96QZ7 1491 aaPredicted RBP34.91■■■■□ 3.18
TRAPPC3-204ENST00000373166 CUX1P39880 1505 aa34.89■■■■□ 3.18
TRAPPC3-204ENST00000373166 GRIN2BQ13224 1484 aa34.89■■■■□ 3.18
TRAPPC3-204ENST00000373166 CLASP1Q7Z460 1538 aa34.88■■■■□ 3.17
TRAPPC3-204ENST00000373166 SYNJ1O43426 1573 aa34.86■■■■□ 3.17
TRAPPC3-204ENST00000373166 SYNJ2O15056 1496 aa34.81■■■■□ 3.16
TRAPPC3-204ENST00000373166 GAPVD1Q14C86 1478 aa34.71■■■■□ 3.15
TRAPPC3-204ENST00000373166 ABCA10Q8WWZ4 1543 aa34.59■■■■□ 3.13
TRAPPC3-204ENST00000373166 PBRM1Q86U86 1689 aa34.57■■■■□ 3.13
TRAPPC3-204ENST00000373166 ABCA5Q8WWZ7 1642 aa34.51■■■■□ 3.11
TRAPPC3-204ENST00000373166 SUPT5HO00267 1087 aaKnown RBP34.44■■■■□ 3.1
TRAPPC3-204ENST00000373166 WRNQ14191 1432 aaPredicted RBP eCLIP34.44■■■■□ 3.1
TRAPPC3-204ENST00000373166 GRIN2AQ12879 1464 aa34.41■■■■□ 3.1
TRAPPC3-204ENST00000373166 AEBP2Q6ZN18 517 aaPredicted RBP34.41■■■■□ 3.1
TRAPPC3-204ENST00000373166 NUP160Q12769 1436 aa34.31■■■■□ 3.08
TRAPPC3-204ENST00000373166 ERCC6L2Q5T890 1561 aa34.3■■■■□ 3.08
TRAPPC3-204ENST00000373166 ADAMTS12P58397 1594 aa34.28■■■■□ 3.08
TRAPPC3-204ENST00000373166 FHAD1B1AJZ9 1412 aa34.27■■■■□ 3.08
TRAPPC3-204ENST00000373166 CEP170Q5SW79 1584 aa34.26■■■■□ 3.07
TRAPPC3-204ENST00000373166 TOP2BQ02880 1626 aa34.22■■■■□ 3.07
TRAPPC3-204ENST00000373166 BIVM-ERCC5R4GMW8 1640 aa34.18■■■■□ 3.06
TRAPPC3-204ENST00000373166 ERICH3Q5RHP9 1530 aa34.14■■■■□ 3.06
TRAPPC3-204ENST00000373166 SHROOM2Q13796 1616 aa34.13■■■■□ 3.05
TRAPPC3-204ENST00000373166 JPH4Q96JJ6 628 aa34.05■■■■□ 3.04
TRAPPC3-204ENST00000373166 PRG4Q92954 1404 aaPredicted RBP34.04■■■■□ 3.04
TRAPPC3-204ENST00000373166 NPM1P06748 294 aaKnown RBP eCLIP33.88■■■■□ 3.01
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms