RNA–Protein interactions for RNA: ENST00000421263.1

VARS2-202, Transcript of valyl-tRNA synthetase 2, mitochondrial, humanhuman

TSL 2

Gene VARS2, Length 460 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2-202ENST00000421263 NISCHQ9Y2I1 1504 aa47.26■■■■■ 5.16
VARS2-202ENST00000421263 CCDC180Q9P1Z9 1646 aa42.29■■■■■ 4.36
VARS2-202ENST00000421263 ABCC9O60706 1549 aa42.13■■■■■ 4.33
VARS2-202ENST00000421263 RB1CC1Q8TDY2 1594 aa40.19■■■■■ 4.02
VARS2-202ENST00000421263 NACADO15069 1562 aa39.99■■■■□ 3.99
VARS2-202ENST00000421263 DCAF8L2P0C7V8 631 aa39.77■■■■□ 3.96
VARS2-202ENST00000421263 MYO15BQ96JP2 1530 aa39.55■■■■□ 3.92
VARS2-202ENST00000421263 DNAJC5BQ9UF47 199 aa39.5■■■■□ 3.91
VARS2-202ENST00000421263 PABPN1Q86U42 306 aaKnown RBP eCLIP39.28■■■■□ 3.88
VARS2-202ENST00000421263 UNC13AQ9UPW8 1703 aa39.26■■■■□ 3.88
VARS2-202ENST00000421263 ZCCHC6Q5VYS8 1495 aaKnown RBP39.18■■■■□ 3.86
VARS2-202ENST00000421263 DCAF1Q9Y4B6 1507 aa39.09■■■■□ 3.85
VARS2-202ENST00000421263 BICRAQ9NZM4 1560 aa39.05■■■■□ 3.84
VARS2-202ENST00000421263 SHROOM4Q9ULL8 1493 aa38.54■■■■□ 3.76
VARS2-202ENST00000421263 SCRIBQ14160 1630 aa38.49■■■■□ 3.75
VARS2-202ENST00000421263 CC2D2AQ9P2K1 1620 aa38.09■■■■□ 3.69
VARS2-202ENST00000421263 EIF4G1Q04637 1599 aaKnown RBP38.05■■■■□ 3.68
VARS2-202ENST00000421263 CECR2Q9BXF3 1484 aa37.96■■■■□ 3.67
VARS2-202ENST00000421263 NCAPD3P42695 1498 aa36.96■■■■□ 3.51
VARS2-202ENST00000421263 ATAD2BQ9ULI0 1458 aa36.84■■■■□ 3.49
VARS2-202ENST00000421263 SMARCA4P51532 1647 aa36.79■■■■□ 3.48
VARS2-202ENST00000421263 SMARCA2P51531 1590 aa36.7■■■■□ 3.47
VARS2-202ENST00000421263 BAZ1AQ9NRL2 1556 aaPredicted RBP36.65■■■■□ 3.46
VARS2-202ENST00000421263 HMGXB3Q12766 1538 aa36.64■■■■□ 3.46
VARS2-202ENST00000421263 PEG3Q9GZU2 1588 aa36.49■■■■□ 3.43
VARS2-202ENST00000421263 BAZ1BQ9UIG0 1483 aaKnown RBP36.43■■■■□ 3.42
VARS2-202ENST00000421263 MROH2BQ7Z745 1585 aa36.4■■■■□ 3.42
VARS2-202ENST00000421263 ERCC6Q03468 1493 aa36.33■■■■□ 3.41
VARS2-202ENST00000421263 CUX2O14529 1486 aa36.28■■■■□ 3.4
VARS2-202ENST00000421263 NESP48681 1621 aa36.25■■■■□ 3.39
VARS2-202ENST00000421263 DNAJC5Q9H3Z4 198 aa36.15■■■■□ 3.38
VARS2-202ENST00000421263 LAMC3Q9Y6N6 1575 aa36.04■■■■□ 3.36
VARS2-202ENST00000421263 WIZO95785 1651 aa35.94■■■■□ 3.34
VARS2-202ENST00000421263 THOC2Q8NI27 1593 aaKnown RBP35.85■■■■□ 3.33
VARS2-202ENST00000421263 PDS5BQ9NTI5 1447 aa35.84■■■■□ 3.33
VARS2-202ENST00000421263 CADPSQ9ULU8 1353 aa35.83■■■■□ 3.33
VARS2-202ENST00000421263 KIF21AQ7Z4S6 1674 aa35.75■■■■□ 3.31
VARS2-202ENST00000421263 RSF1Q96T23 1441 aaPredicted RBP35.74■■■■□ 3.31
VARS2-202ENST00000421263 TOP2AP11388 1531 aaKnown RBP35.51■■■■□ 3.27
VARS2-202ENST00000421263 MRC2Q9UBG0 1479 aa35.49■■■■□ 3.27
VARS2-202ENST00000421263 CFTRP13569 1480 aa35.45■■■■□ 3.27
VARS2-202ENST00000421263 WDR62O43379 1518 aa35.41■■■■□ 3.26
VARS2-202ENST00000421263 FANCD2Q9BXW9 1451 aa35.37■■■■□ 3.25
VARS2-202ENST00000421263 CEP164Q9UPV0 1460 aa35.37■■■■□ 3.25
VARS2-202ENST00000421263 CCDC88BA6NC98 1476 aa35.16■■■■□ 3.22
VARS2-202ENST00000421263 URB2Q14146 1524 aaKnown RBP35.08■■■■□ 3.21
VARS2-202ENST00000421263 PRDM2Q13029 1718 aa35.01■■■■□ 3.2
VARS2-202ENST00000421263 TOPBP1Q92547 1522 aa34.73■■■■□ 3.15
VARS2-202ENST00000421263 ABCC8Q09428 1581 aa34.7■■■■□ 3.14
VARS2-202ENST00000421263 OSCARQ8IYS5 282 aa34.69■■■■□ 3.14
VARS2-202ENST00000421263 IFT140Q96RY7 1462 aa34.69■■■■□ 3.14
VARS2-202ENST00000421263 ZNF608Q9ULD9 1512 aaPredicted RBP34.61■■■■□ 3.13
VARS2-202ENST00000421263 DNMBPQ6XZF7 1577 aa34.59■■■■□ 3.13
VARS2-202ENST00000421263 TRIM41Q8WV44 630 aa34.51■■■■□ 3.12
VARS2-202ENST00000421263 TARBP1Q13395 1621 aaKnown RBP34.41■■■■□ 3.1
VARS2-202ENST00000421263 EIF4G3O43432 1585 aaKnown RBP34.38■■■■□ 3.09
VARS2-202ENST00000421263 POLA1P09884 1462 aaPredicted RBP34.38■■■■□ 3.09
VARS2-202ENST00000421263 AQRO60306 1485 aaKnown RBP eCLIP34.33■■■■□ 3.096e-6■■■■□ 25.1
VARS2-202ENST00000421263 SOGA1O94964 1423 aa34.25■■■■□ 3.07
VARS2-202ENST00000421263 RAD54L2Q9Y4B4 1467 aa34.25■■■■□ 3.07
VARS2-202ENST00000421263 SUPT5HO00267 1087 aaKnown RBP34.21■■■■□ 3.07
VARS2-202ENST00000421263 CUX1P39880 1505 aa34.18■■■■□ 3.06
VARS2-202ENST00000421263 FGD5Q6ZNL6 1462 aa34.17■■■■□ 3.06
VARS2-202ENST00000421263 TDRD9Q8NDG6 1382 aaKnown RBP34.15■■■■□ 3.06
VARS2-202ENST00000421263 RIMBP3CA6NJZ7 1639 aa34.15■■■■□ 3.06
VARS2-202ENST00000421263 RIMBP3BA6NNM3 1639 aa34.15■■■■□ 3.06
VARS2-202ENST00000421263 RIMBP3Q9UFD9 1639 aa34.15■■■■□ 3.06
VARS2-202ENST00000421263 CHD1O14646 1710 aa34.08■■■■□ 3.05
VARS2-202ENST00000421263 WDR97A6NE52 1622 aa34.08■■■■□ 3.05
VARS2-202ENST00000421263 ARHGEF11O15085 1522 aa34.07■■■■□ 3.04
VARS2-202ENST00000421263 FBLN2P98095 1184 aa34.03■■■■□ 3.04
VARS2-202ENST00000421263 SNAPC4Q5SXM2 1469 aa33.95■■■■□ 3.02
VARS2-202ENST00000421263 GRIN2BQ13224 1484 aa33.91■■■■□ 3.02
VARS2-202ENST00000421263 MAGI1Q96QZ7 1491 aaPredicted RBP33.89■■■■□ 3.02
VARS2-202ENST00000421263 CHMP7Q8WUX9 453 aaPredicted RBP33.85■■■■□ 3.01
VARS2-202ENST00000421263 CYB5RLQ6IPT4 315 aa33.84■■■■□ 3.01
VARS2-202ENST00000421263 ABCA10Q8WWZ4 1543 aa33.84■■■■□ 3.01
VARS2-202ENST00000421263 GAPVD1Q14C86 1478 aa33.82■■■■□ 3
VARS2-202ENST00000421263 SYNJ2O15056 1496 aa33.78■■■■□ 3
VARS2-202ENST00000421263 CLASP1Q7Z460 1538 aa33.76■■■■□ 3
VARS2-202ENST00000421263 ARAP1Q96P48 1450 aa33.76■■■□□ 2.99
VARS2-202ENST00000421263 ABCA5Q8WWZ7 1642 aa33.73■■■□□ 2.99
VARS2-202ENST00000421263 PBRM1Q86U86 1689 aa33.73■■■□□ 2.99
VARS2-202ENST00000421263 SYNJ1O43426 1573 aa33.72■■■□□ 2.99
VARS2-202ENST00000421263 WRNQ14191 1432 aaPredicted RBP eCLIP33.71■■■□□ 2.99
VARS2-202ENST00000421263 TOP2BQ02880 1626 aa33.68■■■□□ 2.98
VARS2-202ENST00000421263 BIVM-ERCC5R4GMW8 1640 aa33.67■■■□□ 2.98
VARS2-202ENST00000421263 GRIN2AQ12879 1464 aa33.47■■■□□ 2.95
VARS2-202ENST00000421263 ADAMTS12P58397 1594 aa33.44■■■□□ 2.94
VARS2-202ENST00000421263 FHAD1B1AJZ9 1412 aa33.41■■■□□ 2.94
VARS2-202ENST00000421263 ERICH3Q5RHP9 1530 aa33.4■■■□□ 2.94
VARS2-202ENST00000421263 NUP160Q12769 1436 aa33.38■■■□□ 2.93
VARS2-202ENST00000421263 TRHP20396 242 aaPredicted RBP33.36■■■□□ 2.93
VARS2-202ENST00000421263 CEP170Q5SW79 1584 aa33.34■■■□□ 2.93
VARS2-202ENST00000421263 ERCC6L2Q5T890 1561 aa33.24■■■□□ 2.91
VARS2-202ENST00000421263 SHROOM2Q13796 1616 aa33.2■■■□□ 2.9
VARS2-202ENST00000421263 JPH4Q96JJ6 628 aa33.08■■■□□ 2.89
VARS2-202ENST00000421263 IGF1RP08069 1367 aa33.07■■■□□ 2.88
VARS2-202ENST00000421263 KIF27Q86VH2 1401 aa33.02■■■□□ 2.88
VARS2-202ENST00000421263 PRG4Q92954 1404 aaPredicted RBP33.02■■■□□ 2.88
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms