Protein–RNA interactions for Protein: Q9Y2P8

RCL1, RNA 3'-terminal phosphate cyclase-like protein, humanhuman

Known RBP Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RCL1Q9Y2P8 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
RCL1Q9Y2P8 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RCL1Q9Y2P8 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
RCL1Q9Y2P8 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
RCL1Q9Y2P8 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RCL1Q9Y2P8 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RCL1Q9Y2P8 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC20.27■□□□□ 0.84
RCL1Q9Y2P8 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RCL1Q9Y2P8 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC20.27■□□□□ 0.83
RCL1Q9Y2P8 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
RCL1Q9Y2P8 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
RCL1Q9Y2P8 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC20.27■□□□□ 0.83
RCL1Q9Y2P8 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC20.26■□□□□ 0.83
RCL1Q9Y2P8 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RCL1Q9Y2P8 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RCL1Q9Y2P8 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
RCL1Q9Y2P8 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RCL1Q9Y2P8 SNAI3-AS1-204ENST00000567997 2048 ntBASIC20.26■□□□□ 0.83
RCL1Q9Y2P8 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC20.25■□□□□ 0.83
RCL1Q9Y2P8 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC20.25■□□□□ 0.83
RCL1Q9Y2P8 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
RCL1Q9Y2P8 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
RCL1Q9Y2P8 DENR-202ENST00000455982 1052 ntTSL 5 BASIC20.25■□□□□ 0.83
RCL1Q9Y2P8 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
RCL1Q9Y2P8 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC20.24■□□□□ 0.83
RCL1Q9Y2P8 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RCL1Q9Y2P8 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
RCL1Q9Y2P8 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RCL1Q9Y2P8 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC20.23■□□□□ 0.83
RCL1Q9Y2P8 MEST-211ENST00000437945 1455 ntTSL 5 BASIC20.23■□□□□ 0.83
RCL1Q9Y2P8 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RCL1Q9Y2P8 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RCL1Q9Y2P8 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RCL1Q9Y2P8 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RCL1Q9Y2P8 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC20.22■□□□□ 0.83
RCL1Q9Y2P8 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
RCL1Q9Y2P8 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
RCL1Q9Y2P8 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC20.21■□□□□ 0.83
RCL1Q9Y2P8 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC20.21■□□□□ 0.83
RCL1Q9Y2P8 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
RCL1Q9Y2P8 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
RCL1Q9Y2P8 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RCL1Q9Y2P8 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
RCL1Q9Y2P8 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
RCL1Q9Y2P8 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RCL1Q9Y2P8 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
RCL1Q9Y2P8 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RCL1Q9Y2P8 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
RCL1Q9Y2P8 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC20.19■□□□□ 0.82
RCL1Q9Y2P8 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RCL1Q9Y2P8 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
RCL1Q9Y2P8 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC20.19■□□□□ 0.82
RCL1Q9Y2P8 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
RCL1Q9Y2P8 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RCL1Q9Y2P8 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
RCL1Q9Y2P8 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
RCL1Q9Y2P8 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RCL1Q9Y2P8 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RCL1Q9Y2P8 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RCL1Q9Y2P8 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
RCL1Q9Y2P8 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RCL1Q9Y2P8 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RCL1Q9Y2P8 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
RCL1Q9Y2P8 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
RCL1Q9Y2P8 AP004609.3-201ENST00000610705 1884 ntBASIC20.16■□□□□ 0.82
RCL1Q9Y2P8 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC20.16■□□□□ 0.82
RCL1Q9Y2P8 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
RCL1Q9Y2P8 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
RCL1Q9Y2P8 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RCL1Q9Y2P8 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC20.15■□□□□ 0.82
RCL1Q9Y2P8 CEBPA-AS1-201ENST00000592982 2198 ntBASIC20.15■□□□□ 0.82
RCL1Q9Y2P8 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
RCL1Q9Y2P8 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC20.15■□□□□ 0.82
RCL1Q9Y2P8 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
RCL1Q9Y2P8 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
RCL1Q9Y2P8 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
RCL1Q9Y2P8 AC135983.2-203ENST00000454486 1613 ntBASIC20.13■□□□□ 0.81
RCL1Q9Y2P8 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RCL1Q9Y2P8 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RCL1Q9Y2P8 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
RCL1Q9Y2P8 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RCL1Q9Y2P8 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
RCL1Q9Y2P8 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
RCL1Q9Y2P8 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC20.12■□□□□ 0.81
RCL1Q9Y2P8 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RCL1Q9Y2P8 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
RCL1Q9Y2P8 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RCL1Q9Y2P8 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
RCL1Q9Y2P8 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RCL1Q9Y2P8 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC20.11■□□□□ 0.81
RCL1Q9Y2P8 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
RCL1Q9Y2P8 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
RCL1Q9Y2P8 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
RCL1Q9Y2P8 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
RCL1Q9Y2P8 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
RCL1Q9Y2P8 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
RCL1Q9Y2P8 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
RCL1Q9Y2P8 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
RCL1Q9Y2P8 LTK-203ENST00000453182 2412 ntTSL 2 BASIC20.1■□□□□ 0.81
RCL1Q9Y2P8 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms