RNA–Protein interactions for RNA: ENST00000308769.12

RFWD2-201, Transcript of E3 ubiquitin-protein ligase RFWD2, humanhuman

TSL 1 (best) BASIC

Gene RFWD2, Length 2,124 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFWD2-201ENST00000308769 NISCHQ9Y2I1 1504 aa52.81■■■■■ 6.04
RFWD2-201ENST00000308769 CCDC180Q9P1Z9 1646 aa45.61■■■■■ 4.89
RFWD2-201ENST00000308769 ZCCHC6Q5VYS8 1495 aaKnown RBP44.52■■■■■ 4.72
RFWD2-201ENST00000308769 SHROOM4Q9ULL8 1493 aa43.93■■■■■ 4.62
RFWD2-201ENST00000308769 DCAF8L2P0C7V8 631 aa43.62■■■■■ 4.57
RFWD2-201ENST00000308769 DCAF1Q9Y4B6 1507 aa43.5■■■■■ 4.55
RFWD2-201ENST00000308769 ABCC9O60706 1549 aa42.71■■■■■ 4.43
RFWD2-201ENST00000308769 MYO15BQ96JP2 1530 aa42.65■■■■■ 4.42
RFWD2-201ENST00000308769 SUPT5HO00267 1087 aaKnown RBP42.58■■■■■ 4.41
RFWD2-201ENST00000308769 SCRIBQ14160 1630 aa42.31■■■■■ 4.36
RFWD2-201ENST00000308769 NACADO15069 1562 aa42.29■■■■■ 4.36
RFWD2-201ENST00000308769 RB1CC1Q8TDY2 1594 aa41.8■■■■■ 4.28
RFWD2-201ENST00000308769 RSF1Q96T23 1441 aaPredicted RBP41.3■■■■■ 4.2
RFWD2-201ENST00000308769 UNC13AQ9UPW8 1703 aa41.23■■■■■ 4.19
RFWD2-201ENST00000308769 CECR2Q9BXF3 1484 aa41.12■■■■■ 4.17
RFWD2-201ENST00000308769 CHIC1Q5VXU3 224 aa41.03■■■■■ 4.16
RFWD2-201ENST00000308769 MROH2BQ7Z745 1585 aa40.94■■■■■ 4.14
RFWD2-201ENST00000308769 WIZO95785 1651 aa40.71■■■■■ 4.11
RFWD2-201ENST00000308769 BAZ1AQ9NRL2 1556 aaPredicted RBP40.69■■■■■ 4.1
RFWD2-201ENST00000308769 BICRAQ9NZM4 1560 aa40.64■■■■■ 4.1
RFWD2-201ENST00000308769 PABPN1Q86U42 306 aaKnown RBP eCLIP40.48■■■■■ 4.07
RFWD2-201ENST00000308769 SMARCA4P51532 1647 aa40.48■■■■■ 4.07
RFWD2-201ENST00000308769 TOP2AP11388 1531 aaKnown RBP40.13■■■■■ 4.01
RFWD2-201ENST00000308769 SMARCA2P51531 1590 aa39.85■■■■□ 3.97
RFWD2-201ENST00000308769 PEG3Q9GZU2 1588 aa39.84■■■■□ 3.97
RFWD2-201ENST00000308769 EIF4G1Q04637 1599 aaKnown RBP39.84■■■■□ 3.97
RFWD2-201ENST00000308769 TRIM41Q8WV44 630 aa39.83■■■■□ 3.97
RFWD2-201ENST00000308769 CCDC88BA6NC98 1476 aa39.81■■■■□ 3.96
RFWD2-201ENST00000308769 LOC105371045A0A1W2PR82 267 aa39.64■■■■□ 3.94
RFWD2-201ENST00000308769 ATAD2BQ9ULI0 1458 aa39.6■■■■□ 3.93
RFWD2-201ENST00000308769 BAZ1BQ9UIG0 1483 aaKnown RBP39.44■■■■□ 3.9
RFWD2-201ENST00000308769 ABCC8Q09428 1581 aa39.36■■■■□ 3.89
RFWD2-201ENST00000308769 FAM9AQ8IZU1 332 aaPredicted RBP39.32■■■■□ 3.88
RFWD2-201ENST00000308769 HMGXB3Q12766 1538 aa39.06■■■■□ 3.84
RFWD2-201ENST00000308769 NCAPD3P42695 1498 aa39.04■■■■□ 3.84
RFWD2-201ENST00000308769 EHMT2Q96KQ7 1210 aa38.9■■■■□ 3.82
RFWD2-201ENST00000308769 WRNQ14191 1432 aaPredicted RBP eCLIP38.85■■■■□ 3.81
RFWD2-201ENST00000308769 SYNJ1O43426 1573 aa38.75■■■■□ 3.79
RFWD2-201ENST00000308769 SOGA1O94964 1423 aa38.72■■■■□ 3.79
RFWD2-201ENST00000308769 CC2D2AQ9P2K1 1620 aa38.61■■■■□ 3.77
RFWD2-201ENST00000308769 PCGF6Q9BYE7 350 aa38.6■■■■□ 3.77
RFWD2-201ENST00000308769 RUSC2Q8N2Y8 1516 aa38.58■■■■□ 3.77
RFWD2-201ENST00000308769 EEA1Q15075 1411 aa38.53■■■■□ 3.76
RFWD2-201ENST00000308769 CFTRP13569 1480 aa38.44■■■■□ 3.74
RFWD2-201ENST00000308769 TOP2BQ02880 1626 aa38.43■■■■□ 3.74
RFWD2-201ENST00000308769 CSRNP3Q8WYN3 585 aa38.39■■■■□ 3.74
RFWD2-201ENST00000308769 BIVM-ERCC5R4GMW8 1640 aa38.38■■■■□ 3.73
RFWD2-201ENST00000308769 PRDM2Q13029 1718 aa38.35■■■■□ 3.73
RFWD2-201ENST00000308769 TRIM26Q12899 539 aaPredicted RBP38.24■■■■□ 3.71
RFWD2-201ENST00000308769 CUX1P39880 1505 aa38.21■■■■□ 3.71
RFWD2-201ENST00000308769 GOLGA3Q08378 1498 aa38.16■■■■□ 3.7
RFWD2-201ENST00000308769 TNIKQ9UKE5 1360 aa38.16■■■■□ 3.7
RFWD2-201ENST00000308769 CADPSQ9ULU8 1353 aa38.14■■■■□ 3.7
RFWD2-201ENST00000308769 CEP162Q5TB80 1403 aa38.12■■■■□ 3.69
RFWD2-201ENST00000308769 KIF21BO75037 1637 aa38.11■■■■□ 3.69
RFWD2-201ENST00000308769 CEP164Q9UPV0 1460 aa38.07■■■■□ 3.68
RFWD2-201ENST00000308769 UBTFP17480 764 aaKnown RBP38.06■■■■□ 3.68
RFWD2-201ENST00000308769 HRCP23327 699 aa37.99■■■■□ 3.67
RFWD2-201ENST00000308769 RAPGEF2Q9Y4G8 1499 aa37.88■■■■□ 3.65
RFWD2-201ENST00000308769 PPARGC1BQ86YN6 1023 aaKnown RBP37.83■■■■□ 3.65
RFWD2-201ENST00000308769 FANCD2Q9BXW9 1451 aa37.79■■■■□ 3.64
RFWD2-201ENST00000308769 NESP48681 1621 aa37.77■■■■□ 3.64
RFWD2-201ENST00000308769 KIF27Q86VH2 1401 aa37.75■■■■□ 3.63
RFWD2-201ENST00000308769 PRXQ9BXM0 1461 aa37.7■■■■□ 3.63
RFWD2-201ENST00000308769 ERICH3Q5RHP9 1530 aa37.68■■■■□ 3.62
RFWD2-201ENST00000308769 FGD5Q6ZNL6 1462 aa37.66■■■■□ 3.62
RFWD2-201ENST00000308769 CLIP1P30622 1438 aa37.62■■■■□ 3.61
RFWD2-201ENST00000308769 LAMC3Q9Y6N6 1575 aa37.62■■■■□ 3.61
RFWD2-201ENST00000308769 DNAJC5BQ9UF47 199 aa37.6■■■■□ 3.61
RFWD2-201ENST00000308769 CUX2O14529 1486 aa37.57■■■■□ 3.6
RFWD2-201ENST00000308769 DNMBPQ6XZF7 1577 aa37.55■■■■□ 3.6
RFWD2-201ENST00000308769 TOPBP1Q92547 1522 aa37.47■■■■□ 3.59
RFWD2-201ENST00000308769 RANGAP1P46060 587 aaPredicted RBP37.42■■■■□ 3.58
RFWD2-201ENST00000308769 TTBK1Q5TCY1 1321 aaPredicted RBP37.41■■■■□ 3.58
RFWD2-201ENST00000308769 VPS8Q8N3P4 1428 aa37.37■■■■□ 3.57
RFWD2-201ENST00000308769 IGF1RP08069 1367 aa37.37■■■■□ 3.57
RFWD2-201ENST00000308769 POLA1P09884 1462 aaPredicted RBP37.37■■■■□ 3.57
RFWD2-201ENST00000308769 RAD54L2Q9Y4B4 1467 aa37.33■■■■□ 3.57
RFWD2-201ENST00000308769 URB2Q14146 1524 aaKnown RBP37.32■■■■□ 3.56
RFWD2-201ENST00000308769 KIF21AQ7Z4S6 1674 aa37.3■■■■□ 3.56
RFWD2-201ENST00000308769 PDS5BQ9NTI5 1447 aa37.29■■■■□ 3.56
RFWD2-201ENST00000308769 ABCA10Q8WWZ4 1543 aa37.27■■■■□ 3.56
RFWD2-201ENST00000308769 CARMIL1Q5VZK9 1371 aa37.2■■■■□ 3.55
RFWD2-201ENST00000308769 ARAP1Q96P48 1450 aa37.19■■■■□ 3.54
RFWD2-201ENST00000308769 WDR97A6NE52 1622 aa37.15■■■■□ 3.54
RFWD2-201ENST00000308769 ARHGAP35Q9NRY4 1499 aa37.04■■■■□ 3.52
RFWD2-201ENST00000308769 APLP2Q06481 763 aa37■■■■□ 3.51
RFWD2-201ENST00000308769 CUL7Q14999 1698 aa36.98■■■■□ 3.51
RFWD2-201ENST00000308769 ZEB1P37275 1124 aaPredicted RBP36.97■■■■□ 3.51
RFWD2-201ENST00000308769 ABCA5Q8WWZ7 1642 aa36.96■■■■□ 3.51
RFWD2-201ENST00000308769 TDRD9Q8NDG6 1382 aaKnown RBP36.89■■■■□ 3.5
RFWD2-201ENST00000308769 TARBP1Q13395 1621 aaKnown RBP36.86■■■■□ 3.49
RFWD2-201ENST00000308769 GAPVD1Q14C86 1478 aa36.82■■■■□ 3.49
RFWD2-201ENST00000308769 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP36.82■■■■□ 3.49
RFWD2-201ENST00000308769 MRC2Q9UBG0 1479 aa36.81■■■■□ 3.48
RFWD2-201ENST00000308769 CTTNBP2Q8WZ74 1663 aa36.78■■■■□ 3.48
RFWD2-201ENST00000308769 KANK4Q5T7N3 995 aaPredicted RBP36.68■■■■□ 3.46
RFWD2-201ENST00000308769 CCER1Q8TC90 406 aaPredicted RBP36.68■■■■□ 3.46
RFWD2-201ENST00000308769 PBRM1Q86U86 1689 aa36.64■■■■□ 3.46
RFWD2-201ENST00000308769 WDR62O43379 1518 aa36.59■■■■□ 3.45
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms