RNA–Protein interactions for RNA: ENST00000610970.1

HOXA4-204, Transcript of homeobox A4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXA4, Length 1,728 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4-204ENST00000610970 NISCHQ9Y2I1 1504 aa51.32■■■■■ 5.81
HOXA4-204ENST00000610970 CCDC180Q9P1Z9 1646 aa44.28■■■■■ 4.68
HOXA4-204ENST00000610970 ZCCHC6Q5VYS8 1495 aaKnown RBP43.31■■■■■ 4.52
HOXA4-204ENST00000610970 SHROOM4Q9ULL8 1493 aa42.52■■■■■ 4.4
HOXA4-204ENST00000610970 DCAF1Q9Y4B6 1507 aa42.49■■■■■ 4.39
HOXA4-204ENST00000610970 ABCC9O60706 1549 aa42.08■■■■■ 4.33
HOXA4-204ENST00000610970 DCAF8L2P0C7V8 631 aa41.99■■■■■ 4.31
HOXA4-204ENST00000610970 MYO15BQ96JP2 1530 aa41.6■■■■■ 4.25
HOXA4-204ENST00000610970 SUPT5HO00267 1087 aaKnown RBP41.48■■■■■ 4.23
HOXA4-204ENST00000610970 NACADO15069 1562 aa41■■■■■ 4.15
HOXA4-204ENST00000610970 SCRIBQ14160 1630 aa40.8■■■■■ 4.12
HOXA4-204ENST00000610970 RB1CC1Q8TDY2 1594 aa40.68■■■■■ 4.1
HOXA4-204ENST00000610970 CHIC1Q5VXU3 224 aa40.31■■■■■ 4.04
HOXA4-204ENST00000610970 RSF1Q96T23 1441 aaPredicted RBP40.21■■■■■ 4.03
HOXA4-204ENST00000610970 UNC13AQ9UPW8 1703 aa39.85■■■■□ 3.97
HOXA4-204ENST00000610970 CECR2Q9BXF3 1484 aa39.74■■■■□ 3.95
HOXA4-204ENST00000610970 MROH2BQ7Z745 1585 aa39.65■■■■□ 3.94
HOXA4-204ENST00000610970 BAZ1AQ9NRL2 1556 aaPredicted RBP39.56■■■■□ 3.92
HOXA4-204ENST00000610970 BICRAQ9NZM4 1560 aa39.51■■■■□ 3.92
HOXA4-204ENST00000610970 PABPN1Q86U42 306 aaKnown RBP eCLIP39.4■■■■□ 3.9
HOXA4-204ENST00000610970 WIZO95785 1651 aa39.39■■■■□ 3.9
HOXA4-204ENST00000610970 SMARCA4P51532 1647 aa39.22■■■■□ 3.87
HOXA4-204ENST00000610970 TOP2AP11388 1531 aaKnown RBP39.04■■■■□ 3.84
HOXA4-204ENST00000610970 TRIM41Q8WV44 630 aa38.98■■■■□ 3.83
HOXA4-204ENST00000610970 EIF4G1Q04637 1599 aaKnown RBP38.8■■■■□ 3.8
HOXA4-204ENST00000610970 DNAJC5BQ9UF47 199 aa38.78■■■■□ 3.8
HOXA4-204ENST00000610970 LOC105371045A0A1W2PR82 267 aa38.76■■■■□ 3.8
HOXA4-204ENST00000610970 PEG3Q9GZU2 1588 aa38.72■■■■□ 3.79
HOXA4-204ENST00000610970 SMARCA2P51531 1590 aa38.69■■■■□ 3.78
HOXA4-204ENST00000610970 CCDC88BA6NC98 1476 aa38.65■■■■□ 3.78
HOXA4-204ENST00000610970 ATAD2BQ9ULI0 1458 aa38.31■■■■□ 3.72
HOXA4-204ENST00000610970 FAM9AQ8IZU1 332 aaPredicted RBP38.22■■■■□ 3.71
HOXA4-204ENST00000610970 BAZ1BQ9UIG0 1483 aaKnown RBP38.16■■■■□ 3.7
HOXA4-204ENST00000610970 PCGF6Q9BYE7 350 aa38.13■■■■□ 3.69
HOXA4-204ENST00000610970 ABCC8Q09428 1581 aa38.13■■■■□ 3.69
HOXA4-204ENST00000610970 CC2D2AQ9P2K1 1620 aa38.03■■■■□ 3.68
HOXA4-204ENST00000610970 HRCP23327 699 aa37.97■■■■□ 3.67
HOXA4-204ENST00000610970 TRIM26Q12899 539 aaPredicted RBP37.95■■■■□ 3.67
HOXA4-204ENST00000610970 EEA1Q15075 1411 aa37.93■■■■□ 3.66
HOXA4-204ENST00000610970 HMGXB3Q12766 1538 aa37.86■■■■□ 3.65
HOXA4-204ENST00000610970 NCAPD3P42695 1498 aa37.83■■■■□ 3.65
HOXA4-204ENST00000610970 WRNQ14191 1432 aaPredicted RBP eCLIP37.82■■■■□ 3.65
HOXA4-204ENST00000610970 SOGA1O94964 1423 aa37.66■■■■□ 3.62
HOXA4-204ENST00000610970 SYNJ1O43426 1573 aa37.59■■■■□ 3.61
HOXA4-204ENST00000610970 EHMT2Q96KQ7 1210 aa37.58■■■■□ 3.61
HOXA4-204ENST00000610970 CSRNP3Q8WYN3 585 aa37.56■■■■□ 3.6
HOXA4-204ENST00000610970 TNIKQ9UKE5 1360 aa37.5■■■■□ 3.59
HOXA4-204ENST00000610970 RUSC2Q8N2Y8 1516 aa37.43■■■■□ 3.58
HOXA4-204ENST00000610970 TOP2BQ02880 1626 aa37.4■■■■□ 3.58
HOXA4-204ENST00000610970 GOLGA3Q08378 1498 aa37.39■■■■□ 3.58
HOXA4-204ENST00000610970 BIVM-ERCC5R4GMW8 1640 aa37.35■■■■□ 3.57
HOXA4-204ENST00000610970 CEP162Q5TB80 1403 aa37.33■■■■□ 3.57
HOXA4-204ENST00000610970 KIF21BO75037 1637 aa37.32■■■■□ 3.57
HOXA4-204ENST00000610970 CEP164Q9UPV0 1460 aa37.29■■■■□ 3.56
HOXA4-204ENST00000610970 CFTRP13569 1480 aa37.27■■■■□ 3.56
HOXA4-204ENST00000610970 PRDM2Q13029 1718 aa37.17■■■■□ 3.54
HOXA4-204ENST00000610970 UBTFP17480 764 aaKnown RBP37.15■■■■□ 3.54
HOXA4-204ENST00000610970 ZEB1P37275 1124 aaPredicted RBP37.08■■■■□ 3.53
HOXA4-204ENST00000610970 CUX1P39880 1505 aa37.02■■■■□ 3.52
HOXA4-204ENST00000610970 CADPSQ9ULU8 1353 aa36.93■■■■□ 3.5
HOXA4-204ENST00000610970 ERICH3Q5RHP9 1530 aa36.89■■■■□ 3.5
HOXA4-204ENST00000610970 RAPGEF2Q9Y4G8 1499 aa36.85■■■■□ 3.49
HOXA4-204ENST00000610970 CLIP1P30622 1438 aa36.81■■■■□ 3.48
HOXA4-204ENST00000610970 PRXQ9BXM0 1461 aa36.8■■■■□ 3.48
HOXA4-204ENST00000610970 KIF27Q86VH2 1401 aa36.8■■■■□ 3.48
HOXA4-204ENST00000610970 PPARGC1BQ86YN6 1023 aaKnown RBP36.79■■■■□ 3.48
HOXA4-204ENST00000610970 VPS8Q8N3P4 1428 aa36.66■■■■□ 3.46
HOXA4-204ENST00000610970 NESP48681 1621 aa36.63■■■■□ 3.46
HOXA4-204ENST00000610970 LAMC3Q9Y6N6 1575 aa36.56■■■■□ 3.44
HOXA4-204ENST00000610970 FANCD2Q9BXW9 1451 aa36.51■■■■□ 3.43
HOXA4-204ENST00000610970 FGD5Q6ZNL6 1462 aa36.45■■■■□ 3.43
HOXA4-204ENST00000610970 CUX2O14529 1486 aa36.42■■■■□ 3.42
HOXA4-204ENST00000610970 DNMBPQ6XZF7 1577 aa36.39■■■■□ 3.42
HOXA4-204ENST00000610970 APLP2Q06481 763 aa36.37■■■■□ 3.41
HOXA4-204ENST00000610970 IGF1RP08069 1367 aa36.35■■■■□ 3.41
HOXA4-204ENST00000610970 ARAP1Q96P48 1450 aa36.29■■■■□ 3.4
HOXA4-204ENST00000610970 PDS5BQ9NTI5 1447 aa36.29■■■■□ 3.4
HOXA4-204ENST00000610970 TTBK1Q5TCY1 1321 aaPredicted RBP36.27■■■■□ 3.4
HOXA4-204ENST00000610970 CCER1Q8TC90 406 aaPredicted RBP36.24■■■■□ 3.39
HOXA4-204ENST00000610970 TOPBP1Q92547 1522 aa36.23■■■■□ 3.39
HOXA4-204ENST00000610970 ERCC6Q03468 1493 aa36.22■■■■□ 3.39
HOXA4-204ENST00000610970 CARMIL1Q5VZK9 1371 aa36.19■■■■□ 3.38
HOXA4-204ENST00000610970 ABCA10Q8WWZ4 1543 aa36.19■■■■□ 3.38
HOXA4-204ENST00000610970 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP36.19■■■■□ 3.38
HOXA4-204ENST00000610970 KIF21AQ7Z4S6 1674 aa36.16■■■■□ 3.38
HOXA4-204ENST00000610970 RANGAP1P46060 587 aaPredicted RBP36.14■■■■□ 3.38
HOXA4-204ENST00000610970 POLA1P09884 1462 aaPredicted RBP36.12■■■■□ 3.37
HOXA4-204ENST00000610970 ARHGAP35Q9NRY4 1499 aa36.1■■■■□ 3.37
HOXA4-204ENST00000610970 CUL7Q14999 1698 aa36■■■■□ 3.35
HOXA4-204ENST00000610970 RAD54L2Q9Y4B4 1467 aa35.99■■■■□ 3.35
HOXA4-204ENST00000610970 URB2Q14146 1524 aaKnown RBP35.97■■■■□ 3.35
HOXA4-204ENST00000610970 WDR97A6NE52 1622 aa35.95■■■■□ 3.35
HOXA4-204ENST00000610970 MAP3K1Q13233 1512 aa35.9■■■■□ 3.34
HOXA4-204ENST00000610970 MRC2Q9UBG0 1479 aa35.87■■■■□ 3.33
HOXA4-204ENST00000610970 THOC2Q8NI27 1593 aaKnown RBP35.81■■■■□ 3.32
HOXA4-204ENST00000610970 ABCA5Q8WWZ7 1642 aa35.79■■■■□ 3.32
HOXA4-204ENST00000610970 HNRNPUL2Q1KMD3 747 aaKnown RBP35.78■■■■□ 3.32
HOXA4-204ENST00000610970 FHAD1B1AJZ9 1412 aa35.77■■■■□ 3.32
HOXA4-204ENST00000610970 EFCAB5A4FU69 1503 aa35.76■■■■□ 3.31
HOXA4-204ENST00000610970 KANK4Q5T7N3 995 aaPredicted RBP35.75■■■■□ 3.31
Retrieved 100 of 20,778 RNA–protein pairs in 164 ms