Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 DHX9-202ENST00000473076 1378 ntTSL 1 (best)16.23■□□□□ 0.197e-9■■□□□ 13.5
YBX3P16989 GALM-203ENST00000427858 597 ntTSL 420.94■□□□□ 0.942e-6■■□□□ 13.5
YBX3P16989 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC24.95■■□□□ 1.585e-7■■□□□ 13.5
YBX3P16989 PSMA5-203ENST00000484563 1503 ntTSL 222■■□□□ 1.113e-11■■□□□ 13.5
YBX3P16989 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.793e-11■■□□□ 13.5
YBX3P16989 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.51e-9■■□□□ 13.5
YBX3P16989 JPT1-201ENST00000304834 1633 ntTSL 1 (best)21.37■■□□□ 1.011e-9■■□□□ 13.5
YBX3P16989 JPT1-202ENST00000356033 1519 ntTSL 1 (best) BASIC18.05■□□□□ 0.481e-9■■□□□ 13.5
YBX3P16989 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.331e-8■■□□□ 13.5
YBX3P16989 HEG1-205ENST00000487661 3973 ntTSL 1 (best)9.01□□□□□ -0.971e-8■■□□□ 13.5
YBX3P16989 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC22.82■■□□□ 1.244e-8■■□□□ 13.5
YBX3P16989 RER1-203ENST00000378513 3000 ntTSL 3 BASIC15.69■□□□□ 0.14e-8■■□□□ 13.5
YBX3P16989 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.064e-8■■□□□ 13.5
YBX3P16989 MRPL9-211ENST00000495867 403 ntTSL 25.44□□□□□ -1.541e-8■■□□□ 13.5
YBX3P16989 PGM3-201ENST00000283977 2219 ntTSL 5 BASIC14.39□□□□□ -0.112e-6■■□□□ 13.5
YBX3P16989 PGM3-211ENST00000512866 2013 ntTSL 1 (best) BASIC9.53□□□□□ -0.882e-6■■□□□ 13.5
YBX3P16989 PGM3-212ENST00000513973 6107 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.152e-6■■□□□ 13.5
YBX3P16989 PGM3-203ENST00000504780 605 ntTSL 37.82□□□□□ -1.162e-6■■□□□ 13.5
YBX3P16989 PGM3-215ENST00000616566 5905 ntTSL 2 BASIC6.46□□□□□ -1.382e-6■■□□□ 13.5
YBX3P16989 EIF4G1-227ENST00000455679 542 ntTSL 418.81■□□□□ 0.68e-11■■□□□ 13.5
YBX3P16989 CAPZA2-201ENST00000361183 5182 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.628e-10■■□□□ 13.5
YBX3P16989 CAPZA2-204ENST00000426421 1214 ntTSL 55.6□□□□□ -1.518e-10■■□□□ 13.5
YBX3P16989 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC27.03■■□□□ 1.923e-15■■□□□ 13.5
YBX3P16989 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.983e-15■■□□□ 13.5
YBX3P16989 UBB-207ENST00000578649 477 ntTSL 517.44■□□□□ 0.383e-15■■□□□ 13.5
YBX3P16989 UBB-205ENST00000577640 724 ntTSL 514.42□□□□□ -0.13e-15■■□□□ 13.5
YBX3P16989 UBB-202ENST00000395837 1014 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.233e-15■■□□□ 13.5
YBX3P16989 UBB-204ENST00000535788 704 ntTSL 2 BASIC12.62□□□□□ -0.393e-15■■□□□ 13.5
YBX3P16989 UBB-209ENST00000614404 1056 ntAPPRIS P1 TSL 3 BASIC11.42□□□□□ -0.583e-15■■□□□ 13.5
YBX3P16989 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.49e-8■■□□□ 13.5
YBX3P16989 EZR-201ENST00000337147 3068 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.089e-8■■□□□ 13.5
YBX3P16989 EZR-203ENST00000392177 2933 ntAPPRIS ALT1 TSL 5 BASIC12.4□□□□□ -0.429e-8■■□□□ 13.5
YBX3P16989 RPL19-208ENST00000585199 402 ntTSL 214.79□□□□□ -0.044e-81■■□□□ 13.5
YBX3P16989 ZMYM4-201ENST00000314607 6994 ntAPPRIS P1 TSL 2 BASIC7.65□□□□□ -1.183e-6■■□□□ 13.5
YBX3P16989 ZMYM4-203ENST00000457946 6003 ntTSL 56.06□□□□□ -1.443e-6■■□□□ 13.5
YBX3P16989 HYOU1-201ENST00000526354 568 ntTSL 229.66■■■□□ 2.343e-14■■□□□ 13.5
YBX3P16989 HYOU1-206ENST00000530467 552 ntTSL 427.36■■□□□ 1.973e-14■■□□□ 13.5
YBX3P16989 HYOU1-216ENST00000610597 491 ntTSL 420.38■□□□□ 0.853e-14■■□□□ 13.5
YBX3P16989 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC20.48■□□□□ 0.872e-8■■□□□ 13.5
YBX3P16989 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC14.92□□□□□ -0.022e-8■■□□□ 13.5
YBX3P16989 HDAC2-205ENST00000519065 9874 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.592e-8■■□□□ 13.5
YBX3P16989 HDAC2-208ENST00000520746 497 ntTSL 37.4□□□□□ -1.222e-8■■□□□ 13.5
YBX3P16989 HDAC2-215ENST00000523334 4810 ntTSL 24.15□□□□□ -1.752e-8■■□□□ 13.5
YBX3P16989 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.622e-7■■□□□ 13.5
YBX3P16989 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.187e-7■■□□□ 13.5
YBX3P16989 NRIP1-202ENST00000400199 7562 ntAPPRIS P1 TSL 3 BASIC10.92□□□□□ -0.667e-7■■□□□ 13.5
YBX3P16989 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC5.9□□□□□ -1.467e-7■■□□□ 13.5
YBX3P16989 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC5.49□□□□□ -1.537e-7■■□□□ 13.5
YBX3P16989 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC25.32■■□□□ 1.642e-6■■□□□ 13.5
YBX3P16989 HSD17B12-211ENST00000636007 563 ntTSL 422.77■■□□□ 1.242e-6■■□□□ 13.5
YBX3P16989 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.52e-6■■□□□ 13.5
YBX3P16989 HSD17B12-210ENST00000534053 583 ntTSL 29.22□□□□□ -0.932e-6■■□□□ 13.5
YBX3P16989 HSD17B12-209ENST00000533802 511 ntTSL 36.37□□□□□ -1.392e-6■■□□□ 13.5
YBX3P16989 HSD17B12-208ENST00000533090 2507 ntTSL 25.28□□□□□ -1.562e-6■■□□□ 13.5
YBX3P16989 SLC45A4-205ENST00000520137 835 ntTSL 325.16■■□□□ 1.621e-6■■□□□ 13.5
YBX3P16989 SLC45A4-206ENST00000521804 726 ntTSL 324.71■■□□□ 1.551e-6■■□□□ 13.5
YBX3P16989 DSP-202ENST00000418664 7812 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.574e-9■■□□□ 13.5
YBX3P16989 DSP-201ENST00000379802 9796 ntAPPRIS P3 TSL 1 (best) BASIC10.27□□□□□ -0.764e-9■■□□□ 13.5
YBX3P16989 NCKAP1L-202ENST00000545638 3612 ntTSL 2 BASIC10.1□□□□□ -0.796e-6■■□□□ 13.5
YBX3P16989 NCKAP1L-201ENST00000293373 9016 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.126e-6■■□□□ 13.5
YBX3P16989 NCKAP1L-204ENST00000548221 3559 ntTSL 25.78□□□□□ -1.486e-6■■□□□ 13.5
YBX3P16989 F2R-201ENST00000319211 3821 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.522e-6■■□□□ 13.5
YBX3P16989 GAS5-215ENST00000442067 1114 ntTSL 25.81□□□□□ -1.481e-25■■□□□ 13.5
YBX3P16989 SRRT-218ENST00000620394 582 ntTSL 230.63■■■□□ 2.494e-11■■□□□ 13.5
YBX3P16989 SRRT-214ENST00000614370 556 ntTSL 219.57■□□□□ 0.724e-11■■□□□ 13.5
YBX3P16989 MYO19-214ENST00000615902 559 ntTSL 315.07■□□□□ 04e-11■■□□□ 13.5
YBX3P16989 MYO19-206ENST00000611125 557 ntTSL 313.7□□□□□ -0.224e-11■■□□□ 13.5
YBX3P16989 SEC11A-206ENST00000558924 3626 ntTSL 1 (best)12.37□□□□□ -0.434e-11■■□□□ 13.5
YBX3P16989 SEC11A-207ENST00000559376 2204 nt10.57□□□□□ -0.724e-11■■□□□ 13.5
YBX3P16989 MYO19-207ENST00000611622 4226 ntTSL 1 (best)10.27□□□□□ -0.774e-11■■□□□ 13.5
YBX3P16989 FP671120.1-201ENST00000623664 2498 ntTSL 2 BASIC16.38■□□□□ 0.217e-9■■□□□ 13.5
YBX3P16989 CAPZB-209ENST00000489607 488 ntTSL 520.13■□□□□ 0.817e-10■■□□□ 13.5
YBX3P16989 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.138e-7■■□□□ 13.5
YBX3P16989 CACYBP-209ENST00000613570 2835 ntTSL 2 BASIC8.87□□□□□ -0.998e-7■■□□□ 13.5
YBX3P16989 RPS24-206ENST00000465692 778 ntTSL 215.11■□□□□ 0.013e-34■■□□□ 13.5
YBX3P16989 RPS24-212ENST00000482069 539 ntTSL 315.05■□□□□ -03e-34■■□□□ 13.5
YBX3P16989 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.184e-6■■□□□ 13.5
YBX3P16989 CNN2-208ENST00000566695 828 ntTSL 215.75■□□□□ 0.116e-7■■□□□ 13.5
YBX3P16989 FXYD5-203ENST00000392218 763 ntTSL 3 BASIC13.13□□□□□ -0.312e-17■■□□□ 13.5
YBX3P16989 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.352e-8■■□□□ 13.5
YBX3P16989 MCM4-215ENST00000523944 4105 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.312e-8■■□□□ 13.5
YBX3P16989 CNN2-211ENST00000606983 537 ntTSL 313.8□□□□□ -0.22e-7■■□□□ 13.5
YBX3P16989 SKP1-206ENST00000519321 692 ntTSL 328.64■■■□□ 2.181e-12■■□□□ 13.5
YBX3P16989 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC7.18□□□□□ -1.261e-12■■□□□ 13.5
YBX3P16989 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC6.39□□□□□ -1.391e-12■■□□□ 13.5
YBX3P16989 SKP1-201ENST00000328392 572 ntTSL 55.92□□□□□ -1.461e-12■■□□□ 13.5
YBX3P16989 SKP1-205ENST00000519054 654 ntTSL 35.81□□□□□ -1.481e-12■■□□□ 13.5
YBX3P16989 SKP1-212ENST00000523966 899 ntTSL 35.27□□□□□ -1.571e-12■■□□□ 13.5
YBX3P16989 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC4.86□□□□□ -1.631e-12■■□□□ 13.5
YBX3P16989 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC4.73□□□□□ -1.651e-12■■□□□ 13.5
YBX3P16989 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC17.6■□□□□ 0.411e-9■■□□□ 13.5
YBX3P16989 EIF3L-201ENST00000381683 1599 ntTSL 2 BASIC13.58□□□□□ -0.241e-9■■□□□ 13.5
YBX3P16989 EIF3L-214ENST00000624234 2091 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.51e-9■■□□□ 13.5
YBX3P16989 EIF3L-203ENST00000412331 3220 ntTSL 1 (best) BASIC7.74□□□□□ -1.171e-9■■□□□ 13.5
YBX3P16989 EIF3L-212ENST00000477256 1708 ntTSL 57.66□□□□□ -1.181e-9■■□□□ 13.5
YBX3P16989 MAP1B-203ENST00000504492 2079 ntTSL 1 (best)6.48□□□□□ -1.371e-6■■□□□ 13.4
YBX3P16989 KIAA1191-207ENST00000506668 741 ntTSL 217.08■□□□□ 0.322e-7■■□□□ 13.4
YBX3P16989 KIAA1191-205ENST00000504688 486 ntTSL 515.86■□□□□ 0.132e-7■■□□□ 13.4
YBX3P16989 KIAA1191-208ENST00000506983 512 ntTSL 214.76□□□□□ -0.052e-7■■□□□ 13.4
YBX3P16989 KIAA1191-204ENST00000503082 639 ntTSL 214.55□□□□□ -0.082e-7■■□□□ 13.4
Retrieved 100 of 29,075 protein–RNA pairs in 283.7 ms