RNA–Protein interactions for RNA: ENST00000519054.5

SKP1-205, Transcript of S-phase kinase associated protein 1, humanhuman

TSL 3

Gene SKP1, Length 654 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-205ENST00000519054 AEBP2Q6ZN18 517 aaPredicted RBP21.34■■□□□ 1.01
SKP1-205ENST00000519054 CHIC1Q5VXU3 224 aa20.76■□□□□ 0.91
SKP1-205ENST00000519054 PHF23Q9BUL5 403 aaPredicted RBP18.27■□□□□ 0.52
SKP1-205ENST00000519054 SENP3Q9H4L4 574 aaPredicted RBP18.09■□□□□ 0.49
SKP1-205ENST00000519054 PLPPR3Q6T4P5 718 aa16.83■□□□□ 0.28
SKP1-205ENST00000519054 FOXD1Q16676 465 aa16.82■□□□□ 0.28
SKP1-205ENST00000519054 PPP6R1Q9UPN7 881 aa16.15■□□□□ 0.18
SKP1-205ENST00000519054 ADRA2BP18089 450 aa16.14■□□□□ 0.17
SKP1-205ENST00000519054 PIAS4Q8N2W9 510 aaPredicted RBP15.86■□□□□ 0.13
SKP1-205ENST00000519054 MSH5O43196 834 aa15.51■□□□□ 0.07
SKP1-205ENST00000519054 PPP4R3CPQ6ZMV5 832 aa14.84□□□□□ -0.03
SKP1-205ENST00000519054 SCAF1Q9H7N4 1312 aaKnown RBP14.73□□□□□ -0.05
SKP1-205ENST00000519054 MAPK8IP2Q13387 824 aaPredicted RBP14.67□□□□□ -0.06
SKP1-205ENST00000519054 KCNA4P22459 653 aa14.45□□□□□ -0.1
SKP1-205ENST00000519054 DMRT2Q9Y5R5 561 aa14.43□□□□□ -0.1
SKP1-205ENST00000519054 NCBP3Q53F19 620 aaKnown RBP14.42□□□□□ -0.1
SKP1-205ENST00000519054 CNKSR2Q8WXI2 1034 aa14.42□□□□□ -0.1
SKP1-205ENST00000519054 POTEDQ86YR6 584 aa14.25□□□□□ -0.13
SKP1-205ENST00000519054 NPM3O75607 178 aaKnown RBP14.23□□□□□ -0.13
SKP1-205ENST00000519054 RNF216Q9NWF9 866 aaPredicted RBP14.15□□□□□ -0.14
SKP1-205ENST00000519054 HOXD11P31277 338 aaPredicted RBP14.1□□□□□ -0.15
SKP1-205ENST00000519054 DCAF8L1A6NGE4 600 aa13.88□□□□□ -0.19
SKP1-205ENST00000519054 SLC4A1APQ9BWU0 796 aaKnown RBP13.75□□□□□ -0.21
SKP1-205ENST00000519054 DNAJC5BQ9UF47 199 aa13.74□□□□□ -0.21
SKP1-205ENST00000519054 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.48□□□□□ -0.251e-7■■■□□ 17.9
SKP1-205ENST00000519054 SLC4A2P04920 1241 aa13.45□□□□□ -0.26
SKP1-205ENST00000519054 EHMT2Q96KQ7 1210 aa13.33□□□□□ -0.28
SKP1-205ENST00000519054 ZBTB22O15209 634 aa13.3□□□□□ -0.28
SKP1-205ENST00000519054 FOXD4L1Q9NU39 408 aa13.3□□□□□ -0.28
SKP1-205ENST00000519054 RNF39Q9H2S5 420 aa13.29□□□□□ -0.28
SKP1-205ENST00000519054 U3KPZ7 1027 aaPredicted RBP13.24□□□□□ -0.29
SKP1-205ENST00000519054 CSRNP3Q8WYN3 585 aa13.16□□□□□ -0.3
SKP1-205ENST00000519054 MYCNP04198 464 aaPredicted RBP13.13□□□□□ -0.31
SKP1-205ENST00000519054 C1QBPQ07021 282 aaKnown RBP13.12□□□□□ -0.31
SKP1-205ENST00000519054 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.02□□□□□ -0.33
SKP1-205ENST00000519054 HNRNPUL2Q1KMD3 747 aaKnown RBP13.02□□□□□ -0.33
SKP1-205ENST00000519054 CACNB1Q02641 598 aaPredicted RBP13.01□□□□□ -0.33
SKP1-205ENST00000519054 SAMD1Q6SPF0 538 aaPredicted RBP12.99□□□□□ -0.33
SKP1-205ENST00000519054 APLP2Q06481 763 aa12.91□□□□□ -0.34
SKP1-205ENST00000519054 SPINK5Q9NQ38 1064 aaPredicted RBP12.91□□□□□ -0.34
SKP1-205ENST00000519054 CAPN15O75808 1086 aa12.87□□□□□ -0.35
SKP1-205ENST00000519054 ATF5Q9Y2D1 282 aaPredicted RBP12.82□□□□□ -0.36
SKP1-205ENST00000519054 ATXN8OSP0DMR3 200 aa12.81□□□□□ -0.36
SKP1-205ENST00000519054 TRHP20396 242 aaPredicted RBP12.8□□□□□ -0.36
SKP1-205ENST00000519054 ZNF219Q9P2Y4 722 aaPredicted RBP12.75□□□□□ -0.37
SKP1-205ENST00000519054 DSG3P32926 999 aa12.64□□□□□ -0.39
SKP1-205ENST00000519054 ABCB7O75027 752 aa12.63□□□□□ -0.39
SKP1-205ENST00000519054 POLA2Q14181 598 aa12.56□□□□□ -0.4
SKP1-205ENST00000519054 ZBTB12Q9Y330 459 aaPredicted RBP12.31□□□□□ -0.44
SKP1-205ENST00000519054 FBLN2P98095 1184 aa12.27□□□□□ -0.45
SKP1-205ENST00000519054 MKRN4PQ13434 485 aaPredicted RBP12.25□□□□□ -0.45
SKP1-205ENST00000519054 OSCARQ8IYS5 282 aa12.15□□□□□ -0.46
SKP1-205ENST00000519054 RBM42Q9BTD8 480 aaKnown RBP12.03□□□□□ -0.48
SKP1-205ENST00000519054 SPDYE2BA6NHP3 402 aa11.98□□□□□ -0.49
SKP1-205ENST00000519054 SPDYE6P0CI01 402 aa11.98□□□□□ -0.49
SKP1-205ENST00000519054 SPDYE2Q495Y8 402 aa11.98□□□□□ -0.49
SKP1-205ENST00000519054 SPDYE4A6NLX3 237 aa11.95□□□□□ -0.5
SKP1-205ENST00000519054 ZNF692Q9BU19 519 aaPredicted RBP11.95□□□□□ -0.5
SKP1-205ENST00000519054 FKBP8Q14318 412 aa11.92□□□□□ -0.5
SKP1-205ENST00000519054 SSUH2Q9Y2M2 353 aa11.88□□□□□ -0.51
SKP1-205ENST00000519054 AKT1S1Q96B36 256 aa11.87□□□□□ -0.51
SKP1-205ENST00000519054 PABPN1Q86U42 306 aaKnown RBP eCLIP11.8□□□□□ -0.52
SKP1-205ENST00000519054 REM2Q8IYK8 340 aaPredicted RBP11.77□□□□□ -0.53
SKP1-205ENST00000519054 PROM2Q8N271 834 aa11.7□□□□□ -0.54
SKP1-205ENST00000519054 PITPNM1O00562 1244 aa11.65□□□□□ -0.54
SKP1-205ENST00000519054 SPDYE1Q8NFV5 336 aaPredicted RBP11.65□□□□□ -0.54
SKP1-205ENST00000519054 CLEC11AQ9Y240 323 aa11.64□□□□□ -0.55
SKP1-205ENST00000519054 CHRDL2Q6WN34 429 aa11.57□□□□□ -0.56
SKP1-205ENST00000519054 STAG3Q9UJ98 1225 aa11.55□□□□□ -0.56
SKP1-205ENST00000519054 PRR29P0C7W0 189 aa11.5□□□□□ -0.57
SKP1-205ENST00000519054 FBXO3Q9UK99 471 aa11.48□□□□□ -0.57
SKP1-205ENST00000519054 FXR2P51116 673 aaKnown RBP eCLIP11.42□□□□□ -0.58
SKP1-205ENST00000519054 PIP4P2Q8N4L2 257 aa11.41□□□□□ -0.58
SKP1-205ENST00000519054 CHADLQ6NUI6 762 aa11.37□□□□□ -0.59
SKP1-205ENST00000519054 PRKAR2AP13861 404 aaKnown RBP11.36□□□□□ -0.59
SKP1-205ENST00000519054 MIER1Q8N108 512 aa11.35□□□□□ -0.59
SKP1-205ENST00000519054 VASPP50552 380 aaPredicted RBP11.34□□□□□ -0.59
SKP1-205ENST00000519054 CREBZFQ9NS37 354 aa11.34□□□□□ -0.59
SKP1-205ENST00000519054 PLCD3Q8N3E9 789 aa11.32□□□□□ -0.6
SKP1-205ENST00000519054 PLEKHG5O94827 1062 aa11.28□□□□□ -0.6
SKP1-205ENST00000519054 POTEHQ6S545 545 aa11.27□□□□□ -0.61
SKP1-205ENST00000519054 FARP1Q9Y4F1 1045 aaPredicted RBP11.23□□□□□ -0.61
SKP1-205ENST00000519054 MNX1P50219 401 aaPredicted RBP11.2□□□□□ -0.62
SKP1-205ENST00000519054 IFNLR1Q8IU57 520 aaPredicted RBP11.19□□□□□ -0.62
SKP1-205ENST00000519054 KLHL34Q8N239 644 aa11.18□□□□□ -0.62
SKP1-205ENST00000519054 ZBTB47Q9UFB7 747 aaPredicted RBP11.17□□□□□ -0.62
SKP1-205ENST00000519054 NPM1P06748 294 aaKnown RBP eCLIP11.14□□□□□ -0.63
SKP1-205ENST00000519054 HAX1O00165 279 aa11.08□□□□□ -0.64
SKP1-205ENST00000519054 SPOCK2Q92563 424 aa11.05□□□□□ -0.64
SKP1-205ENST00000519054 NUBP1P53384 320 aa11.04□□□□□ -0.64
SKP1-205ENST00000519054 C19orf67A6NJJ6 358 aa11.03□□□□□ -0.64
SKP1-205ENST00000519054 CD44P16070 742 aaKnown RBP11.03□□□□□ -0.64
SKP1-205ENST00000519054 RASEFQ8IZ41 740 aa11.03□□□□□ -0.64
SKP1-205ENST00000519054 TSPYL2Q9H2G4 693 aaPredicted RBP11□□□□□ -0.65
SKP1-205ENST00000519054 PAK3O75914 559 aaPredicted RBP10.98□□□□□ -0.65
SKP1-205ENST00000519054 EVX2Q03828 476 aa10.98□□□□□ -0.65
SKP1-205ENST00000519054 ZRANB1Q9UGI0 708 aa10.97□□□□□ -0.65
SKP1-205ENST00000519054 FAM212AQ96EL1 285 aa10.96□□□□□ -0.65
SKP1-205ENST00000519054 DCAF8Q5TAQ9 597 aa10.95□□□□□ -0.66
SKP1-205ENST00000519054 CIZ1Q9ULV3 898 aaPredicted RBP10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms