RNA–Protein interactions for RNA: ENST00000605895.5

RER1-209, Transcript of retention in endoplasmic reticulum sorting receptor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RER1, Length 3,044 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RER1-209ENST00000605895 NISCHQ9Y2I1 1504 aa28.56■■■□□ 2.16
RER1-209ENST00000605895 SHROOM4Q9ULL8 1493 aa26.31■■□□□ 1.8
RER1-209ENST00000605895 SUPT5HO00267 1087 aaKnown RBP26.23■■□□□ 1.79
RER1-209ENST00000605895 HRCP23327 699 aa26.12■■□□□ 1.77
RER1-209ENST00000605895 PPARGC1BQ86YN6 1023 aaKnown RBP26.1■■□□□ 1.77
RER1-209ENST00000605895 PCGF6Q9BYE7 350 aa25.99■■□□□ 1.75
RER1-209ENST00000605895 MYO15BQ96JP2 1530 aa25.52■■□□□ 1.68
RER1-209ENST00000605895 CHIC1Q5VXU3 224 aa25.38■■□□□ 1.65
RER1-209ENST00000605895 LOC105371045A0A1W2PR82 267 aa25.19■■□□□ 1.62
RER1-209ENST00000605895 DCAF8L2P0C7V8 631 aa24.98■■□□□ 1.59
RER1-209ENST00000605895 SCAF1Q9H7N4 1312 aaKnown RBP24.91■■□□□ 1.58
RER1-209ENST00000605895 PELP1Q8IZL8 1130 aaKnown RBP24.86■■□□□ 1.57
RER1-209ENST00000605895 TRIM26Q12899 539 aaPredicted RBP24.73■■□□□ 1.55
RER1-209ENST00000605895 EHMT2Q96KQ7 1210 aa24.68■■□□□ 1.54
RER1-209ENST00000605895 DCAF1Q9Y4B6 1507 aa24.52■■□□□ 1.52
RER1-209ENST00000605895 FAM9AQ8IZU1 332 aaPredicted RBP24.42■■□□□ 1.5
RER1-209ENST00000605895 ZEB1P37275 1124 aaPredicted RBP24.32■■□□□ 1.48
RER1-209ENST00000605895 NEUROD1Q13562 356 aa24.28■■□□□ 1.48
RER1-209ENST00000605895 ZCCHC6Q5VYS8 1495 aaKnown RBP24.21■■□□□ 1.47
RER1-209ENST00000605895 GTF3C3Q9Y5Q9 886 aa24.19■■□□□ 1.46
RER1-209ENST00000605895 CCDC180Q9P1Z9 1646 aa24.16■■□□□ 1.46
RER1-209ENST00000605895 ACIN1Q9UKV3 1341 aaKnown RBP24.16■■□□□ 1.46
RER1-209ENST00000605895 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.11■■□□□ 1.45
RER1-209ENST00000605895 TTBK1Q5TCY1 1321 aaPredicted RBP24■■□□□ 1.43
RER1-209ENST00000605895 TRIM41Q8WV44 630 aa23.97■■□□□ 1.43
RER1-209ENST00000605895 CCER1Q8TC90 406 aaPredicted RBP23.95■■□□□ 1.42
RER1-209ENST00000605895 YTHDC1Q96MU7 727 aaKnown RBP23.91■■□□□ 1.42
RER1-209ENST00000605895 DIEXFQ68CQ4 756 aaKnown RBP23.86■■□□□ 1.41
RER1-209ENST00000605895 CENPBP07199 599 aaPredicted RBP23.81■■□□□ 1.4
RER1-209ENST00000605895 MYT1Q01538 1121 aa23.72■■□□□ 1.39
RER1-209ENST00000605895 MIER1Q8N108 512 aa23.33■■□□□ 1.33
RER1-209ENST00000605895 ZNF316A6NFI3 1004 aaPredicted RBP23.26■■□□□ 1.31
RER1-209ENST00000605895 RSF1Q96T23 1441 aaPredicted RBP23.21■■□□□ 1.31
RER1-209ENST00000605895 RB1CC1Q8TDY2 1594 aa23.15■■□□□ 1.3
RER1-209ENST00000605895 HNRNPUL2Q1KMD3 747 aaKnown RBP23.09■■□□□ 1.29
RER1-209ENST00000605895 ABCC9O60706 1549 aa22.98■■□□□ 1.27
RER1-209ENST00000605895 SCRIBQ14160 1630 aa22.91■■□□□ 1.26
RER1-209ENST00000605895 UBTFP17480 764 aaKnown RBP22.88■■□□□ 1.25
RER1-209ENST00000605895 SUPT16HQ9Y5B9 1047 aaKnown RBP22.86■■□□□ 1.25
RER1-209ENST00000605895 RANGAP1P46060 587 aaPredicted RBP22.84■■□□□ 1.25
RER1-209ENST00000605895 BCANQ96GW7 911 aa22.84■■□□□ 1.25
RER1-209ENST00000605895 BCL11AQ9H165 835 aa22.82■■□□□ 1.24
RER1-209ENST00000605895 TSHZ2Q9NRE2 1034 aa22.76■■□□□ 1.23
RER1-209ENST00000605895 ANP32EQ9BTT0 268 aa22.73■■□□□ 1.23
RER1-209ENST00000605895 CECR2Q9BXF3 1484 aa22.71■■□□□ 1.23
RER1-209ENST00000605895 CEP162Q5TB80 1403 aa22.71■■□□□ 1.23
RER1-209ENST00000605895 CSRNP3Q8WYN3 585 aa22.71■■□□□ 1.23
RER1-209ENST00000605895 KCNH8Q96L42 1107 aa22.59■■□□□ 1.21
RER1-209ENST00000605895 SOGA1O94964 1423 aa22.56■■□□□ 1.2
RER1-209ENST00000605895 CCDC88BA6NC98 1476 aa22.55■■□□□ 1.2
RER1-209ENST00000605895 MROH2BQ7Z745 1585 aa22.54■■□□□ 1.2
RER1-209ENST00000605895 ABCC8Q09428 1581 aa22.53■■□□□ 1.2
RER1-209ENST00000605895 WRNQ14191 1432 aaPredicted RBP eCLIP22.48■■□□□ 1.194e-8■■■■■ 27.9
RER1-209ENST00000605895 WIZO95785 1651 aa22.46■■□□□ 1.19
RER1-209ENST00000605895 RUSC2Q8N2Y8 1516 aa22.46■■□□□ 1.19
RER1-209ENST00000605895 ITGAEP38570 1179 aa22.43■■□□□ 1.18
RER1-209ENST00000605895 FKBP8Q14318 412 aa22.43■■□□□ 1.18
RER1-209ENST00000605895 APLP2Q06481 763 aa22.41■■□□□ 1.18
RER1-209ENST00000605895 TNIKQ9UKE5 1360 aa22.38■■□□□ 1.17
RER1-209ENST00000605895 RBM19Q9Y4C8 960 aaKnown RBP22.26■■□□□ 1.15
RER1-209ENST00000605895 TRIM52Q96A61 297 aa22.21■■□□□ 1.15
RER1-209ENST00000605895 CLSPNQ9HAW4 1339 aa22.2■■□□□ 1.14
RER1-209ENST00000605895 HIRIP3Q9BW71 556 aaPredicted RBP22.2■■□□□ 1.14
RER1-209ENST00000605895 DDX10Q13206 875 aaKnown RBP22.17■■□□□ 1.14
RER1-209ENST00000605895 DHX57Q6P158 1386 aaKnown RBP22.11■■□□□ 1.13
RER1-209ENST00000605895 CLIP1P30622 1438 aa22.11■■□□□ 1.13
RER1-209ENST00000605895 NEFLP07196 543 aa22.1■■□□□ 1.13
RER1-209ENST00000605895 MSH5O43196 834 aa22.09■■□□□ 1.13
RER1-209ENST00000605895 IRX6P78412 446 aaPredicted RBP22.09■■□□□ 1.13
RER1-209ENST00000605895 GOLGA3Q08378 1498 aa22.08■■□□□ 1.13
RER1-209ENST00000605895 KANK4Q5T7N3 995 aaPredicted RBP22.03■■□□□ 1.12
RER1-209ENST00000605895 EIF4G1Q04637 1599 aaKnown RBP22.01■■□□□ 1.11
RER1-209ENST00000605895 ERICH6Q7L0X2 663 aa21.99■■□□□ 1.11
RER1-209ENST00000605895 BAZ1AQ9NRL2 1556 aaPredicted RBP21.96■■□□□ 1.11
RER1-209ENST00000605895 VPS8Q8N3P4 1428 aa21.93■■□□□ 1.1
RER1-209ENST00000605895 SIN3AQ96ST3 1273 aa21.91■■□□□ 1.1
RER1-209ENST00000605895 NACADO15069 1562 aa21.91■■□□□ 1.1
RER1-209ENST00000605895 EEA1Q15075 1411 aa21.86■■□□□ 1.09
RER1-209ENST00000605895 RAPGEF2Q9Y4G8 1499 aa21.83■■□□□ 1.09
RER1-209ENST00000605895 CEP164Q9UPV0 1460 aa21.81■■□□□ 1.08
RER1-209ENST00000605895 SMARCA2P51531 1590 aa21.78■■□□□ 1.08
RER1-209ENST00000605895 PRKCSHP14314 528 aaPredicted RBP21.77■■□□□ 1.08
RER1-209ENST00000605895 NBR1Q14596 966 aa21.75■■□□□ 1.07
RER1-209ENST00000605895 ANP32CO43423 234 aa21.74■■□□□ 1.07
RER1-209ENST00000605895 TOP2AP11388 1531 aaKnown RBP21.74■■□□□ 1.07
RER1-209ENST00000605895 CDK11AQ9UQ88 783 aaPredicted RBP21.74■■□□□ 1.07
RER1-209ENST00000605895 KIF21BO75037 1637 aa21.7■■□□□ 1.07
RER1-209ENST00000605895 DEKP35659 375 aaKnown RBP21.7■■□□□ 1.06
RER1-209ENST00000605895 HNRNPUQ00839 825 aaKnown RBP eCLIP21.7■■□□□ 1.06
RER1-209ENST00000605895 PABPN1Q86U42 306 aaKnown RBP eCLIP21.7■■□□□ 1.06
RER1-209ENST00000605895 FAM50AQ14320 339 aaKnown RBP21.66■■□□□ 1.06
RER1-209ENST00000605895 PPP1R15AO75807 674 aaPredicted RBP21.65■■□□□ 1.06
RER1-209ENST00000605895 RAB3GAP2Q9H2M9 1393 aa21.64■■□□□ 1.06
RER1-209ENST00000605895 ATP1B4Q9UN42 357 aaPredicted RBP21.64■■□□□ 1.05
RER1-209ENST00000605895 ANO8Q9HCE9 1232 aaPredicted RBP21.6■■□□□ 1.05
RER1-209ENST00000605895 SYNJ1O43426 1573 aa21.59■■□□□ 1.05
RER1-209ENST00000605895 CCNB3Q8WWL7 1395 aa21.59■■□□□ 1.05
RER1-209ENST00000605895 B4GALNT3Q6L9W6 998 aa21.58■■□□□ 1.05
RER1-209ENST00000605895 WDR97A6NE52 1622 aa21.58■■□□□ 1.05
RER1-209ENST00000605895 CNGB1Q14028 1251 aaPredicted RBP21.58■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms