RNA–Protein interactions for RNA: ENST00000523966.5

SKP1-212, Transcript of S-phase kinase associated protein 1, humanhuman

TSL 3

Gene SKP1, Length 899 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-212ENST00000523966 AEBP2Q6ZN18 517 aaPredicted RBP17.51■□□□□ 0.39
SKP1-212ENST00000523966 CHIC1Q5VXU3 224 aa17.46■□□□□ 0.39
SKP1-212ENST00000523966 PHF23Q9BUL5 403 aaPredicted RBP15.32■□□□□ 0.04
SKP1-212ENST00000523966 SENP3Q9H4L4 574 aaPredicted RBP14.94□□□□□ -0.02
SKP1-212ENST00000523966 PLPPR3Q6T4P5 718 aa14.37□□□□□ -0.11
SKP1-212ENST00000523966 FOXD1Q16676 465 aa13.76□□□□□ -0.21
SKP1-212ENST00000523966 ADRA2BP18089 450 aa13.49□□□□□ -0.25
SKP1-212ENST00000523966 PPP6R1Q9UPN7 881 aa13.43□□□□□ -0.26
SKP1-212ENST00000523966 PIAS4Q8N2W9 510 aaPredicted RBP13.12□□□□□ -0.31
SKP1-212ENST00000523966 MSH5O43196 834 aa12.67□□□□□ -0.38
SKP1-212ENST00000523966 PPP4R3CPQ6ZMV5 832 aa12.67□□□□□ -0.38
SKP1-212ENST00000523966 KCNA4P22459 653 aa12.66□□□□□ -0.38
SKP1-212ENST00000523966 NCBP3Q53F19 620 aaKnown RBP12.53□□□□□ -0.4
SKP1-212ENST00000523966 SCAF1Q9H7N4 1312 aaKnown RBP12.48□□□□□ -0.41
SKP1-212ENST00000523966 POTEDQ86YR6 584 aa12.38□□□□□ -0.43
SKP1-212ENST00000523966 CNKSR2Q8WXI2 1034 aa12.28□□□□□ -0.44
SKP1-212ENST00000523966 NPM3O75607 178 aaKnown RBP12.21□□□□□ -0.45
SKP1-212ENST00000523966 SLC4A1APQ9BWU0 796 aaKnown RBP12.19□□□□□ -0.46
SKP1-212ENST00000523966 EHMT2Q96KQ7 1210 aa12.17□□□□□ -0.46
SKP1-212ENST00000523966 MAPK8IP2Q13387 824 aaPredicted RBP12.13□□□□□ -0.47
SKP1-212ENST00000523966 RNF216Q9NWF9 866 aaPredicted RBP11.95□□□□□ -0.5
SKP1-212ENST00000523966 DMRT2Q9Y5R5 561 aa11.93□□□□□ -0.5
SKP1-212ENST00000523966 CSRNP3Q8WYN3 585 aa11.82□□□□□ -0.52
SKP1-212ENST00000523966 HOXD11P31277 338 aaPredicted RBP11.78□□□□□ -0.52
SKP1-212ENST00000523966 DNAJC5BQ9UF47 199 aa11.77□□□□□ -0.53
SKP1-212ENST00000523966 FOXD4L1Q9NU39 408 aa11.63□□□□□ -0.55
SKP1-212ENST00000523966 ZBTB22O15209 634 aa11.59□□□□□ -0.55
SKP1-212ENST00000523966 DCAF8L1A6NGE4 600 aa11.53□□□□□ -0.56
SKP1-212ENST00000523966 SLC4A2P04920 1241 aa11.41□□□□□ -0.58
SKP1-212ENST00000523966 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.35□□□□□ -0.599e-8■■■□□ 17.3
SKP1-212ENST00000523966 MYCNP04198 464 aaPredicted RBP11.34□□□□□ -0.59
SKP1-212ENST00000523966 ATXN8OSP0DMR3 200 aa11.21□□□□□ -0.61
SKP1-212ENST00000523966 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.18□□□□□ -0.62
SKP1-212ENST00000523966 HNRNPUL2Q1KMD3 747 aaKnown RBP11.18□□□□□ -0.62
SKP1-212ENST00000523966 SAMD1Q6SPF0 538 aaPredicted RBP11.12□□□□□ -0.63
SKP1-212ENST00000523966 U3KPZ7 1027 aaPredicted RBP11.07□□□□□ -0.64
SKP1-212ENST00000523966 APLP2Q06481 763 aa11.03□□□□□ -0.64
SKP1-212ENST00000523966 ATF5Q9Y2D1 282 aaPredicted RBP10.91□□□□□ -0.66
SKP1-212ENST00000523966 RNF39Q9H2S5 420 aa10.81□□□□□ -0.68
SKP1-212ENST00000523966 ZNF219Q9P2Y4 722 aaPredicted RBP10.8□□□□□ -0.68
SKP1-212ENST00000523966 C1QBPQ07021 282 aaKnown RBP10.76□□□□□ -0.69
SKP1-212ENST00000523966 TRHP20396 242 aaPredicted RBP10.75□□□□□ -0.69
SKP1-212ENST00000523966 FKBP8Q14318 412 aa10.74□□□□□ -0.69
SKP1-212ENST00000523966 CAPN15O75808 1086 aa10.73□□□□□ -0.69
SKP1-212ENST00000523966 SPINK5Q9NQ38 1064 aaPredicted RBP10.68□□□□□ -0.7
SKP1-212ENST00000523966 FBLN2P98095 1184 aa10.61□□□□□ -0.71
SKP1-212ENST00000523966 POLA2Q14181 598 aa10.6□□□□□ -0.71
SKP1-212ENST00000523966 ABCB7O75027 752 aa10.51□□□□□ -0.73
SKP1-212ENST00000523966 ZBTB12Q9Y330 459 aaPredicted RBP10.51□□□□□ -0.73
SKP1-212ENST00000523966 SPDYE4A6NLX3 237 aa10.46□□□□□ -0.73
SKP1-212ENST00000523966 MKRN4PQ13434 485 aaPredicted RBP10.45□□□□□ -0.74
SKP1-212ENST00000523966 CACNB1Q02641 598 aaPredicted RBP10.42□□□□□ -0.74
SKP1-212ENST00000523966 DSG3P32926 999 aa10.39□□□□□ -0.75
SKP1-212ENST00000523966 FBXO3Q9UK99 471 aa10.36□□□□□ -0.75
SKP1-212ENST00000523966 AMER1Q5JTC6 1135 aaPredicted RBP10.33□□□□□ -0.76
SKP1-212ENST00000523966 ZNF692Q9BU19 519 aaPredicted RBP10.23□□□□□ -0.77
SKP1-212ENST00000523966 RTN4Q9NQC3 1192 aaKnown RBP10.22□□□□□ -0.77
SKP1-212ENST00000523966 PROM2Q8N271 834 aa10.21□□□□□ -0.77
SKP1-212ENST00000523966 SPDYE2BA6NHP3 402 aa10.2□□□□□ -0.78
SKP1-212ENST00000523966 SPDYE6P0CI01 402 aa10.2□□□□□ -0.78
SKP1-212ENST00000523966 SPDYE2Q495Y8 402 aa10.2□□□□□ -0.78
SKP1-212ENST00000523966 OSCARQ8IYS5 282 aa10.2□□□□□ -0.78
SKP1-212ENST00000523966 VASPP50552 380 aaPredicted RBP10.12□□□□□ -0.79
SKP1-212ENST00000523966 SSUH2Q9Y2M2 353 aa10.09□□□□□ -0.79
SKP1-212ENST00000523966 PABPN1Q86U42 306 aaKnown RBP eCLIP10.08□□□□□ -0.8
SKP1-212ENST00000523966 STAG3Q9UJ98 1225 aa10.06□□□□□ -0.8
SKP1-212ENST00000523966 RBM42Q9BTD8 480 aaKnown RBP10□□□□□ -0.81
SKP1-212ENST00000523966 KLHL34Q8N239 644 aa9.99□□□□□ -0.81
SKP1-212ENST00000523966 PLCD3Q8N3E9 789 aa9.98□□□□□ -0.81
SKP1-212ENST00000523966 PLEKHG5O94827 1062 aa9.96□□□□□ -0.82
SKP1-212ENST00000523966 IFNLR1Q8IU57 520 aaPredicted RBP9.96□□□□□ -0.82
SKP1-212ENST00000523966 MIER1Q8N108 512 aa9.95□□□□□ -0.82
SKP1-212ENST00000523966 SPOCK2Q92563 424 aa9.89□□□□□ -0.83
SKP1-212ENST00000523966 AKT1S1Q96B36 256 aa9.89□□□□□ -0.83
SKP1-212ENST00000523966 SPDYE1Q8NFV5 336 aaPredicted RBP9.87□□□□□ -0.83
SKP1-212ENST00000523966 ZBTB47Q9UFB7 747 aaPredicted RBP9.87□□□□□ -0.83
SKP1-212ENST00000523966 CLEC11AQ9Y240 323 aa9.82□□□□□ -0.84
SKP1-212ENST00000523966 DCAF8L2P0C7V8 631 aa9.8□□□□□ -0.84
SKP1-212ENST00000523966 REM2Q8IYK8 340 aaPredicted RBP9.78□□□□□ -0.84
SKP1-212ENST00000523966 SLC24A1O60721 1099 aa9.77□□□□□ -0.85
SKP1-212ENST00000523966 PRR29P0C7W0 189 aa9.77□□□□□ -0.85
SKP1-212ENST00000523966 PKD2Q13563 968 aa9.73□□□□□ -0.85
SKP1-212ENST00000523966 ECM2O94769 699 aaPredicted RBP9.72□□□□□ -0.85
SKP1-212ENST00000523966 CIZ1Q9ULV3 898 aaPredicted RBP9.72□□□□□ -0.85
SKP1-212ENST00000523966 PITPNM1O00562 1244 aa9.63□□□□□ -0.87
SKP1-212ENST00000523966 GSE1Q14687 1217 aa9.63□□□□□ -0.87
SKP1-212ENST00000523966 TRIM41Q8WV44 630 aa9.62□□□□□ -0.87
SKP1-212ENST00000523966 CREBZFQ9NS37 354 aa9.62□□□□□ -0.87
SKP1-212ENST00000523966 DCAF8Q5TAQ9 597 aa9.61□□□□□ -0.87
SKP1-212ENST00000523966 NPM1P06748 294 aaKnown RBP eCLIP9.6□□□□□ -0.87
SKP1-212ENST00000523966 FAM212AQ96EL1 285 aa9.57□□□□□ -0.88
SKP1-212ENST00000523966 NUBP1P53384 320 aa9.55□□□□□ -0.88
SKP1-212ENST00000523966 POTEHQ6S545 545 aa9.55□□□□□ -0.88
SKP1-212ENST00000523966 RGL2O15211 777 aa9.54□□□□□ -0.88
SKP1-212ENST00000523966 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.54□□□□□ -0.88
SKP1-212ENST00000523966 PLCB2Q00722 1185 aa9.52□□□□□ -0.89
SKP1-212ENST00000523966 TAOK2Q9UL54 1235 aa9.51□□□□□ -0.89
SKP1-212ENST00000523966 MNX1P50219 401 aaPredicted RBP9.5□□□□□ -0.89
SKP1-212ENST00000523966 BBXQ8WY36 941 aaPredicted RBP9.49□□□□□ -0.89
SKP1-212ENST00000523966 CHADLQ6NUI6 762 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms