RNA–Protein interactions for RNA: ENST00000521216.5

SKP1-208, Transcript of S-phase kinase associated protein 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SKP1, Length 899 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-208ENST00000521216 AEBP2Q6ZN18 517 aaPredicted RBP25.49■■□□□ 1.67
SKP1-208ENST00000521216 CHIC1Q5VXU3 224 aa25.1■■□□□ 1.61
SKP1-208ENST00000521216 PHF23Q9BUL5 403 aaPredicted RBP22.12■■□□□ 1.13
SKP1-208ENST00000521216 SENP3Q9H4L4 574 aaPredicted RBP21.6■■□□□ 1.05
SKP1-208ENST00000521216 PLPPR3Q6T4P5 718 aa20.51■□□□□ 0.87
SKP1-208ENST00000521216 FOXD1Q16676 465 aa20.02■□□□□ 0.8
SKP1-208ENST00000521216 ADRA2BP18089 450 aa19.5■□□□□ 0.71
SKP1-208ENST00000521216 PPP6R1Q9UPN7 881 aa19.47■□□□□ 0.71
SKP1-208ENST00000521216 PIAS4Q8N2W9 510 aaPredicted RBP18.99■□□□□ 0.63
SKP1-208ENST00000521216 MSH5O43196 834 aa18.37■□□□□ 0.53
SKP1-208ENST00000521216 PPP4R3CPQ6ZMV5 832 aa18.12■□□□□ 0.49
SKP1-208ENST00000521216 KCNA4P22459 653 aa17.97■□□□□ 0.47
SKP1-208ENST00000521216 SCAF1Q9H7N4 1312 aaKnown RBP17.81■□□□□ 0.44
SKP1-208ENST00000521216 NCBP3Q53F19 620 aaKnown RBP17.72■□□□□ 0.43
SKP1-208ENST00000521216 MAPK8IP2Q13387 824 aaPredicted RBP17.63■□□□□ 0.41
SKP1-208ENST00000521216 CNKSR2Q8WXI2 1034 aa17.54■□□□□ 0.4
SKP1-208ENST00000521216 NPM3O75607 178 aaKnown RBP17.44■□□□□ 0.38
SKP1-208ENST00000521216 DMRT2Q9Y5R5 561 aa17.26■□□□□ 0.35
SKP1-208ENST00000521216 SLC4A1APQ9BWU0 796 aaKnown RBP17.17■□□□□ 0.34
SKP1-208ENST00000521216 RNF216Q9NWF9 866 aaPredicted RBP17.12■□□□□ 0.33
SKP1-208ENST00000521216 EHMT2Q96KQ7 1210 aa17.01■□□□□ 0.31
SKP1-208ENST00000521216 HOXD11P31277 338 aaPredicted RBP16.97■□□□□ 0.31
SKP1-208ENST00000521216 DNAJC5BQ9UF47 199 aa16.74■□□□□ 0.27
SKP1-208ENST00000521216 DCAF8L1A6NGE4 600 aa16.67■□□□□ 0.26
SKP1-208ENST00000521216 CSRNP3Q8WYN3 585 aa16.61■□□□□ 0.25
SKP1-208ENST00000521216 ZBTB22O15209 634 aa16.51■□□□□ 0.23
SKP1-208ENST00000521216 FOXD4L1Q9NU39 408 aa16.45■□□□□ 0.22
SKP1-208ENST00000521216 SLC4A2P04920 1241 aa16.39■□□□□ 0.21
SKP1-208ENST00000521216 POTEDQ86YR6 584 aa16.35■□□□□ 0.21
SKP1-208ENST00000521216 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.3■□□□□ 0.29e-8■■■□□ 17.3
SKP1-208ENST00000521216 MYCNP04198 464 aaPredicted RBP16.1■□□□□ 0.17
SKP1-208ENST00000521216 U3KPZ7 1027 aaPredicted RBP15.98■□□□□ 0.15
SKP1-208ENST00000521216 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.87■□□□□ 0.13
SKP1-208ENST00000521216 HNRNPUL2Q1KMD3 747 aaKnown RBP15.87■□□□□ 0.13
SKP1-208ENST00000521216 SAMD1Q6SPF0 538 aaPredicted RBP15.82■□□□□ 0.12
SKP1-208ENST00000521216 ATXN8OSP0DMR3 200 aa15.81■□□□□ 0.12
SKP1-208ENST00000521216 RNF39Q9H2S5 420 aa15.75■□□□□ 0.11
SKP1-208ENST00000521216 ATF5Q9Y2D1 282 aaPredicted RBP15.68■□□□□ 0.1
SKP1-208ENST00000521216 APLP2Q06481 763 aa15.65■□□□□ 0.1
SKP1-208ENST00000521216 C1QBPQ07021 282 aaKnown RBP15.58■□□□□ 0.08
SKP1-208ENST00000521216 SPINK5Q9NQ38 1064 aaPredicted RBP15.51■□□□□ 0.07
SKP1-208ENST00000521216 CAPN15O75808 1086 aa15.49■□□□□ 0.07
SKP1-208ENST00000521216 TRHP20396 242 aaPredicted RBP15.47■□□□□ 0.07
SKP1-208ENST00000521216 ZNF219Q9P2Y4 722 aaPredicted RBP15.42■□□□□ 0.06
SKP1-208ENST00000521216 CACNB1Q02641 598 aaPredicted RBP15.27■□□□□ 0.04
SKP1-208ENST00000521216 POLA2Q14181 598 aa15.24■□□□□ 0.03
SKP1-208ENST00000521216 ABCB7O75027 752 aa15.21■□□□□ 0.03
SKP1-208ENST00000521216 DSG3P32926 999 aa15.09■□□□□ 0.01
SKP1-208ENST00000521216 FKBP8Q14318 412 aa15.06■□□□□ 0
SKP1-208ENST00000521216 FBLN2P98095 1184 aa15.03■□□□□ -0
SKP1-208ENST00000521216 MKRN4PQ13434 485 aaPredicted RBP14.98□□□□□ -0.01
SKP1-208ENST00000521216 ZBTB12Q9Y330 459 aaPredicted RBP14.95□□□□□ -0.02
SKP1-208ENST00000521216 SPDYE4A6NLX3 237 aa14.81□□□□□ -0.04
SKP1-208ENST00000521216 OSCARQ8IYS5 282 aa14.7□□□□□ -0.06
SKP1-208ENST00000521216 ZNF692Q9BU19 519 aaPredicted RBP14.61□□□□□ -0.07
SKP1-208ENST00000521216 SPDYE2BA6NHP3 402 aa14.56□□□□□ -0.08
SKP1-208ENST00000521216 SPDYE6P0CI01 402 aa14.56□□□□□ -0.08
SKP1-208ENST00000521216 SPDYE2Q495Y8 402 aa14.56□□□□□ -0.08
SKP1-208ENST00000521216 PROM2Q8N271 834 aa14.47□□□□□ -0.09
SKP1-208ENST00000521216 SSUH2Q9Y2M2 353 aa14.44□□□□□ -0.1
SKP1-208ENST00000521216 FBXO3Q9UK99 471 aa14.43□□□□□ -0.1
SKP1-208ENST00000521216 PABPN1Q86U42 306 aaKnown RBP eCLIP14.41□□□□□ -0.1
SKP1-208ENST00000521216 RBM42Q9BTD8 480 aaKnown RBP14.37□□□□□ -0.11
SKP1-208ENST00000521216 AKT1S1Q96B36 256 aa14.24□□□□□ -0.13
SKP1-208ENST00000521216 VASPP50552 380 aaPredicted RBP14.22□□□□□ -0.13
SKP1-208ENST00000521216 STAG3Q9UJ98 1225 aa14.18□□□□□ -0.14
SKP1-208ENST00000521216 REM2Q8IYK8 340 aaPredicted RBP14.13□□□□□ -0.15
SKP1-208ENST00000521216 SPDYE1Q8NFV5 336 aaPredicted RBP14.11□□□□□ -0.15
SKP1-208ENST00000521216 CLEC11AQ9Y240 323 aa14.11□□□□□ -0.15
SKP1-208ENST00000521216 AMER1Q5JTC6 1135 aaPredicted RBP14.08□□□□□ -0.16
SKP1-208ENST00000521216 MIER1Q8N108 512 aa14.07□□□□□ -0.16
SKP1-208ENST00000521216 PLCD3Q8N3E9 789 aa14.07□□□□□ -0.16
SKP1-208ENST00000521216 RTN4Q9NQC3 1192 aaKnown RBP14.07□□□□□ -0.16
SKP1-208ENST00000521216 IFNLR1Q8IU57 520 aaPredicted RBP14.04□□□□□ -0.16
SKP1-208ENST00000521216 KLHL34Q8N239 644 aa14.02□□□□□ -0.17
SKP1-208ENST00000521216 PRR29P0C7W0 189 aa13.98□□□□□ -0.17
SKP1-208ENST00000521216 PLEKHG5O94827 1062 aa13.97□□□□□ -0.17
SKP1-208ENST00000521216 PITPNM1O00562 1244 aa13.96□□□□□ -0.17
SKP1-208ENST00000521216 SPOCK2Q92563 424 aa13.85□□□□□ -0.19
SKP1-208ENST00000521216 ZBTB47Q9UFB7 747 aaPredicted RBP13.84□□□□□ -0.19
SKP1-208ENST00000521216 CREBZFQ9NS37 354 aa13.8□□□□□ -0.2
SKP1-208ENST00000521216 CHADLQ6NUI6 762 aa13.71□□□□□ -0.21
SKP1-208ENST00000521216 CHRDL2Q6WN34 429 aa13.71□□□□□ -0.21
SKP1-208ENST00000521216 CIZ1Q9ULV3 898 aaPredicted RBP13.68□□□□□ -0.22
SKP1-208ENST00000521216 PRKAR2AP13861 404 aaKnown RBP13.64□□□□□ -0.23
SKP1-208ENST00000521216 MNX1P50219 401 aaPredicted RBP13.64□□□□□ -0.23
SKP1-208ENST00000521216 PKD2Q13563 968 aa13.64□□□□□ -0.23
SKP1-208ENST00000521216 NPM1P06748 294 aaKnown RBP eCLIP13.61□□□□□ -0.23
SKP1-208ENST00000521216 FXR2P51116 673 aaKnown RBP eCLIP13.61□□□□□ -0.23
SKP1-208ENST00000521216 NUBP1P53384 320 aa13.59□□□□□ -0.23
SKP1-208ENST00000521216 ECM2O94769 699 aaPredicted RBP13.58□□□□□ -0.24
SKP1-208ENST00000521216 DCAF8Q5TAQ9 597 aa13.58□□□□□ -0.24
SKP1-208ENST00000521216 PIP4P2Q8N4L2 257 aa13.58□□□□□ -0.24
SKP1-208ENST00000521216 DCAF8L2P0C7V8 631 aa13.57□□□□□ -0.24
SKP1-208ENST00000521216 FARP1Q9Y4F1 1045 aaPredicted RBP13.57□□□□□ -0.24
SKP1-208ENST00000521216 GSE1Q14687 1217 aa13.53□□□□□ -0.24
SKP1-208ENST00000521216 FAM212AQ96EL1 285 aa13.53□□□□□ -0.24
SKP1-208ENST00000521216 RASEFQ8IZ41 740 aa13.51□□□□□ -0.25
SKP1-208ENST00000521216 TSPYL2Q9H2G4 693 aaPredicted RBP13.45□□□□□ -0.26
SKP1-208ENST00000521216 TRIM41Q8WV44 630 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms