RNA–Protein interactions for RNA: ENST00000378513.7

RER1-203, Transcript of retention in endoplasmic reticulum sorting receptor 1, humanhuman

TSL 3 BASIC

Gene RER1, Length 3,000 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RER1-203ENST00000378513 NISCHQ9Y2I1 1504 aa31.36■■■□□ 2.61
RER1-203ENST00000378513 SHROOM4Q9ULL8 1493 aa27.56■■■□□ 2
RER1-203ENST00000378513 SUPT5HO00267 1087 aaKnown RBP27.04■■□□□ 1.92
RER1-203ENST00000378513 DCAF8L2P0C7V8 631 aa26.87■■□□□ 1.89
RER1-203ENST00000378513 ZCCHC6Q5VYS8 1495 aaKnown RBP26.47■■□□□ 1.83
RER1-203ENST00000378513 CCDC180Q9P1Z9 1646 aa26.26■■□□□ 1.8
RER1-203ENST00000378513 CHIC1Q5VXU3 224 aa26■■□□□ 1.75
RER1-203ENST00000378513 MYO15BQ96JP2 1530 aa25.95■■□□□ 1.74
RER1-203ENST00000378513 LOC105371045A0A1W2PR82 267 aa25.54■■□□□ 1.68
RER1-203ENST00000378513 PCGF6Q9BYE7 350 aa25.53■■□□□ 1.68
RER1-203ENST00000378513 DCAF1Q9Y4B6 1507 aa25.36■■□□□ 1.65
RER1-203ENST00000378513 HRCP23327 699 aa25.26■■□□□ 1.63
RER1-203ENST00000378513 SCRIBQ14160 1630 aa25.22■■□□□ 1.63
RER1-203ENST00000378513 EHMT2Q96KQ7 1210 aa25.21■■□□□ 1.63
RER1-203ENST00000378513 PPARGC1BQ86YN6 1023 aaKnown RBP25.18■■□□□ 1.62
RER1-203ENST00000378513 FAM9AQ8IZU1 332 aaPredicted RBP25.12■■□□□ 1.61
RER1-203ENST00000378513 ABCC9O60706 1549 aa25.04■■□□□ 1.6
RER1-203ENST00000378513 RSF1Q96T23 1441 aaPredicted RBP25■■□□□ 1.59
RER1-203ENST00000378513 TRIM41Q8WV44 630 aa24.94■■□□□ 1.58
RER1-203ENST00000378513 RB1CC1Q8TDY2 1594 aa24.79■■□□□ 1.56
RER1-203ENST00000378513 CECR2Q9BXF3 1484 aa24.76■■□□□ 1.55
RER1-203ENST00000378513 TRIM26Q12899 539 aaPredicted RBP24.67■■□□□ 1.54
RER1-203ENST00000378513 MROH2BQ7Z745 1585 aa24.57■■□□□ 1.52
RER1-203ENST00000378513 WIZO95785 1651 aa24.43■■□□□ 1.5
RER1-203ENST00000378513 NACADO15069 1562 aa24.42■■□□□ 1.5
RER1-203ENST00000378513 TTBK1Q5TCY1 1321 aaPredicted RBP24.33■■□□□ 1.49
RER1-203ENST00000378513 PABPN1Q86U42 306 aaKnown RBP eCLIP24.21■■□□□ 1.47
RER1-203ENST00000378513 ABCC8Q09428 1581 aa24.07■■□□□ 1.44
RER1-203ENST00000378513 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.04■■□□□ 1.44
RER1-203ENST00000378513 BAZ1AQ9NRL2 1556 aaPredicted RBP24.01■■□□□ 1.43
RER1-203ENST00000378513 CCDC88BA6NC98 1476 aa23.97■■□□□ 1.43
RER1-203ENST00000378513 ZEB1P37275 1124 aaPredicted RBP23.95■■□□□ 1.42
RER1-203ENST00000378513 SOGA1O94964 1423 aa23.88■■□□□ 1.41
RER1-203ENST00000378513 CCER1Q8TC90 406 aaPredicted RBP23.86■■□□□ 1.41
RER1-203ENST00000378513 UBTFP17480 764 aaKnown RBP23.85■■□□□ 1.41
RER1-203ENST00000378513 SMARCA4P51532 1647 aa23.84■■□□□ 1.41
RER1-203ENST00000378513 EIF4G1Q04637 1599 aaKnown RBP23.83■■□□□ 1.4
RER1-203ENST00000378513 TOP2AP11388 1531 aaKnown RBP23.81■■□□□ 1.4
RER1-203ENST00000378513 RUSC2Q8N2Y8 1516 aa23.8■■□□□ 1.4
RER1-203ENST00000378513 SMARCA2P51531 1590 aa23.78■■□□□ 1.4
RER1-203ENST00000378513 UNC13AQ9UPW8 1703 aa23.77■■□□□ 1.4
RER1-203ENST00000378513 RANGAP1P46060 587 aaPredicted RBP23.77■■□□□ 1.4
RER1-203ENST00000378513 CSRNP3Q8WYN3 585 aa23.69■■□□□ 1.38
RER1-203ENST00000378513 CEP162Q5TB80 1403 aa23.68■■□□□ 1.38
RER1-203ENST00000378513 SCAF1Q9H7N4 1312 aaKnown RBP23.67■■□□□ 1.38
RER1-203ENST00000378513 BICRAQ9NZM4 1560 aa23.54■■□□□ 1.36
RER1-203ENST00000378513 PELP1Q8IZL8 1130 aaKnown RBP23.51■■□□□ 1.35
RER1-203ENST00000378513 WRNQ14191 1432 aaPredicted RBP eCLIP23.49■■□□□ 1.354e-8■■■■■ 27.9
RER1-203ENST00000378513 TNIKQ9UKE5 1360 aa23.49■■□□□ 1.35
RER1-203ENST00000378513 HNRNPUL2Q1KMD3 747 aaKnown RBP23.48■■□□□ 1.35
RER1-203ENST00000378513 SYNJ1O43426 1573 aa23.35■■□□□ 1.33
RER1-203ENST00000378513 GOLGA3Q08378 1498 aa23.35■■□□□ 1.33
RER1-203ENST00000378513 DIEXFQ68CQ4 756 aaKnown RBP23.34■■□□□ 1.33
RER1-203ENST00000378513 ATAD2BQ9ULI0 1458 aa23.32■■□□□ 1.32
RER1-203ENST00000378513 BAZ1BQ9UIG0 1483 aaKnown RBP23.3■■□□□ 1.32
RER1-203ENST00000378513 EEA1Q15075 1411 aa23.28■■□□□ 1.32
RER1-203ENST00000378513 NEUROD1Q13562 356 aa23.24■■□□□ 1.31
RER1-203ENST00000378513 CLIP1P30622 1438 aa23.23■■□□□ 1.31
RER1-203ENST00000378513 RAPGEF2Q9Y4G8 1499 aa23.22■■□□□ 1.31
RER1-203ENST00000378513 APLP2Q06481 763 aa23.2■■□□□ 1.3
RER1-203ENST00000378513 CEP164Q9UPV0 1460 aa23.17■■□□□ 1.3
RER1-203ENST00000378513 YTHDC1Q96MU7 727 aaKnown RBP23.14■■□□□ 1.3
RER1-203ENST00000378513 PEG3Q9GZU2 1588 aa23.14■■□□□ 1.29
RER1-203ENST00000378513 ACIN1Q9UKV3 1341 aaKnown RBP23.1■■□□□ 1.29
RER1-203ENST00000378513 GTF3C3Q9Y5Q9 886 aa23.09■■□□□ 1.29
RER1-203ENST00000378513 ZNF316A6NFI3 1004 aaPredicted RBP23.04■■□□□ 1.28
RER1-203ENST00000378513 VPS8Q8N3P4 1428 aa23.02■■□□□ 1.28
RER1-203ENST00000378513 KIF21BO75037 1637 aa22.98■■□□□ 1.27
RER1-203ENST00000378513 KANK4Q5T7N3 995 aaPredicted RBP22.98■■□□□ 1.27
RER1-203ENST00000378513 ITGAEP38570 1179 aa22.96■■□□□ 1.27
RER1-203ENST00000378513 MIER1Q8N108 512 aa22.92■■□□□ 1.26
RER1-203ENST00000378513 CENPBP07199 599 aaPredicted RBP22.9■■□□□ 1.26
RER1-203ENST00000378513 TOP2BQ02880 1626 aa22.87■■□□□ 1.25
RER1-203ENST00000378513 CUX1P39880 1505 aa22.81■■□□□ 1.24
RER1-203ENST00000378513 ARAP1Q96P48 1450 aa22.77■■□□□ 1.24
RER1-203ENST00000378513 PRXQ9BXM0 1461 aa22.75■■□□□ 1.23
RER1-203ENST00000378513 P3H3Q8IVL6 736 aa22.74■■□□□ 1.23
RER1-203ENST00000378513 ATP1B4Q9UN42 357 aaPredicted RBP22.73■■□□□ 1.23
RER1-203ENST00000378513 NCAPD3P42695 1498 aa22.72■■□□□ 1.23
RER1-203ENST00000378513 KIF27Q86VH2 1401 aa22.71■■□□□ 1.23
RER1-203ENST00000378513 BIVM-ERCC5R4GMW8 1640 aa22.68■■□□□ 1.22
RER1-203ENST00000378513 DHX57Q6P158 1386 aaKnown RBP22.63■■□□□ 1.21
RER1-203ENST00000378513 CUX2O14529 1486 aa22.62■■□□□ 1.21
RER1-203ENST00000378513 CFTRP13569 1480 aa22.61■■□□□ 1.21
RER1-203ENST00000378513 HMGXB3Q12766 1538 aa22.59■■□□□ 1.21
RER1-203ENST00000378513 ERICH3Q5RHP9 1530 aa22.58■■□□□ 1.21
RER1-203ENST00000378513 ARHGAP35Q9NRY4 1499 aa22.58■■□□□ 1.2
RER1-203ENST00000378513 IGF1RP08069 1367 aa22.54■■□□□ 1.2
RER1-203ENST00000378513 FAM50AQ14320 339 aaKnown RBP22.52■■□□□ 1.19
RER1-203ENST00000378513 CCNB3Q8WWL7 1395 aa22.5■■□□□ 1.19
RER1-203ENST00000378513 CARMIL1Q5VZK9 1371 aa22.47■■□□□ 1.19
RER1-203ENST00000378513 CADPSQ9ULU8 1353 aa22.46■■□□□ 1.19
RER1-203ENST00000378513 FGD5Q6ZNL6 1462 aa22.44■■□□□ 1.18
RER1-203ENST00000378513 RRBP1Q9P2E9 1410 aaKnown RBP22.41■■□□□ 1.18
RER1-203ENST00000378513 SIN3AQ96ST3 1273 aa22.4■■□□□ 1.18
RER1-203ENST00000378513 RAB3GAP2Q9H2M9 1393 aa22.38■■□□□ 1.17
RER1-203ENST00000378513 MYT1Q01538 1121 aa22.38■■□□□ 1.17
RER1-203ENST00000378513 RAD54L2Q9Y4B4 1467 aa22.38■■□□□ 1.17
RER1-203ENST00000378513 HIRIP3Q9BW71 556 aaPredicted RBP22.38■■□□□ 1.17
RER1-203ENST00000378513 KCNH8Q96L42 1107 aa22.36■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms