RNA–Protein interactions for RNA: ENST00000522855.5

SKP1-210, Transcript of S-phase kinase associated protein 1, humanhuman

APPRIS P4 TSL 2 BASIC

Gene SKP1, Length 802 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-210ENST00000522855 AEBP2Q6ZN18 517 aaPredicted RBP23.67■■□□□ 1.38
SKP1-210ENST00000522855 CHIC1Q5VXU3 224 aa22.62■■□□□ 1.21
SKP1-210ENST00000522855 SENP3Q9H4L4 574 aaPredicted RBP20.07■□□□□ 0.8
SKP1-210ENST00000522855 PHF23Q9BUL5 403 aaPredicted RBP19.88■□□□□ 0.77
SKP1-210ENST00000522855 FOXD1Q16676 465 aa18.73■□□□□ 0.59
SKP1-210ENST00000522855 PLPPR3Q6T4P5 718 aa18.11■□□□□ 0.49
SKP1-210ENST00000522855 PPP6R1Q9UPN7 881 aa17.66■□□□□ 0.42
SKP1-210ENST00000522855 ADRA2BP18089 450 aa17.57■□□□□ 0.4
SKP1-210ENST00000522855 PIAS4Q8N2W9 510 aaPredicted RBP17.48■□□□□ 0.39
SKP1-210ENST00000522855 MSH5O43196 834 aa17.41■□□□□ 0.38
SKP1-210ENST00000522855 POTEDQ86YR6 584 aa16.7■□□□□ 0.26
SKP1-210ENST00000522855 MAPK8IP2Q13387 824 aaPredicted RBP16.08■□□□□ 0.16
SKP1-210ENST00000522855 SCAF1Q9H7N4 1312 aaKnown RBP15.99■□□□□ 0.15
SKP1-210ENST00000522855 DMRT2Q9Y5R5 561 aa15.99■□□□□ 0.15
SKP1-210ENST00000522855 PPP4R3CPQ6ZMV5 832 aa15.9■□□□□ 0.14
SKP1-210ENST00000522855 CNKSR2Q8WXI2 1034 aa15.56■□□□□ 0.08
SKP1-210ENST00000522855 HOXD11P31277 338 aaPredicted RBP15.5■□□□□ 0.07
SKP1-210ENST00000522855 RNF216Q9NWF9 866 aaPredicted RBP15.39■□□□□ 0.05
SKP1-210ENST00000522855 NCBP3Q53F19 620 aaKnown RBP15.28■□□□□ 0.04
SKP1-210ENST00000522855 NPM3O75607 178 aaKnown RBP15.16■□□□□ 0.02
SKP1-210ENST00000522855 DCAF8L1A6NGE4 600 aa15.15■□□□□ 0.02
SKP1-210ENST00000522855 KCNA4P22459 653 aa15.04■□□□□ -0
SKP1-210ENST00000522855 DNAJC5BQ9UF47 199 aa14.95□□□□□ -0.02
SKP1-210ENST00000522855 RNF39Q9H2S5 420 aa14.93□□□□□ -0.02
SKP1-210ENST00000522855 CACNB1Q02641 598 aaPredicted RBP14.75□□□□□ -0.05
SKP1-210ENST00000522855 C1QBPQ07021 282 aaKnown RBP14.67□□□□□ -0.06
SKP1-210ENST00000522855 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.63□□□□□ -0.079e-8■■■□□ 17.3
SKP1-210ENST00000522855 SLC4A2P04920 1241 aa14.47□□□□□ -0.09
SKP1-210ENST00000522855 U3KPZ7 1027 aaPredicted RBP14.47□□□□□ -0.09
SKP1-210ENST00000522855 SLC4A1APQ9BWU0 796 aaKnown RBP14.18□□□□□ -0.14
SKP1-210ENST00000522855 SPINK5Q9NQ38 1064 aaPredicted RBP14.16□□□□□ -0.14
SKP1-210ENST00000522855 CAPN15O75808 1086 aa14.05□□□□□ -0.16
SKP1-210ENST00000522855 DSG3P32926 999 aa14.02□□□□□ -0.17
SKP1-210ENST00000522855 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.01□□□□□ -0.17
SKP1-210ENST00000522855 HNRNPUL2Q1KMD3 747 aaKnown RBP14.01□□□□□ -0.17
SKP1-210ENST00000522855 MYCNP04198 464 aaPredicted RBP13.99□□□□□ -0.17
SKP1-210ENST00000522855 SAMD1Q6SPF0 538 aaPredicted RBP13.97□□□□□ -0.17
SKP1-210ENST00000522855 FOXD4L1Q9NU39 408 aa13.96□□□□□ -0.17
SKP1-210ENST00000522855 APLP2Q06481 763 aa13.95□□□□□ -0.18
SKP1-210ENST00000522855 ZNF219Q9P2Y4 722 aaPredicted RBP13.9□□□□□ -0.18
SKP1-210ENST00000522855 ZBTB22O15209 634 aa13.89□□□□□ -0.19
SKP1-210ENST00000522855 TRHP20396 242 aaPredicted RBP13.86□□□□□ -0.19
SKP1-210ENST00000522855 ABCB7O75027 752 aa13.77□□□□□ -0.21
SKP1-210ENST00000522855 ATF5Q9Y2D1 282 aaPredicted RBP13.7□□□□□ -0.22
SKP1-210ENST00000522855 POLA2Q14181 598 aa13.56□□□□□ -0.24
SKP1-210ENST00000522855 ATXN8OSP0DMR3 200 aa13.52□□□□□ -0.25
SKP1-210ENST00000522855 EHMT2Q96KQ7 1210 aa13.38□□□□□ -0.27
SKP1-210ENST00000522855 CSRNP3Q8WYN3 585 aa13.36□□□□□ -0.27
SKP1-210ENST00000522855 RBM42Q9BTD8 480 aaKnown RBP13.31□□□□□ -0.28
SKP1-210ENST00000522855 ZBTB12Q9Y330 459 aaPredicted RBP13.31□□□□□ -0.28
SKP1-210ENST00000522855 OSCARQ8IYS5 282 aa13.17□□□□□ -0.3
SKP1-210ENST00000522855 MKRN4PQ13434 485 aaPredicted RBP13.1□□□□□ -0.31
SKP1-210ENST00000522855 POTEHQ6S545 545 aa13.09□□□□□ -0.31
SKP1-210ENST00000522855 AKT1S1Q96B36 256 aa13.07□□□□□ -0.32
SKP1-210ENST00000522855 FBLN2P98095 1184 aa13.03□□□□□ -0.32
SKP1-210ENST00000522855 CHRDL2Q6WN34 429 aa12.97□□□□□ -0.33
SKP1-210ENST00000522855 SPDYE2BA6NHP3 402 aa12.95□□□□□ -0.34
SKP1-210ENST00000522855 SPDYE6P0CI01 402 aa12.95□□□□□ -0.34
SKP1-210ENST00000522855 SPDYE2Q495Y8 402 aa12.95□□□□□ -0.34
SKP1-210ENST00000522855 REM2Q8IYK8 340 aaPredicted RBP12.95□□□□□ -0.34
SKP1-210ENST00000522855 SSUH2Q9Y2M2 353 aa12.87□□□□□ -0.35
SKP1-210ENST00000522855 PITPNM1O00562 1244 aa12.84□□□□□ -0.35
SKP1-210ENST00000522855 ZNF692Q9BU19 519 aaPredicted RBP12.76□□□□□ -0.37
SKP1-210ENST00000522855 PIP4P2Q8N4L2 257 aa12.72□□□□□ -0.37
SKP1-210ENST00000522855 FXR2P51116 673 aaKnown RBP eCLIP12.7□□□□□ -0.38
SKP1-210ENST00000522855 SPDYE1Q8NFV5 336 aaPredicted RBP12.64□□□□□ -0.39
SKP1-210ENST00000522855 PABPN1Q86U42 306 aaKnown RBP eCLIP12.61□□□□□ -0.39
SKP1-210ENST00000522855 CLEC11AQ9Y240 323 aa12.54□□□□□ -0.4
SKP1-210ENST00000522855 SPDYE4A6NLX3 237 aa12.48□□□□□ -0.41
SKP1-210ENST00000522855 PRKAR2AP13861 404 aaKnown RBP12.45□□□□□ -0.42
SKP1-210ENST00000522855 PRR29P0C7W0 189 aa12.38□□□□□ -0.43
SKP1-210ENST00000522855 SP7Q8TDD2 431 aaPredicted RBP12.37□□□□□ -0.43
SKP1-210ENST00000522855 CHADLQ6NUI6 762 aa12.36□□□□□ -0.43
SKP1-210ENST00000522855 PROM2Q8N271 834 aa12.36□□□□□ -0.43
SKP1-210ENST00000522855 HAX1O00165 279 aa12.33□□□□□ -0.44
SKP1-210ENST00000522855 EVX2Q03828 476 aa12.33□□□□□ -0.44
SKP1-210ENST00000522855 C19orf67A6NJJ6 358 aa12.29□□□□□ -0.44
SKP1-210ENST00000522855 STAG3Q9UJ98 1225 aa12.28□□□□□ -0.44
SKP1-210ENST00000522855 CREBZFQ9NS37 354 aa12.23□□□□□ -0.45
SKP1-210ENST00000522855 FARP1Q9Y4F1 1045 aaPredicted RBP12.21□□□□□ -0.45
SKP1-210ENST00000522855 MNX1P50219 401 aaPredicted RBP12.1□□□□□ -0.47
SKP1-210ENST00000522855 CD44P16070 742 aaKnown RBP12.07□□□□□ -0.48
SKP1-210ENST00000522855 FKBP8Q14318 412 aa12.04□□□□□ -0.48
SKP1-210ENST00000522855 GABBR2O75899 941 aa12.01□□□□□ -0.49
SKP1-210ENST00000522855 ZNF579Q8NAF0 562 aaKnown RBP11.97□□□□□ -0.49
SKP1-210ENST00000522855 NPM1P06748 294 aaKnown RBP eCLIP11.91□□□□□ -0.5
SKP1-210ENST00000522855 ZRANB1Q9UGI0 708 aa11.91□□□□□ -0.5
SKP1-210ENST00000522855 CLCN6P51797 869 aa11.87□□□□□ -0.51
SKP1-210ENST00000522855 POTEIP0CG38 1075 aa11.83□□□□□ -0.52
SKP1-210ENST00000522855 MIER1Q8N108 512 aa11.81□□□□□ -0.52
SKP1-210ENST00000522855 PHF12Q96QT6 1004 aa11.81□□□□□ -0.52
SKP1-210ENST00000522855 PAK3O75914 559 aaPredicted RBP11.8□□□□□ -0.52
SKP1-210ENST00000522855 GALR2O43603 387 aaPredicted RBP11.77□□□□□ -0.53
SKP1-210ENST00000522855 CCDC61Q9Y6R9 512 aa11.75□□□□□ -0.53
SKP1-210ENST00000522855 PLEKHG5O94827 1062 aa11.74□□□□□ -0.53
SKP1-210ENST00000522855 RASEFQ8IZ41 740 aa11.74□□□□□ -0.53
SKP1-210ENST00000522855 PLCD3Q8N3E9 789 aa11.74□□□□□ -0.53
SKP1-210ENST00000522855 FBXO3Q9UK99 471 aa11.71□□□□□ -0.53
SKP1-210ENST00000522855 NUBP1P53384 320 aa11.7□□□□□ -0.54
SKP1-210ENST00000522855 TSPYL2Q9H2G4 693 aaPredicted RBP11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 1067.2 ms