Protein–RNA interactions for Protein: A0A5B6

TCRBV3S1, T-cell receptor beta variable 28 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV3S1A0A5B6 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
TCRBV3S1A0A5B6 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC23.65■■□□□ 1.38
TCRBV3S1A0A5B6 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC23.65■■□□□ 1.38
TCRBV3S1A0A5B6 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC23.65■■□□□ 1.38
TCRBV3S1A0A5B6 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC23.64■■□□□ 1.38
TCRBV3S1A0A5B6 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
TCRBV3S1A0A5B6 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
TCRBV3S1A0A5B6 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
TCRBV3S1A0A5B6 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
TCRBV3S1A0A5B6 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC23.63■■□□□ 1.37
TCRBV3S1A0A5B6 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
TCRBV3S1A0A5B6 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
TCRBV3S1A0A5B6 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC23.63■■□□□ 1.37
TCRBV3S1A0A5B6 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
TCRBV3S1A0A5B6 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
TCRBV3S1A0A5B6 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC23.62■■□□□ 1.37
TCRBV3S1A0A5B6 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC23.62■■□□□ 1.37
TCRBV3S1A0A5B6 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC23.62■■□□□ 1.37
TCRBV3S1A0A5B6 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC23.62■■□□□ 1.37
TCRBV3S1A0A5B6 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC23.62■■□□□ 1.37
TCRBV3S1A0A5B6 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC23.62■■□□□ 1.37
TCRBV3S1A0A5B6 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC23.61■■□□□ 1.37
TCRBV3S1A0A5B6 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC23.61■■□□□ 1.37
TCRBV3S1A0A5B6 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC23.61■■□□□ 1.37
TCRBV3S1A0A5B6 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
TCRBV3S1A0A5B6 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC23.61■■□□□ 1.37
TCRBV3S1A0A5B6 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC23.61■■□□□ 1.37
TCRBV3S1A0A5B6 SNAI3-AS1-204ENST00000567997 2048 ntBASIC23.6■■□□□ 1.37
TCRBV3S1A0A5B6 AC092803.2-201ENST00000564287 1899 ntBASIC23.6■■□□□ 1.37
TCRBV3S1A0A5B6 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
TCRBV3S1A0A5B6 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
TCRBV3S1A0A5B6 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
TCRBV3S1A0A5B6 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
TCRBV3S1A0A5B6 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC23.59■■□□□ 1.37
TCRBV3S1A0A5B6 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
TCRBV3S1A0A5B6 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC23.59■■□□□ 1.37
TCRBV3S1A0A5B6 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC23.59■■□□□ 1.37
TCRBV3S1A0A5B6 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC23.58■■□□□ 1.37
TCRBV3S1A0A5B6 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
TCRBV3S1A0A5B6 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC23.58■■□□□ 1.37
TCRBV3S1A0A5B6 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
TCRBV3S1A0A5B6 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
TCRBV3S1A0A5B6 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC23.58■■□□□ 1.36
TCRBV3S1A0A5B6 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
TCRBV3S1A0A5B6 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
TCRBV3S1A0A5B6 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC23.57■■□□□ 1.36
TCRBV3S1A0A5B6 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC23.57■■□□□ 1.36
TCRBV3S1A0A5B6 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC23.56■■□□□ 1.36
TCRBV3S1A0A5B6 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
TCRBV3S1A0A5B6 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC23.55■■□□□ 1.36
TCRBV3S1A0A5B6 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
TCRBV3S1A0A5B6 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
TCRBV3S1A0A5B6 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC23.54■■□□□ 1.36
TCRBV3S1A0A5B6 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC23.53■■□□□ 1.36
TCRBV3S1A0A5B6 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC23.53■■□□□ 1.36
TCRBV3S1A0A5B6 MEST-211ENST00000437945 1455 ntTSL 5 BASIC23.53■■□□□ 1.36
TCRBV3S1A0A5B6 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC23.53■■□□□ 1.36
TCRBV3S1A0A5B6 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
TCRBV3S1A0A5B6 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
TCRBV3S1A0A5B6 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC23.52■■□□□ 1.36
TCRBV3S1A0A5B6 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
TCRBV3S1A0A5B6 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
TCRBV3S1A0A5B6 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
TCRBV3S1A0A5B6 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
TCRBV3S1A0A5B6 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
TCRBV3S1A0A5B6 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC23.51■■□□□ 1.35
TCRBV3S1A0A5B6 DENR-202ENST00000455982 1052 ntTSL 5 BASIC23.51■■□□□ 1.35
TCRBV3S1A0A5B6 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC23.51■■□□□ 1.35
TCRBV3S1A0A5B6 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC23.51■■□□□ 1.35
TCRBV3S1A0A5B6 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC23.51■■□□□ 1.35
TCRBV3S1A0A5B6 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC23.51■■□□□ 1.35
TCRBV3S1A0A5B6 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
TCRBV3S1A0A5B6 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC23.51■■□□□ 1.35
TCRBV3S1A0A5B6 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC23.51■■□□□ 1.35
TCRBV3S1A0A5B6 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
TCRBV3S1A0A5B6 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC23.5■■□□□ 1.35
TCRBV3S1A0A5B6 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
TCRBV3S1A0A5B6 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC23.49■■□□□ 1.35
TCRBV3S1A0A5B6 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
TCRBV3S1A0A5B6 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC23.49■■□□□ 1.35
TCRBV3S1A0A5B6 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
TCRBV3S1A0A5B6 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
TCRBV3S1A0A5B6 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
TCRBV3S1A0A5B6 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC23.48■■□□□ 1.35
TCRBV3S1A0A5B6 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC23.47■■□□□ 1.35
TCRBV3S1A0A5B6 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
TCRBV3S1A0A5B6 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC23.47■■□□□ 1.35
TCRBV3S1A0A5B6 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
TCRBV3S1A0A5B6 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC23.47■■□□□ 1.35
TCRBV3S1A0A5B6 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
TCRBV3S1A0A5B6 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC23.46■■□□□ 1.35
TCRBV3S1A0A5B6 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC23.46■■□□□ 1.35
TCRBV3S1A0A5B6 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC23.45■■□□□ 1.34
TCRBV3S1A0A5B6 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC23.45■■□□□ 1.34
TCRBV3S1A0A5B6 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC23.45■■□□□ 1.34
TCRBV3S1A0A5B6 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
TCRBV3S1A0A5B6 CEBPA-AS1-201ENST00000592982 2198 ntBASIC23.45■■□□□ 1.34
TCRBV3S1A0A5B6 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC23.45■■□□□ 1.34
TCRBV3S1A0A5B6 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
TCRBV3S1A0A5B6 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC23.44■■□□□ 1.34
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms