RNA–Protein interactions for RNA: ENST00000373264.4

CDK9-201, Transcript of cyclin dependent kinase 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDK9, Length 2,463 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK9-201ENST00000373264 NISCHQ9Y2I1 1504 aa50.38■■■■■ 5.66
CDK9-201ENST00000373264 SHROOM4Q9ULL8 1493 aa42.96■■■■■ 4.47
CDK9-201ENST00000373264 CCDC180Q9P1Z9 1646 aa42.86■■■■■ 4.45
CDK9-201ENST00000373264 ZCCHC6Q5VYS8 1495 aaKnown RBP42.54■■■■■ 4.4
CDK9-201ENST00000373264 DCAF8L2P0C7V8 631 aa42.05■■■■■ 4.32
CDK9-201ENST00000373264 SUPT5HO00267 1087 aaKnown RBP41.92■■■■■ 4.3
CDK9-201ENST00000373264 DCAF1Q9Y4B6 1507 aa41.19■■■■■ 4.18
CDK9-201ENST00000373264 CHIC1Q5VXU3 224 aa40.54■■■■■ 4.08
CDK9-201ENST00000373264 MYO15BQ96JP2 1530 aa40.41■■■■■ 4.06
CDK9-201ENST00000373264 SCRIBQ14160 1630 aa40.34■■■■■ 4.05
CDK9-201ENST00000373264 ABCC9O60706 1549 aa40.21■■■■■ 4.03
CDK9-201ENST00000373264 RSF1Q96T23 1441 aaPredicted RBP39.8■■■■□ 3.96
CDK9-201ENST00000373264 NACADO15069 1562 aa39.71■■■■□ 3.95
CDK9-201ENST00000373264 CECR2Q9BXF3 1484 aa39.46■■■■□ 3.91
CDK9-201ENST00000373264 LOC105371045A0A1W2PR82 267 aa39.45■■■■□ 3.91
CDK9-201ENST00000373264 RB1CC1Q8TDY2 1594 aa39.39■■■■□ 3.9
CDK9-201ENST00000373264 MROH2BQ7Z745 1585 aa39.24■■■■□ 3.87
CDK9-201ENST00000373264 WIZO95785 1651 aa39.03■■■■□ 3.84
CDK9-201ENST00000373264 PCGF6Q9BYE7 350 aa39.01■■■■□ 3.83
CDK9-201ENST00000373264 TRIM41Q8WV44 630 aa38.96■■■■□ 3.83
CDK9-201ENST00000373264 FAM9AQ8IZU1 332 aaPredicted RBP38.8■■■■□ 3.8
CDK9-201ENST00000373264 UNC13AQ9UPW8 1703 aa38.73■■■■□ 3.79
CDK9-201ENST00000373264 HRCP23327 699 aa38.68■■■■□ 3.78
CDK9-201ENST00000373264 BAZ1AQ9NRL2 1556 aaPredicted RBP38.66■■■■□ 3.78
CDK9-201ENST00000373264 EHMT2Q96KQ7 1210 aa38.6■■■■□ 3.77
CDK9-201ENST00000373264 PABPN1Q86U42 306 aaKnown RBP eCLIP38.47■■■■□ 3.75
CDK9-201ENST00000373264 SMARCA4P51532 1647 aa38.44■■■■□ 3.74
CDK9-201ENST00000373264 EIF4G1Q04637 1599 aaKnown RBP38.3■■■■□ 3.72
CDK9-201ENST00000373264 TOP2AP11388 1531 aaKnown RBP38.29■■■■□ 3.72
CDK9-201ENST00000373264 BICRAQ9NZM4 1560 aa38.25■■■■□ 3.71
CDK9-201ENST00000373264 CCDC88BA6NC98 1476 aa38.2■■■■□ 3.71
CDK9-201ENST00000373264 TRIM26Q12899 539 aaPredicted RBP38.19■■■■□ 3.7
CDK9-201ENST00000373264 PPARGC1BQ86YN6 1023 aaKnown RBP38.17■■■■□ 3.7
CDK9-201ENST00000373264 SMARCA2P51531 1590 aa38.13■■■■□ 3.69
CDK9-201ENST00000373264 ABCC8Q09428 1581 aa38.09■■■■□ 3.69
CDK9-201ENST00000373264 SOGA1O94964 1423 aa37.66■■■■□ 3.62
CDK9-201ENST00000373264 PEG3Q9GZU2 1588 aa37.63■■■■□ 3.61
CDK9-201ENST00000373264 ATAD2BQ9ULI0 1458 aa37.54■■■■□ 3.6
CDK9-201ENST00000373264 RUSC2Q8N2Y8 1516 aa37.54■■■■□ 3.6
CDK9-201ENST00000373264 BAZ1BQ9UIG0 1483 aaKnown RBP37.41■■■■□ 3.58
CDK9-201ENST00000373264 WRNQ14191 1432 aaPredicted RBP eCLIP37.36■■■■□ 3.57
CDK9-201ENST00000373264 CSRNP3Q8WYN3 585 aa37.31■■■■□ 3.56
CDK9-201ENST00000373264 SYNJ1O43426 1573 aa37.26■■■■□ 3.56
CDK9-201ENST00000373264 CEP162Q5TB80 1403 aa37.25■■■■□ 3.55
CDK9-201ENST00000373264 TTBK1Q5TCY1 1321 aaPredicted RBP37.24■■■■□ 3.55
CDK9-201ENST00000373264 UBTFP17480 764 aaKnown RBP37.18■■■■□ 3.54
CDK9-201ENST00000373264 TNIKQ9UKE5 1360 aa37.14■■■■□ 3.54
CDK9-201ENST00000373264 EEA1Q15075 1411 aa37.13■■■■□ 3.53
CDK9-201ENST00000373264 ZEB1P37275 1124 aaPredicted RBP37.04■■■■□ 3.52
CDK9-201ENST00000373264 GOLGA3Q08378 1498 aa36.98■■■■□ 3.51
CDK9-201ENST00000373264 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP36.92■■■■□ 3.5
CDK9-201ENST00000373264 NCAPD3P42695 1498 aa36.8■■■■□ 3.48
CDK9-201ENST00000373264 CEP164Q9UPV0 1460 aa36.79■■■■□ 3.48
CDK9-201ENST00000373264 HMGXB3Q12766 1538 aa36.74■■■■□ 3.47
CDK9-201ENST00000373264 KIF21BO75037 1637 aa36.74■■■■□ 3.47
CDK9-201ENST00000373264 TOP2BQ02880 1626 aa36.73■■■■□ 3.47
CDK9-201ENST00000373264 RAPGEF2Q9Y4G8 1499 aa36.72■■■■□ 3.47
CDK9-201ENST00000373264 RANGAP1P46060 587 aaPredicted RBP36.71■■■■□ 3.47
CDK9-201ENST00000373264 CCER1Q8TC90 406 aaPredicted RBP36.67■■■■□ 3.46
CDK9-201ENST00000373264 CLIP1P30622 1438 aa36.61■■■■□ 3.45
CDK9-201ENST00000373264 BIVM-ERCC5R4GMW8 1640 aa36.59■■■■□ 3.45
CDK9-201ENST00000373264 CUX1P39880 1505 aa36.53■■■■□ 3.44
CDK9-201ENST00000373264 CFTRP13569 1480 aa36.46■■■■□ 3.43
CDK9-201ENST00000373264 VPS8Q8N3P4 1428 aa36.37■■■■□ 3.41
CDK9-201ENST00000373264 PRXQ9BXM0 1461 aa36.31■■■■□ 3.4
CDK9-201ENST00000373264 HNRNPUL2Q1KMD3 747 aaKnown RBP36.24■■■■□ 3.39
CDK9-201ENST00000373264 KIF27Q86VH2 1401 aa36.19■■■■□ 3.38
CDK9-201ENST00000373264 ERICH3Q5RHP9 1530 aa36.18■■■■□ 3.38
CDK9-201ENST00000373264 APLP2Q06481 763 aa36.15■■■■□ 3.38
CDK9-201ENST00000373264 CC2D2AQ9P2K1 1620 aa36.14■■■■□ 3.38
CDK9-201ENST00000373264 CADPSQ9ULU8 1353 aa36.12■■■■□ 3.37
CDK9-201ENST00000373264 ARAP1Q96P48 1450 aa36.1■■■■□ 3.37
CDK9-201ENST00000373264 PRDM2Q13029 1718 aa36.07■■■■□ 3.37
CDK9-201ENST00000373264 CUX2O14529 1486 aa35.99■■■■□ 3.35
CDK9-201ENST00000373264 KANK4Q5T7N3 995 aaPredicted RBP35.96■■■■□ 3.35
CDK9-201ENST00000373264 FGD5Q6ZNL6 1462 aa35.92■■■■□ 3.34
CDK9-201ENST00000373264 IGF1RP08069 1367 aa35.9■■■■□ 3.34
CDK9-201ENST00000373264 ARHGAP35Q9NRY4 1499 aa35.83■■■■□ 3.33
CDK9-201ENST00000373264 FANCD2Q9BXW9 1451 aa35.8■■■■□ 3.32
CDK9-201ENST00000373264 NESP48681 1621 aa35.79■■■■□ 3.32
CDK9-201ENST00000373264 DIEXFQ68CQ4 756 aaKnown RBP35.75■■■■□ 3.31
CDK9-201ENST00000373264 CARMIL1Q5VZK9 1371 aa35.72■■■■□ 3.31
CDK9-201ENST00000373264 RAD54L2Q9Y4B4 1467 aa35.67■■■■□ 3.3
CDK9-201ENST00000373264 DNAJC5BQ9UF47 199 aa35.6■■■■□ 3.29
CDK9-201ENST00000373264 ZNF316A6NFI3 1004 aaPredicted RBP35.55■■■■□ 3.28
CDK9-201ENST00000373264 TOPBP1Q92547 1522 aa35.54■■■■□ 3.28
CDK9-201ENST00000373264 P3H3Q8IVL6 736 aa35.53■■■■□ 3.28
CDK9-201ENST00000373264 POLA1P09884 1462 aaPredicted RBP35.53■■■■□ 3.28
CDK9-201ENST00000373264 DNMBPQ6XZF7 1577 aa35.52■■■■□ 3.28
CDK9-201ENST00000373264 SCAF1Q9H7N4 1312 aaKnown RBP35.51■■■■□ 3.28
CDK9-201ENST00000373264 RRBP1Q9P2E9 1410 aaKnown RBP35.46■■■■□ 3.27
CDK9-201ENST00000373264 ITGAEP38570 1179 aa35.45■■■■□ 3.27
CDK9-201ENST00000373264 ABCA10Q8WWZ4 1543 aa35.41■■■■□ 3.26
CDK9-201ENST00000373264 DHX57Q6P158 1386 aaKnown RBP35.4■■■■□ 3.26
CDK9-201ENST00000373264 CCNB3Q8WWL7 1395 aa35.37■■■■□ 3.25
CDK9-201ENST00000373264 URB2Q14146 1524 aaKnown RBP35.35■■■■□ 3.25
CDK9-201ENST00000373264 TIAM1Q13009 1591 aa35.33■■■■□ 3.25
CDK9-201ENST00000373264 ATP1B4Q9UN42 357 aaPredicted RBP35.31■■■■□ 3.24
CDK9-201ENST00000373264 NEUROD1Q13562 356 aa35.3■■■■□ 3.24
CDK9-201ENST00000373264 FHOD3Q2V2M9 1422 aa35.28■■■■□ 3.24
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms