RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 NISCHQ9Y2I1 1504 aa51.73■■■■■ 5.87
TRIM54-201ENST00000296098 CCDC180Q9P1Z9 1646 aa44.58■■■■■ 4.73
TRIM54-201ENST00000296098 ZCCHC6Q5VYS8 1495 aaKnown RBP43.69■■■■■ 4.58
TRIM54-201ENST00000296098 SHROOM4Q9ULL8 1493 aa43.15■■■■■ 4.5
TRIM54-201ENST00000296098 DCAF1Q9Y4B6 1507 aa42.68■■■■■ 4.42
TRIM54-201ENST00000296098 DCAF8L2P0C7V8 631 aa42.5■■■■■ 4.39
TRIM54-201ENST00000296098 SUPT5HO00267 1087 aaKnown RBP41.99■■■■■ 4.31
TRIM54-201ENST00000296098 MYO15BQ96JP2 1530 aa41.73■■■■■ 4.27
TRIM54-201ENST00000296098 ABCC9O60706 1549 aa41.34■■■■■ 4.21
TRIM54-201ENST00000296098 SCRIBQ14160 1630 aa41.31■■■■■ 4.2
TRIM54-201ENST00000296098 NACADO15069 1562 aa41.24■■■■■ 4.19
TRIM54-201ENST00000296098 RB1CC1Q8TDY2 1594 aa40.68■■■■■ 4.1
TRIM54-201ENST00000296098 CHIC1Q5VXU3 224 aa40.67■■■■■ 4.1
TRIM54-201ENST00000296098 RSF1Q96T23 1441 aaPredicted RBP40.56■■■■■ 4.08
TRIM54-201ENST00000296098 CECR2Q9BXF3 1484 aa40.18■■■■■ 4.02
TRIM54-201ENST00000296098 MROH2BQ7Z745 1585 aa40.07■■■■■ 4.01
TRIM54-201ENST00000296098 UNC13AQ9UPW8 1703 aa40.02■■■■■ 4
TRIM54-201ENST00000296098 BAZ1AQ9NRL2 1556 aaPredicted RBP39.85■■■■□ 3.97
TRIM54-201ENST00000296098 WIZO95785 1651 aa39.84■■■■□ 3.97
TRIM54-201ENST00000296098 SMARCA4P51532 1647 aa39.58■■■■□ 3.93
TRIM54-201ENST00000296098 BICRAQ9NZM4 1560 aa39.49■■■■□ 3.91
TRIM54-201ENST00000296098 TOP2AP11388 1531 aaKnown RBP39.38■■■■□ 3.89
TRIM54-201ENST00000296098 TRIM41Q8WV44 630 aa39.31■■■■□ 3.88
TRIM54-201ENST00000296098 LOC105371045A0A1W2PR82 267 aa39.23■■■■□ 3.87
TRIM54-201ENST00000296098 EIF4G1Q04637 1599 aaKnown RBP39.21■■■■□ 3.87
TRIM54-201ENST00000296098 PABPN1Q86U42 306 aaKnown RBP eCLIP39.21■■■■□ 3.87
TRIM54-201ENST00000296098 SMARCA2P51531 1590 aa39.07■■■■□ 3.84
TRIM54-201ENST00000296098 CCDC88BA6NC98 1476 aa39.01■■■■□ 3.83
TRIM54-201ENST00000296098 PEG3Q9GZU2 1588 aa38.97■■■■□ 3.83
TRIM54-201ENST00000296098 FAM9AQ8IZU1 332 aaPredicted RBP38.75■■■■□ 3.79
TRIM54-201ENST00000296098 ABCC8Q09428 1581 aa38.63■■■■□ 3.77
TRIM54-201ENST00000296098 ATAD2BQ9ULI0 1458 aa38.63■■■■□ 3.77
TRIM54-201ENST00000296098 PCGF6Q9BYE7 350 aa38.59■■■■□ 3.77
TRIM54-201ENST00000296098 BAZ1BQ9UIG0 1483 aaKnown RBP38.51■■■■□ 3.75
TRIM54-201ENST00000296098 HRCP23327 699 aa38.31■■■■□ 3.72
TRIM54-201ENST00000296098 EHMT2Q96KQ7 1210 aa38.26■■■■□ 3.72
TRIM54-201ENST00000296098 TRIM26Q12899 539 aaPredicted RBP38.22■■■■□ 3.71
TRIM54-201ENST00000296098 WRNQ14191 1432 aaPredicted RBP eCLIP38.16■■■■□ 3.7
TRIM54-201ENST00000296098 HMGXB3Q12766 1538 aa38.13■■■■□ 3.69
TRIM54-201ENST00000296098 EEA1Q15075 1411 aa38.1■■■■□ 3.69
TRIM54-201ENST00000296098 SOGA1O94964 1423 aa38.08■■■■□ 3.69
TRIM54-201ENST00000296098 NCAPD3P42695 1498 aa38.05■■■■□ 3.68
TRIM54-201ENST00000296098 SYNJ1O43426 1573 aa38.02■■■■□ 3.68
TRIM54-201ENST00000296098 RUSC2Q8N2Y8 1516 aa37.89■■■■□ 3.66
TRIM54-201ENST00000296098 CSRNP3Q8WYN3 585 aa37.82■■■■□ 3.65
TRIM54-201ENST00000296098 TNIKQ9UKE5 1360 aa37.75■■■■□ 3.63
TRIM54-201ENST00000296098 TOP2BQ02880 1626 aa37.72■■■■□ 3.63
TRIM54-201ENST00000296098 GOLGA3Q08378 1498 aa37.71■■■■□ 3.63
TRIM54-201ENST00000296098 CEP162Q5TB80 1403 aa37.71■■■■□ 3.63
TRIM54-201ENST00000296098 BIVM-ERCC5R4GMW8 1640 aa37.66■■■■□ 3.62
TRIM54-201ENST00000296098 KIF21BO75037 1637 aa37.62■■■■□ 3.61
TRIM54-201ENST00000296098 CEP164Q9UPV0 1460 aa37.58■■■■□ 3.61
TRIM54-201ENST00000296098 CFTRP13569 1480 aa37.54■■■■□ 3.6
TRIM54-201ENST00000296098 UBTFP17480 764 aaKnown RBP37.51■■■■□ 3.59
TRIM54-201ENST00000296098 PRDM2Q13029 1718 aa37.48■■■■□ 3.59
TRIM54-201ENST00000296098 CC2D2AQ9P2K1 1620 aa37.4■■■■□ 3.58
TRIM54-201ENST00000296098 CUX1P39880 1505 aa37.4■■■■□ 3.58
TRIM54-201ENST00000296098 PPARGC1BQ86YN6 1023 aaKnown RBP37.38■■■■□ 3.57
TRIM54-201ENST00000296098 RAPGEF2Q9Y4G8 1499 aa37.25■■■■□ 3.55
TRIM54-201ENST00000296098 ZEB1P37275 1124 aaPredicted RBP37.2■■■■□ 3.55
TRIM54-201ENST00000296098 CADPSQ9ULU8 1353 aa37.18■■■■□ 3.54
TRIM54-201ENST00000296098 CLIP1P30622 1438 aa37.15■■■■□ 3.54
TRIM54-201ENST00000296098 ERICH3Q5RHP9 1530 aa37.15■■■■□ 3.54
TRIM54-201ENST00000296098 PRXQ9BXM0 1461 aa37.09■■■■□ 3.53
TRIM54-201ENST00000296098 KIF27Q86VH2 1401 aa37.07■■■■□ 3.52
TRIM54-201ENST00000296098 VPS8Q8N3P4 1428 aa36.97■■■■□ 3.51
TRIM54-201ENST00000296098 TTBK1Q5TCY1 1321 aaPredicted RBP36.93■■■■□ 3.5
TRIM54-201ENST00000296098 FANCD2Q9BXW9 1451 aa36.84■■■■□ 3.49
TRIM54-201ENST00000296098 FGD5Q6ZNL6 1462 aa36.82■■■■□ 3.48
TRIM54-201ENST00000296098 CUX2O14529 1486 aa36.79■■■■□ 3.48
TRIM54-201ENST00000296098 RANGAP1P46060 587 aaPredicted RBP36.7■■■■□ 3.47
TRIM54-201ENST00000296098 DNMBPQ6XZF7 1577 aa36.69■■■■□ 3.46
TRIM54-201ENST00000296098 ARAP1Q96P48 1450 aa36.67■■■■□ 3.46
TRIM54-201ENST00000296098 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP36.64■■■■□ 3.46
TRIM54-201ENST00000296098 NESP48681 1621 aa36.64■■■■□ 3.46
TRIM54-201ENST00000296098 LAMC3Q9Y6N6 1575 aa36.62■■■■□ 3.45
TRIM54-201ENST00000296098 APLP2Q06481 763 aa36.61■■■■□ 3.45
TRIM54-201ENST00000296098 IGF1RP08069 1367 aa36.61■■■■□ 3.45
TRIM54-201ENST00000296098 CCER1Q8TC90 406 aaPredicted RBP36.59■■■■□ 3.45
TRIM54-201ENST00000296098 TOPBP1Q92547 1522 aa36.56■■■■□ 3.44
TRIM54-201ENST00000296098 POLA1P09884 1462 aaPredicted RBP36.48■■■■□ 3.43
TRIM54-201ENST00000296098 CARMIL1Q5VZK9 1371 aa36.47■■■■□ 3.43
TRIM54-201ENST00000296098 ABCA10Q8WWZ4 1543 aa36.46■■■■□ 3.43
TRIM54-201ENST00000296098 ARHGAP35Q9NRY4 1499 aa36.45■■■■□ 3.43
TRIM54-201ENST00000296098 RAD54L2Q9Y4B4 1467 aa36.41■■■■□ 3.42
TRIM54-201ENST00000296098 URB2Q14146 1524 aaKnown RBP36.34■■■■□ 3.41
TRIM54-201ENST00000296098 WDR97A6NE52 1622 aa36.31■■■■□ 3.4
TRIM54-201ENST00000296098 PDS5BQ9NTI5 1447 aa36.29■■■■□ 3.4
TRIM54-201ENST00000296098 CUL7Q14999 1698 aa36.28■■■■□ 3.4
TRIM54-201ENST00000296098 KIF21AQ7Z4S6 1674 aa36.21■■■■□ 3.39
TRIM54-201ENST00000296098 HNRNPUL2Q1KMD3 747 aaKnown RBP36.2■■■■□ 3.39
TRIM54-201ENST00000296098 DNAJC5BQ9UF47 199 aa36.18■■■■□ 3.38
TRIM54-201ENST00000296098 KANK4Q5T7N3 995 aaPredicted RBP36.14■■■■□ 3.38
TRIM54-201ENST00000296098 ABCA5Q8WWZ7 1642 aa36.12■■■■□ 3.37
TRIM54-201ENST00000296098 CTTNBP2Q8WZ74 1663 aa36.08■■■■□ 3.37
TRIM54-201ENST00000296098 MAP3K1Q13233 1512 aa36.05■■■■□ 3.36
TRIM54-201ENST00000296098 TIAM1Q13009 1591 aa36.04■■■■□ 3.36
TRIM54-201ENST00000296098 RRBP1Q9P2E9 1410 aaKnown RBP36.02■■■■□ 3.36
TRIM54-201ENST00000296098 EFCAB5A4FU69 1503 aa36.01■■■■□ 3.35
TRIM54-201ENST00000296098 FHAD1B1AJZ9 1412 aa35.99■■■■□ 3.35
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms