RNA–Protein interactions for RNA: YEL012W

UBC8, Transcript of Ubiquitin-conjugating enzyme that regulates gluconeogenesis, yeast

Gene UBC8, Length 657 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBC8	YEL012W	MTC1	P47018	478 aa	Known RBP	11.76	□□□□□ -0.53
UBC8	YEL012W	DRS1	P32892	752 aa	Known RBP	11.52	□□□□□ -0.57
UBC8	YEL012W	FAP1	P53971	965 aa		11.17	□□□□□ -0.62
UBC8	YEL012W	PRY3	P47033	881 aa		10.51	□□□□□ -0.73
UBC8	YEL012W	AAD16	Q02895	342 aa		10.19	□□□□□ -0.78
UBC8	YEL012W	PRI1	P10363	409 aa		10.17	□□□□□ -0.78
UBC8	YEL012W	BFR2	Q06631	534 aa	Known RBP	10.06	□□□□□ -0.8
UBC8	YEL012W	HAA1	Q12753	694 aa	Known RBP	9.86	□□□□□ -0.83
UBC8	YEL012W	YCK3	P39962	524 aa		9.85	□□□□□ -0.83
UBC8	YEL012W	ISW2	Q08773	1120 aa		9.84	□□□□□ -0.83
UBC8	YEL012W	AVT3	P36062	692 aa		9.73	□□□□□ -0.85
UBC8	YEL012W	DIP2	Q12220	943 aa	Predicted RBP	9.73	□□□□□ -0.85
UBC8	YEL012W	RPG1	P38249	964 aa	Known RBP	9.71	□□□□□ -0.86
UBC8	YEL012W	TFA1	P36100	482 aa		9.69	□□□□□ -0.86
UBC8	YEL012W	TSR3	Q12094	313 aa	Known RBP	9.56	□□□□□ -0.88
UBC8	YEL012W	MON2	P48563	1636 aa	Predicted RBP	9.34	□□□□□ -0.91
UBC8	YEL012W	INO80	P53115	1489 aa		9.31	□□□□□ -0.92
UBC8	YEL012W	RSE1	Q04693	1361 aa	Known RBP	9.3	□□□□□ -0.92
UBC8	YEL012W	MRPL32	P25348	183 aa		9.23	□□□□□ -0.93
UBC8	YEL012W	RPL17A	P05740	184 aa	Known RBP	9.01	□□□□□ -0.97
UBC8	YEL012W	YGL015C	P33199	130 aa		9.01	□□□□□ -0.97
UBC8	YEL012W	RPL17B	P46990	184 aa	Known RBP	9.01	□□□□□ -0.97
UBC8	YEL012W	REB1	P21538	810 aa		9	□□□□□ -0.97
UBC8	YEL012W	DNA2	P38859	1522 aa		8.91	□□□□□ -0.98
UBC8	YEL012W	SWR1	Q05471	1514 aa		8.85	□□□□□ -0.99
UBC8	YEL012W	KOG1	P38873	1557 aa		8.69	□□□□□ -1.02
UBC8	YEL012W	TY1B-DR4	Q07793	1604 aa		8.69	□□□□□ -1.02
UBC8	YEL012W	TCB3	Q03640	1545 aa	Known RBP	8.63	□□□□□ -1.03
UBC8	YEL012W	CDC27	P38042	758 aa		8.62	□□□□□ -1.03
UBC8	YEL012W	SPT21	P35209	758 aa		8.58	□□□□□ -1.04
UBC8	YEL012W	YKR023W	P36119	530 aa	Known RBP	8.54	□□□□□ -1.04
UBC8	YEL012W	BUD31	P25337	157 aa	Predicted RBP	8.51	□□□□□ -1.05
UBC8	YEL012W	UBP10	P53874	792 aa	Predicted RBP	8.5	□□□□□ -1.05
UBC8	YEL012W	RIM101	P33400	625 aa		8.45	□□□□□ -1.06
UBC8	YEL012W	MAP2	P38174	421 aa	Known RBP	8.43	□□□□□ -1.06
UBC8	YEL012W	SGS1	P35187	1447 aa		8.42	□□□□□ -1.06
UBC8	YEL012W	HO	P09932	586 aa		8.38	□□□□□ -1.07
UBC8	YEL012W	HSL1	P34244	1518 aa		8.37	□□□□□ -1.07
UBC8	YEL012W	TFC8	Q12308	588 aa		8.36	□□□□□ -1.07
UBC8	YEL012W	SPT6	P23615	1451 aa	Known RBP	8.34	□□□□□ -1.07
UBC8	YEL012W	DCD1	P06773	312 aa		8.34	□□□□□ -1.07
UBC8	YEL012W	RQC2	Q12532	1038 aa	Known RBP	8.3	□□□□□ -1.08
UBC8	YEL012W	PTP3	P40048	928 aa		8.24	□□□□□ -1.09
UBC8	YEL012W	ECM5	Q03214	1411 aa		8.23	□□□□□ -1.09
UBC8	YEL012W	SPA2	P23201	1466 aa	Known RBP	8.23	□□□□□ -1.09
UBC8	YEL012W	OXP1	P28273	1286 aa		8.22	□□□□□ -1.09
UBC8	YEL012W	TIF4632	P39936	914 aa	Known RBP	8.18	□□□□□ -1.1
UBC8	YEL012W	HIR3	P47171	1648 aa		8.18	□□□□□ -1.1
UBC8	YEL012W	SCY1	P53009	804 aa		8.17	□□□□□ -1.1
UBC8	YEL012W	SSP1	P38871	571 aa		8.15	□□□□□ -1.1
UBC8	YEL012W	TGL3	P40308	642 aa		8.13	□□□□□ -1.11
UBC8	YEL012W	SLX5	P32828	619 aa	Known RBP	8.12	□□□□□ -1.11
UBC8	YEL012W	BUD4	P47136	1447 aa		8.12	□□□□□ -1.11
UBC8	YEL012W	THO2	P53552	1597 aa	Known RBP	8.1	□□□□□ -1.11
UBC8	YEL012W	MDS3	P53094	1487 aa		8.09	□□□□□ -1.11
UBC8	YEL012W	UBP9	P39967	754 aa		8.09	□□□□□ -1.11
UBC8	YEL012W	BCH2	P36122	765 aa		8.08	□□□□□ -1.12
UBC8	YEL012W	SIS1	P25294	352 aa	Known RBP	8.06	□□□□□ -1.12
UBC8	YEL012W	DMA1	P38823	416 aa		8.05	□□□□□ -1.12
UBC8	YEL012W	YAH1	Q12184	172 aa	Known RBP	8.04	□□□□□ -1.12
UBC8	YEL012W	YLR271W	Q06152	274 aa		8.01	□□□□□ -1.13
UBC8	YEL012W	XRN1	P22147	1528 aa	Known RBP	7.99	□□□□□ -1.13
UBC8	YEL012W	PEP1	P32319	1579 aa		7.99	□□□□□ -1.13
UBC8	YEL012W	YIL055C	P40523	627 aa	Known RBP	7.97	□□□□□ -1.13
UBC8	YEL012W	REV3	P14284	1504 aa		7.94	□□□□□ -1.14
UBC8	YEL012W	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	7.93	□□□□□ -1.14	not detected
UBC8	YEL012W	ATG2	P53855	1592 aa		7.92	□□□□□ -1.14
UBC8	YEL012W	RSM7	P47150	247 aa		7.91	□□□□□ -1.14
UBC8	YEL012W	EPS1	P40557	701 aa		7.88	□□□□□ -1.15
UBC8	YEL012W	BPT1	P14772	1559 aa		7.87	□□□□□ -1.15
UBC8	YEL012W	BDF1	P35817	686 aa		7.85	□□□□□ -1.15
UBC8	YEL012W	MGA2	P40578	1113 aa		7.81	□□□□□ -1.16
UBC8	YEL012W	TAF2	P23255	1407 aa		7.79	□□□□□ -1.16
UBC8	YEL012W	PSD2	P53037	1138 aa	Known RBP	7.78	□□□□□ -1.16
UBC8	YEL012W	CST9	Q06032	482 aa		7.78	□□□□□ -1.16
UBC8	YEL012W	SKI3	P17883	1432 aa	Known RBP	7.76	□□□□□ -1.17
UBC8	YEL012W	AI2	P03876	854 aa		7.75	□□□□□ -1.17
UBC8	YEL012W	YCF1	P39109	1515 aa	Known RBP	7.73	□□□□□ -1.17
UBC8	YEL012W	BBC1	P47068	1157 aa		7.73	□□□□□ -1.17
UBC8	YEL012W	MST1	P07236	462 aa		7.71	□□□□□ -1.18
UBC8	YEL012W	SSN2	P38931	1420 aa		7.69	□□□□□ -1.18
UBC8	YEL012W	SSK2	P53599	1579 aa		7.69	□□□□□ -1.18
UBC8	YEL012W	SIN3	P22579	1536 aa		7.68	□□□□□ -1.18
UBC8	YEL012W	YOR238W	Q08634	303 aa		7.67	□□□□□ -1.18
UBC8	YEL012W	YBL029C-A	Q3E756	94 aa		7.66	□□□□□ -1.18
UBC8	YEL012W	UFD4	P33202	1483 aa		7.62	□□□□□ -1.19
UBC8	YEL012W	ESP1	Q03018	1630 aa		7.61	□□□□□ -1.19
UBC8	YEL012W	NSR1	P27476	414 aa	Known RBP RIP-Chip data	7.61	□□□□□ -1.19	not detected
UBC8	YEL012W	SAS10	Q12136	610 aa	Predicted RBP	7.6	□□□□□ -1.19
UBC8	YEL012W	YAP5	P40574	245 aa		7.56	□□□□□ -1.2
UBC8	YEL012W	VNX1	P42839	908 aa		7.56	□□□□□ -1.2
UBC8	YEL012W	DNF1	P32660	1571 aa		7.55	□□□□□ -1.2
UBC8	YEL012W	SCC2	Q04002	1493 aa		7.55	□□□□□ -1.2
UBC8	YEL012W	RAM2	P29703	316 aa		7.54	□□□□□ -1.2
UBC8	YEL012W	MRM1	P25270	412 aa		7.53	□□□□□ -1.2
UBC8	YEL012W	ESC1	Q03661	1658 aa	Known RBP	7.53	□□□□□ -1.2
UBC8	YEL012W	CDC25	P04821	1589 aa		7.52	□□□□□ -1.21
UBC8	YEL012W	MIF2	P35201	549 aa		7.52	□□□□□ -1.21
UBC8	YEL012W	SPP1	Q03012	353 aa		7.52	□□□□□ -1.21
UBC8	YEL012W	RCR1	P38212	213 aa		7.51	□□□□□ -1.21

Retrieved 100 of 5,963 RNA–protein pairs in 189.6 ms