Protein–RNA interactions for Protein: Q9Y3Q4

HCN4, Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4, humanhuman

Predictions only

Length 1,203 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HCN4Q9Y3Q4 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC35.85■■■■□ 3.33
HCN4Q9Y3Q4 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC35.56■■■■□ 3.28
HCN4Q9Y3Q4 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC34.81■■■■□ 3.16
HCN4Q9Y3Q4 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC34.74■■■■□ 3.15
HCN4Q9Y3Q4 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC34.57■■■■□ 3.12
HCN4Q9Y3Q4 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC34.55■■■■□ 3.12
HCN4Q9Y3Q4 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC34.26■■■■□ 3.08
HCN4Q9Y3Q4 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC34.18■■■■□ 3.06
HCN4Q9Y3Q4 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC34.18■■■■□ 3.06
HCN4Q9Y3Q4 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC34■■■■□ 3.03
HCN4Q9Y3Q4 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC33.74■■■□□ 2.99
HCN4Q9Y3Q4 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC33.63■■■□□ 2.97
HCN4Q9Y3Q4 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC33.57■■■□□ 2.97
HCN4Q9Y3Q4 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC33.5■■■□□ 2.95
HCN4Q9Y3Q4 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC33.49■■■□□ 2.95
HCN4Q9Y3Q4 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC33.34■■■□□ 2.93
HCN4Q9Y3Q4 ZNRF2P1-201ENST00000441407 443 ntBASIC33.27■■■□□ 2.92
HCN4Q9Y3Q4 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC33.25■■■□□ 2.91
HCN4Q9Y3Q4 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC33.18■■■□□ 2.9
HCN4Q9Y3Q4 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC33.11■■■□□ 2.89
HCN4Q9Y3Q4 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC33.1■■■□□ 2.89
HCN4Q9Y3Q4 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC33.1■■■□□ 2.89
HCN4Q9Y3Q4 AC006077.2-201ENST00000623591 457 ntBASIC33.1■■■□□ 2.89
HCN4Q9Y3Q4 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC32.9■■■□□ 2.86
HCN4Q9Y3Q4 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC32.86■■■□□ 2.85
HCN4Q9Y3Q4 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC32.83■■■□□ 2.85
HCN4Q9Y3Q4 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC32.76■■■□□ 2.83
HCN4Q9Y3Q4 INO80B-203ENST00000409917 796 ntTSL 2 BASIC32.7■■■□□ 2.83
HCN4Q9Y3Q4 AL356512.1-201ENST00000607453 1739 ntBASIC32.65■■■□□ 2.82
HCN4Q9Y3Q4 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC32.63■■■□□ 2.81
HCN4Q9Y3Q4 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC32.56■■■□□ 2.8
HCN4Q9Y3Q4 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC32.54■■■□□ 2.8
HCN4Q9Y3Q4 AP002365.1-201ENST00000603448 772 ntBASIC32.38■■■□□ 2.77
HCN4Q9Y3Q4 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC32.37■■■□□ 2.77
HCN4Q9Y3Q4 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC32.21■■■□□ 2.75
HCN4Q9Y3Q4 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC32.21■■■□□ 2.75
HCN4Q9Y3Q4 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC32.13■■■□□ 2.73
HCN4Q9Y3Q4 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC32.09■■■□□ 2.73
HCN4Q9Y3Q4 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC32.07■■■□□ 2.72
HCN4Q9Y3Q4 AC015813.7-201ENST00000623294 581 ntBASIC32.04■■■□□ 2.72
HCN4Q9Y3Q4 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC31.95■■■□□ 2.71
HCN4Q9Y3Q4 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC31.92■■■□□ 2.7
HCN4Q9Y3Q4 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC31.91■■■□□ 2.7
HCN4Q9Y3Q4 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC31.9■■■□□ 2.7
HCN4Q9Y3Q4 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC31.87■■■□□ 2.69
HCN4Q9Y3Q4 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC31.79■■■□□ 2.68
HCN4Q9Y3Q4 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC31.72■■■□□ 2.67
HCN4Q9Y3Q4 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC31.7■■■□□ 2.67
HCN4Q9Y3Q4 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC31.69■■■□□ 2.66
HCN4Q9Y3Q4 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
HCN4Q9Y3Q4 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
HCN4Q9Y3Q4 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC31.57■■■□□ 2.64
HCN4Q9Y3Q4 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
HCN4Q9Y3Q4 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC31.48■■■□□ 2.63
HCN4Q9Y3Q4 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC31.47■■■□□ 2.63
HCN4Q9Y3Q4 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC31.41■■■□□ 2.62
HCN4Q9Y3Q4 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC31.39■■■□□ 2.62
HCN4Q9Y3Q4 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC31.38■■■□□ 2.61
HCN4Q9Y3Q4 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC31.38■■■□□ 2.61
HCN4Q9Y3Q4 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
HCN4Q9Y3Q4 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC31.35■■■□□ 2.61
HCN4Q9Y3Q4 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
HCN4Q9Y3Q4 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC31.32■■■□□ 2.6
HCN4Q9Y3Q4 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC31.29■■■□□ 2.6
HCN4Q9Y3Q4 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC31.27■■■□□ 2.6
HCN4Q9Y3Q4 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
HCN4Q9Y3Q4 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC31.23■■■□□ 2.59
HCN4Q9Y3Q4 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC31.23■■■□□ 2.59
HCN4Q9Y3Q4 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC31.2■■■□□ 2.59
HCN4Q9Y3Q4 RPS2P35-201ENST00000443417 897 ntBASIC31.09■■■□□ 2.57
HCN4Q9Y3Q4 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC31.07■■■□□ 2.56
HCN4Q9Y3Q4 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC31.03■■■□□ 2.56
HCN4Q9Y3Q4 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC31.03■■■□□ 2.56
HCN4Q9Y3Q4 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC31.02■■■□□ 2.56
HCN4Q9Y3Q4 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
HCN4Q9Y3Q4 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
HCN4Q9Y3Q4 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
HCN4Q9Y3Q4 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC30.92■■■□□ 2.54
HCN4Q9Y3Q4 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
HCN4Q9Y3Q4 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC30.88■■■□□ 2.53
HCN4Q9Y3Q4 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
HCN4Q9Y3Q4 DYNLL1-208ENST00000550178 581 ntBASIC30.88■■■□□ 2.53
HCN4Q9Y3Q4 HES6-203ENST00000409160 1600 ntTSL 2 BASIC30.85■■■□□ 2.53
HCN4Q9Y3Q4 RARRES2P7-201ENST00000567349 469 ntBASIC30.85■■■□□ 2.53
HCN4Q9Y3Q4 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
HCN4Q9Y3Q4 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
HCN4Q9Y3Q4 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC30.79■■■□□ 2.52
HCN4Q9Y3Q4 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC30.77■■■□□ 2.52
HCN4Q9Y3Q4 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC30.77■■■□□ 2.52
HCN4Q9Y3Q4 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC30.76■■■□□ 2.52
HCN4Q9Y3Q4 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC30.76■■■□□ 2.51
HCN4Q9Y3Q4 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC30.75■■■□□ 2.51
HCN4Q9Y3Q4 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
HCN4Q9Y3Q4 AC097358.2-201ENST00000607541 1159 ntBASIC30.69■■■□□ 2.5
HCN4Q9Y3Q4 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
HCN4Q9Y3Q4 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC30.67■■■□□ 2.5
HCN4Q9Y3Q4 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC30.63■■■□□ 2.49
HCN4Q9Y3Q4 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC30.61■■■□□ 2.49
HCN4Q9Y3Q4 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC30.61■■■□□ 2.49
HCN4Q9Y3Q4 AL031258.1-201ENST00000623562 325 ntBASIC30.57■■■□□ 2.48
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms