Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC38.12■■■■□ 3.69
LRCH3Q96II8 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC37.81■■■■□ 3.64
LRCH3Q96II8 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC37.45■■■■□ 3.59
LRCH3Q96II8 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC36.89■■■■□ 3.5
LRCH3Q96II8 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC36.73■■■■□ 3.47
LRCH3Q96II8 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC36.71■■■■□ 3.47
LRCH3Q96II8 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC36.62■■■■□ 3.45
LRCH3Q96II8 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC36.43■■■■□ 3.42
LRCH3Q96II8 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC36.38■■■■□ 3.41
LRCH3Q96II8 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC36.15■■■■□ 3.38
LRCH3Q96II8 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC36.07■■■■□ 3.36
LRCH3Q96II8 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC35.93■■■■□ 3.34
LRCH3Q96II8 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC35.85■■■■□ 3.33
LRCH3Q96II8 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC35.73■■■■□ 3.31
LRCH3Q96II8 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC35.68■■■■□ 3.3
LRCH3Q96II8 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC35.67■■■■□ 3.3
LRCH3Q96II8 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC35.58■■■■□ 3.29
LRCH3Q96II8 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC35.38■■■■□ 3.25
LRCH3Q96II8 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC35.31■■■■□ 3.24
LRCH3Q96II8 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC35.3■■■■□ 3.24
LRCH3Q96II8 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC35.3■■■■□ 3.24
LRCH3Q96II8 ZNRF2P1-201ENST00000441407 443 ntBASIC35.24■■■■□ 3.23
LRCH3Q96II8 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC35.23■■■■□ 3.23
LRCH3Q96II8 AL356512.1-201ENST00000607453 1739 ntBASIC35.22■■■■□ 3.23
LRCH3Q96II8 AC006077.2-201ENST00000623591 457 ntBASIC35.08■■■■□ 3.21
LRCH3Q96II8 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC35.08■■■■□ 3.21
LRCH3Q96II8 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC35.06■■■■□ 3.2
LRCH3Q96II8 INO80B-203ENST00000409917 796 ntTSL 2 BASIC35.05■■■■□ 3.2
LRCH3Q96II8 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC34.9■■■■□ 3.18
LRCH3Q96II8 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC34.79■■■■□ 3.16
LRCH3Q96II8 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC34.67■■■■□ 3.14
LRCH3Q96II8 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC34.53■■■■□ 3.12
LRCH3Q96II8 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC34.51■■■■□ 3.12
LRCH3Q96II8 AP002365.1-201ENST00000603448 772 ntBASIC34.34■■■■□ 3.09
LRCH3Q96II8 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC34.3■■■■□ 3.08
LRCH3Q96II8 AC015813.7-201ENST00000623294 581 ntBASIC34.29■■■■□ 3.08
LRCH3Q96II8 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC34.25■■■■□ 3.07
LRCH3Q96II8 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC34.17■■■■□ 3.06
LRCH3Q96II8 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC34.17■■■■□ 3.06
LRCH3Q96II8 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC34.02■■■■□ 3.04
LRCH3Q96II8 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC34.02■■■■□ 3.04
LRCH3Q96II8 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC33.94■■■■□ 3.02
LRCH3Q96II8 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC33.92■■■■□ 3.02
LRCH3Q96II8 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC33.9■■■■□ 3.02
LRCH3Q96II8 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC33.86■■■■□ 3.01
LRCH3Q96II8 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC33.86■■■■□ 3.01
LRCH3Q96II8 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC33.84■■■■□ 3.01
LRCH3Q96II8 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC33.83■■■■□ 3.01
LRCH3Q96II8 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC33.82■■■■□ 3
LRCH3Q96II8 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC33.8■■■■□ 3
LRCH3Q96II8 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC33.71■■■□□ 2.99
LRCH3Q96II8 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC33.6■■■□□ 2.97
LRCH3Q96II8 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC33.55■■■□□ 2.96
LRCH3Q96II8 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC33.5■■■□□ 2.95
LRCH3Q96II8 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC33.44■■■□□ 2.94
LRCH3Q96II8 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC33.41■■■□□ 2.94
LRCH3Q96II8 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC33.4■■■□□ 2.94
LRCH3Q96II8 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC33.39■■■□□ 2.94
LRCH3Q96II8 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC33.39■■■□□ 2.94
LRCH3Q96II8 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC33.38■■■□□ 2.93
LRCH3Q96II8 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC33.32■■■□□ 2.92
LRCH3Q96II8 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC33.28■■■□□ 2.92
LRCH3Q96II8 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC33.26■■■□□ 2.92
LRCH3Q96II8 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC33.25■■■□□ 2.91
LRCH3Q96II8 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC33.24■■■□□ 2.91
LRCH3Q96II8 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC33.23■■■□□ 2.91
LRCH3Q96II8 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC33.23■■■□□ 2.91
LRCH3Q96II8 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC33.23■■■□□ 2.91
LRCH3Q96II8 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC33.19■■■□□ 2.9
LRCH3Q96II8 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC33.19■■■□□ 2.9
LRCH3Q96II8 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC33.17■■■□□ 2.9
LRCH3Q96II8 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC33.14■■■□□ 2.9
LRCH3Q96II8 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC33.12■■■□□ 2.89
LRCH3Q96II8 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC33.12■■■□□ 2.89
LRCH3Q96II8 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC33.12■■■□□ 2.89
LRCH3Q96II8 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC33.1■■■□□ 2.89
LRCH3Q96II8 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC33.04■■■□□ 2.88
LRCH3Q96II8 DYNLL1-208ENST00000550178 581 ntBASIC33.04■■■□□ 2.88
LRCH3Q96II8 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC33.01■■■□□ 2.88
LRCH3Q96II8 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC33■■■□□ 2.87
LRCH3Q96II8 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC32.95■■■□□ 2.87
LRCH3Q96II8 HES6-203ENST00000409160 1600 ntTSL 2 BASIC32.93■■■□□ 2.86
LRCH3Q96II8 RPS2P35-201ENST00000443417 897 ntBASIC32.93■■■□□ 2.86
LRCH3Q96II8 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC32.92■■■□□ 2.86
LRCH3Q96II8 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC32.9■■■□□ 2.86
LRCH3Q96II8 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC32.86■■■□□ 2.85
LRCH3Q96II8 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC32.83■■■□□ 2.85
LRCH3Q96II8 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC32.83■■■□□ 2.85
LRCH3Q96II8 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.85
LRCH3Q96II8 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.84
LRCH3Q96II8 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC32.81■■■□□ 2.84
LRCH3Q96II8 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC32.8■■■□□ 2.84
LRCH3Q96II8 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC32.8■■■□□ 2.84
LRCH3Q96II8 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC32.8■■■□□ 2.84
LRCH3Q96II8 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC32.77■■■□□ 2.84
LRCH3Q96II8 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC32.76■■■□□ 2.83
LRCH3Q96II8 AL031258.1-201ENST00000623562 325 ntBASIC32.75■■■□□ 2.83
LRCH3Q96II8 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC32.72■■■□□ 2.83
LRCH3Q96II8 RARRES2P7-201ENST00000567349 469 ntBASIC32.72■■■□□ 2.83
LRCH3Q96II8 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC32.72■■■□□ 2.83
Retrieved 100 of 98,524 protein–RNA pairs in 13.5 ms