Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC35.88■■■■□ 3.33
SLC44A3Q8N4M1 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC35.66■■■■□ 3.3
SLC44A3Q8N4M1 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC35.18■■■■□ 3.22
SLC44A3Q8N4M1 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC35■■■■□ 3.19
SLC44A3Q8N4M1 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC34.66■■■■□ 3.14
SLC44A3Q8N4M1 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC34.43■■■■□ 3.1
SLC44A3Q8N4M1 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC34.21■■■■□ 3.07
SLC44A3Q8N4M1 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC34.15■■■■□ 3.06
SLC44A3Q8N4M1 AL356512.1-201ENST00000607453 1739 ntBASIC34.12■■■■□ 3.05
SLC44A3Q8N4M1 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC33.98■■■■□ 3.03
SLC44A3Q8N4M1 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC33.92■■■■□ 3.02
SLC44A3Q8N4M1 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC33.82■■■■□ 3
SLC44A3Q8N4M1 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC33.77■■■■□ 3
SLC44A3Q8N4M1 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC33.77■■■■□ 3
SLC44A3Q8N4M1 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC33.48■■■□□ 2.95
SLC44A3Q8N4M1 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC33.45■■■□□ 2.95
SLC44A3Q8N4M1 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC33.42■■■□□ 2.94
SLC44A3Q8N4M1 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC33.35■■■□□ 2.93
SLC44A3Q8N4M1 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC33.32■■■□□ 2.92
SLC44A3Q8N4M1 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC33.05■■■□□ 2.88
SLC44A3Q8N4M1 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC33.05■■■□□ 2.88
SLC44A3Q8N4M1 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC33.01■■■□□ 2.87
SLC44A3Q8N4M1 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC32.99■■■□□ 2.87
SLC44A3Q8N4M1 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC32.88■■■□□ 2.85
SLC44A3Q8N4M1 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC32.85■■■□□ 2.85
SLC44A3Q8N4M1 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC32.83■■■□□ 2.85
SLC44A3Q8N4M1 INO80B-203ENST00000409917 796 ntTSL 2 BASIC32.82■■■□□ 2.84
SLC44A3Q8N4M1 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC32.81■■■□□ 2.84
SLC44A3Q8N4M1 HES6-203ENST00000409160 1600 ntTSL 2 BASIC32.77■■■□□ 2.84
SLC44A3Q8N4M1 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC32.59■■■□□ 2.81
SLC44A3Q8N4M1 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC32.54■■■□□ 2.8
SLC44A3Q8N4M1 ZNRF2P1-201ENST00000441407 443 ntBASIC32.52■■■□□ 2.8
SLC44A3Q8N4M1 AC006077.2-201ENST00000623591 457 ntBASIC32.52■■■□□ 2.8
SLC44A3Q8N4M1 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC32.42■■■□□ 2.78
SLC44A3Q8N4M1 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC32.41■■■□□ 2.78
SLC44A3Q8N4M1 AC015813.7-201ENST00000623294 581 ntBASIC32.3■■■□□ 2.76
SLC44A3Q8N4M1 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC32.28■■■□□ 2.76
SLC44A3Q8N4M1 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC32.23■■■□□ 2.75
SLC44A3Q8N4M1 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
SLC44A3Q8N4M1 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC32.14■■■□□ 2.74
SLC44A3Q8N4M1 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC31.92■■■□□ 2.7
SLC44A3Q8N4M1 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC31.76■■■□□ 2.68
SLC44A3Q8N4M1 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC31.72■■■□□ 2.67
SLC44A3Q8N4M1 AP002365.1-201ENST00000603448 772 ntBASIC31.7■■■□□ 2.67
SLC44A3Q8N4M1 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
SLC44A3Q8N4M1 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC31.64■■■□□ 2.66
SLC44A3Q8N4M1 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
SLC44A3Q8N4M1 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC31.55■■■□□ 2.64
SLC44A3Q8N4M1 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
SLC44A3Q8N4M1 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC31.51■■■□□ 2.63
SLC44A3Q8N4M1 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC31.47■■■□□ 2.63
SLC44A3Q8N4M1 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC31.47■■■□□ 2.63
SLC44A3Q8N4M1 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
SLC44A3Q8N4M1 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC31.46■■■□□ 2.63
SLC44A3Q8N4M1 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC31.4■■■□□ 2.62
SLC44A3Q8N4M1 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
SLC44A3Q8N4M1 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC31.35■■■□□ 2.61
SLC44A3Q8N4M1 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC31.32■■■□□ 2.6
SLC44A3Q8N4M1 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC31.32■■■□□ 2.6
SLC44A3Q8N4M1 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
SLC44A3Q8N4M1 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC31.27■■■□□ 2.6
SLC44A3Q8N4M1 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC31.25■■■□□ 2.59
SLC44A3Q8N4M1 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC31.23■■■□□ 2.59
SLC44A3Q8N4M1 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC31.13■■■□□ 2.57
SLC44A3Q8N4M1 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC31.11■■■□□ 2.57
SLC44A3Q8N4M1 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
SLC44A3Q8N4M1 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC31.1■■■□□ 2.57
SLC44A3Q8N4M1 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC31.1■■■□□ 2.57
SLC44A3Q8N4M1 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC31.1■■■□□ 2.57
SLC44A3Q8N4M1 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
SLC44A3Q8N4M1 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
SLC44A3Q8N4M1 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC31■■■□□ 2.55
SLC44A3Q8N4M1 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC30.97■■■□□ 2.55
SLC44A3Q8N4M1 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
SLC44A3Q8N4M1 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
SLC44A3Q8N4M1 DYNLL1-208ENST00000550178 581 ntBASIC30.93■■■□□ 2.54
SLC44A3Q8N4M1 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
SLC44A3Q8N4M1 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
SLC44A3Q8N4M1 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC30.91■■■□□ 2.54
SLC44A3Q8N4M1 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC30.88■■■□□ 2.53
SLC44A3Q8N4M1 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC30.85■■■□□ 2.53
SLC44A3Q8N4M1 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
SLC44A3Q8N4M1 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC30.83■■■□□ 2.53
SLC44A3Q8N4M1 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC30.83■■■□□ 2.53
SLC44A3Q8N4M1 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
SLC44A3Q8N4M1 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
SLC44A3Q8N4M1 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
SLC44A3Q8N4M1 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC30.75■■■□□ 2.51
SLC44A3Q8N4M1 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
SLC44A3Q8N4M1 AL031258.1-201ENST00000623562 325 ntBASIC30.71■■■□□ 2.51
SLC44A3Q8N4M1 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
SLC44A3Q8N4M1 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC30.58■■■□□ 2.49
SLC44A3Q8N4M1 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC30.58■■■□□ 2.49
SLC44A3Q8N4M1 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC30.57■■■□□ 2.48
SLC44A3Q8N4M1 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
SLC44A3Q8N4M1 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC30.55■■■□□ 2.48
SLC44A3Q8N4M1 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC30.55■■■□□ 2.48
SLC44A3Q8N4M1 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
SLC44A3Q8N4M1 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC30.53■■■□□ 2.48
SLC44A3Q8N4M1 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms