Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC41.51■■■■■ 4.24
USP48Q86UV5 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC41.41■■■■■ 4.22
USP48Q86UV5 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC40.92■■■■■ 4.14
USP48Q86UV5 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC40.51■■■■■ 4.07
USP48Q86UV5 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC40.09■■■■■ 4.01
USP48Q86UV5 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC39.75■■■■□ 3.95
USP48Q86UV5 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC39.68■■■■□ 3.94
USP48Q86UV5 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC39.58■■■■□ 3.93
USP48Q86UV5 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC39.5■■■■□ 3.91
USP48Q86UV5 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC39.47■■■■□ 3.91
USP48Q86UV5 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC39.34■■■■□ 3.89
USP48Q86UV5 AL356512.1-201ENST00000607453 1739 ntBASIC39.32■■■■□ 3.89
USP48Q86UV5 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC39.2■■■■□ 3.87
USP48Q86UV5 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC39.17■■■■□ 3.86
USP48Q86UV5 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC39.05■■■■□ 3.84
USP48Q86UV5 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC38.93■■■■□ 3.82
USP48Q86UV5 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC38.65■■■■□ 3.78
USP48Q86UV5 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC38.62■■■■□ 3.77
USP48Q86UV5 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC38.45■■■■□ 3.75
USP48Q86UV5 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC38.43■■■■□ 3.74
USP48Q86UV5 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC38.43■■■■□ 3.74
USP48Q86UV5 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC38.43■■■■□ 3.74
USP48Q86UV5 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC38.4■■■■□ 3.74
USP48Q86UV5 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC38.37■■■■□ 3.73
USP48Q86UV5 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC38.37■■■■□ 3.73
USP48Q86UV5 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC38.36■■■■□ 3.73
USP48Q86UV5 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC38.33■■■■□ 3.73
USP48Q86UV5 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC38.21■■■■□ 3.71
USP48Q86UV5 INO80B-203ENST00000409917 796 ntTSL 2 BASIC38.17■■■■□ 3.7
USP48Q86UV5 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC37.99■■■■□ 3.67
USP48Q86UV5 ZNRF2P1-201ENST00000441407 443 ntBASIC37.88■■■■□ 3.65
USP48Q86UV5 HES6-203ENST00000409160 1600 ntTSL 2 BASIC37.86■■■■□ 3.65
USP48Q86UV5 AC006077.2-201ENST00000623591 457 ntBASIC37.84■■■■□ 3.65
USP48Q86UV5 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC37.73■■■■□ 3.63
USP48Q86UV5 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC37.69■■■■□ 3.62
USP48Q86UV5 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC37.56■■■■□ 3.6
USP48Q86UV5 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC37.56■■■■□ 3.6
USP48Q86UV5 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC37.51■■■■□ 3.6
USP48Q86UV5 AC015813.7-201ENST00000623294 581 ntBASIC37.5■■■■□ 3.59
USP48Q86UV5 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC37.42■■■■□ 3.58
USP48Q86UV5 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC37.36■■■■□ 3.57
USP48Q86UV5 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC37.3■■■■□ 3.56
USP48Q86UV5 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC37.16■■■■□ 3.54
USP48Q86UV5 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC36.96■■■■□ 3.51
USP48Q86UV5 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC36.94■■■■□ 3.5
USP48Q86UV5 AP002365.1-201ENST00000603448 772 ntBASIC36.93■■■■□ 3.5
USP48Q86UV5 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC36.92■■■■□ 3.5
USP48Q86UV5 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC36.86■■■■□ 3.49
USP48Q86UV5 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC36.86■■■■□ 3.49
USP48Q86UV5 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC36.82■■■■□ 3.48
USP48Q86UV5 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC36.72■■■■□ 3.47
USP48Q86UV5 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC36.72■■■■□ 3.47
USP48Q86UV5 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC36.69■■■■□ 3.46
USP48Q86UV5 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC36.68■■■■□ 3.46
USP48Q86UV5 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC36.68■■■■□ 3.46
USP48Q86UV5 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC36.67■■■■□ 3.46
USP48Q86UV5 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC36.66■■■■□ 3.46
USP48Q86UV5 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC36.57■■■■□ 3.45
USP48Q86UV5 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC36.57■■■■□ 3.44
USP48Q86UV5 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC36.54■■■■□ 3.44
USP48Q86UV5 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC36.52■■■■□ 3.44
USP48Q86UV5 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC36.49■■■■□ 3.43
USP48Q86UV5 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC36.48■■■■□ 3.43
USP48Q86UV5 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC36.48■■■■□ 3.43
USP48Q86UV5 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC36.46■■■■□ 3.43
USP48Q86UV5 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC36.44■■■■□ 3.42
USP48Q86UV5 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC36.4■■■■□ 3.42
USP48Q86UV5 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC36.38■■■■□ 3.41
USP48Q86UV5 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC36.32■■■■□ 3.4
USP48Q86UV5 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC36.32■■■■□ 3.4
USP48Q86UV5 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC36.31■■■■□ 3.4
USP48Q86UV5 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC36.26■■■■□ 3.4
USP48Q86UV5 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC36.25■■■■□ 3.39
USP48Q86UV5 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC36.17■■■■□ 3.38
USP48Q86UV5 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC36.16■■■■□ 3.38
USP48Q86UV5 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC36.14■■■■□ 3.38
USP48Q86UV5 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC36.13■■■■□ 3.37
USP48Q86UV5 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC36.11■■■■□ 3.37
USP48Q86UV5 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC36.08■■■■□ 3.37
USP48Q86UV5 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC36.07■■■■□ 3.36
USP48Q86UV5 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC36.07■■■■□ 3.36
USP48Q86UV5 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC36.06■■■■□ 3.36
USP48Q86UV5 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC36.03■■■■□ 3.36
USP48Q86UV5 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC35.97■■■■□ 3.35
USP48Q86UV5 DYNLL1-208ENST00000550178 581 ntBASIC35.97■■■■□ 3.35
USP48Q86UV5 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC35.96■■■■□ 3.35
USP48Q86UV5 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC35.95■■■■□ 3.35
USP48Q86UV5 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC35.95■■■■□ 3.34
USP48Q86UV5 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC35.89■■■■□ 3.34
USP48Q86UV5 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC35.88■■■■□ 3.33
USP48Q86UV5 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC35.87■■■■□ 3.33
USP48Q86UV5 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC35.87■■■■□ 3.33
USP48Q86UV5 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC35.83■■■■□ 3.33
USP48Q86UV5 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC35.83■■■■□ 3.33
USP48Q86UV5 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC35.82■■■■□ 3.32
USP48Q86UV5 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC35.78■■■■□ 3.32
USP48Q86UV5 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC35.78■■■■□ 3.32
USP48Q86UV5 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC35.77■■■■□ 3.32
USP48Q86UV5 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC35.76■■■■□ 3.32
USP48Q86UV5 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC35.7■■■■□ 3.31
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms